mRNA_H-elongata_contig9387.16826.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9387.16826.1
Unique NamemRNA_H-elongata_contig9387.16826.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: D7FQN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQN8_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.830e-49
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 RLEDAMNQALSASDLHLVMWLCGRLDPTTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLAATPTIALRGGPDIIVVRLTTHVINSL 357
            R++DAMN+ALSASDL LVMWLCGRLDP  TPS LPQHIL+CL+QQ  ASDLL+DTTAKL+WLQ+C LA+DP E  I AHLP+VL QLK AL  +TP I+ RGG D+ VVRLTTHV+NSL
Sbjct: 1680 RVDDAMNRALSASDLPLVMWLCGRLDPVATPSTLPQHILLCLVQQFGASDLLEDTTAKLKWLQNCVLAIDPTEATIRAHLPVVLRQLKGALTTSTPIISQRGGTDVSVVRLTTHVVNSL 1798          
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A5J9UX26_9POAL (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UX26_9POAL)

HSP 1 Score: 75.9 bits (185), Expect = 1.320e-13
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 RLEDAMNQALSASDLHLVMWLCGRLDPTTTPSALP----QHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALL--AATPTIALRGGPDIIVVRLTTHVINSL 357
            + ++A   AL  SD+ +V WLC ++D     +  P    Q +L+ LLQQL A D+ +DT+ KLQW+   A+A++P +P I AH+  + EQ+   L    A PT +   G  I   RL  H+INS+
Sbjct: 1260 KFDEAFTMALHRSDVSIVSWLCSQVDLRALCAMAPLPFNQGVLLALLQQL-AIDINNDTSRKLQWMTDVAMAINPADPVIAAHVRPIFEQVYGQLAHHRALPTTSAADGTSI---RLLMHIINSV 1380          
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: C1EEP4_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EEP4_MICCC)

HSP 1 Score: 72.4 bits (176), Expect = 6.180e-13
Identity = 46/127 (36.22%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    7 EDAMNQALSASDLHLVMWLCGRLDPT------TTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVL----EQLKSALLAATPTIALRGGPDIIVVRLTTHVINSL 357
            E+A  +AL  + +  V W CGR +P         P  L Q +L+ L+QQLS SDL D+ + KLQW+Q+  LA+DP +  +   LP++L    + L     A      +RG      +RL  HV+NSL
Sbjct:  127 EEAFQKALGMASVETVTWTCGRCEPVRDDIFGAVPVPLSQTVLLSLMQQLS-SDLDDEPSLKLQWIQAACLAMDPSDQSLAQALPVILGAVFDSLTETAQAPDTPAGVRGD-----LRLVLHVVNSL 247          
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: UPI001F5CDF23 (enhancer of mRNA-decapping protein 4-like isoform X1 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDF23)

HSP 1 Score: 72.4 bits (176), Expect = 2.160e-12
Identity = 46/123 (37.40%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLAATPTIALRGGPDIIVVRLTTHVINSL 357
            + ++A   AL  SD+ +V WLC ++D     T  P  L Q +L+ LLQQL A D+  +++ K+QW+   A+A++P +  I AH+  + EQ+  A LA   T+      DI  +RL  HVINS+
Sbjct: 1201 KFDEAFTVALQRSDVSIVSWLCSQVDLRGLCTMAPLPLNQGVLLALLQQL-AVDIYTESSRKIQWMTDVAMAINPTDQVIAAHVRPIFEQVY-AKLAHHRTLPSTNPADISNLRLLMHVINSV 1321          
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A6L2PLN2_COPFO (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PLN2_COPFO)

HSP 1 Score: 67.4 bits (163), Expect = 1.220e-10
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSAL 273
            ++  A  QALSASDL LV+++C +++P      TP  L QH+L+ L+QQLSA D+ + T  K ++L+   + +DP  P    H+P VL  L+  L
Sbjct: 1069 QINAAFQQALSASDLSLVVFICEKVNPQQVFNQTPCPLQQHVLLSLIQQLSA-DMSNYTELKHKYLEEAVMNLDPTNPLTREHMPGVLNNLQHQL 1162          
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A7J7LFG8_9MAGN (Ge1_WD40 domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LFG8_9MAGN)

HSP 1 Score: 67.4 bits (163), Expect = 1.230e-10
Identity = 40/123 (32.52%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLAATPTIALRGGPDIIVVRLTTHVINSL 357
            + E+A   AL  SD+ +V WLC ++D     + +P ++ Q +L+ L+QQL A D  ++T+ K+ W++  ALA++P +P I AH+  + EQ+   +L+   ++      +   +RL  H+I+SL
Sbjct: 1238 KYEEAFMAALQRSDVSIVSWLCSQVDLNGILSQSPLSMTQGVLLALIQQL-ACDFSNETSRKVTWMKDVALAINPGDPVIAAHVRPIFEQVYQ-ILSHHHSLPSSNTTETSSIRLLMHLIHSL 1358          
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A1B6EJ47_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EJ47_9HEMI)

HSP 1 Score: 65.5 bits (158), Expect = 1.400e-10
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLA 279
            ++  A  QALSASDL+LV+++C +++P    + +P  L QH+L+ L+QQLSA D+ + T  K ++L+   + +D +      HLP+VL  L+  L A
Sbjct:   82 QINTAFQQALSASDLNLVVFVCEKVNPQQLFSQSPCPLQQHVLLSLVQQLSA-DMNNHTDIKHKYLEEALMNLDTKNAMTREHLPVVLNNLQRQLQA 177          
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A2J7QWG6_9NEOP (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QWG6_9NEOP)

HSP 1 Score: 67.0 bits (162), Expect = 1.640e-10
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLA 279
            ++  A  QALSASDL LV+++C +++P      TP  L QH+L+ L+QQLSA D+ + T  K ++L+   + +D   P    H+P VL  L+  L A
Sbjct:  794 QINTAFQQALSASDLGLVVFICEKVNPQQVFNQTPCPLQQHVLLSLIQQLSA-DMSNHTELKHKYLEEAVMNLDATNPLTREHMPAVLTNLQRQLTA 889          
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A2J7QWF5_9NEOP (Ge1_WD40 domain-containing protein n=4 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QWF5_9NEOP)

HSP 1 Score: 67.0 bits (162), Expect = 1.670e-10
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 RLEDAMNQALSASDLHLVMWLCGRLDP----TTTPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLA 279
            ++  A  QALSASDL LV+++C +++P      TP  L QH+L+ L+QQLSA D+ + T  K ++L+   + +D   P    H+P VL  L+  L A
Sbjct: 1085 QINTAFQQALSASDLGLVVFICEKVNPQQVFNQTPCPLQQHVLLSLIQQLSA-DMSNHTELKHKYLEEAVMNLDATNPLTREHMPAVLTNLQRQLTA 1180          
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Match: A0A8J1TTT9_OWEFU (Ofus.G063471 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TTT9_OWEFU)

HSP 1 Score: 67.0 bits (162), Expect = 1.680e-10
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 RLEDAMNQALSASDLHLVMWLCGRLDPTT----TPSALPQHILVCLLQQLSASDLLDDTTAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLAATPT 291
            +L  A  QALSASDL+LV+++C  ++PT     TP  L Q +L+ L+QQLSA DL  +T  K Q+L+   + +D   P    H+P+VL  L   + A   T
Sbjct: 1311 QLNTAFQQALSASDLNLVIFVCETVNPTQVFHQTPCPLEQPVLLSLIQQLSA-DLETNTELKHQYLEEAVMNLDSTNPVTREHMPIVLHTLCQKIHACLQT 1410          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9387.16826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQN8_ECTSI1.830e-4972.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5J9UX26_9POAL1.320e-1337.60Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
C1EEP4_MICCC6.180e-1336.22Uncharacterized protein (Fragment) n=1 Tax=Micromo... [more]
UPI001F5CDF232.160e-1237.40enhancer of mRNA-decapping protein 4-like isoform ... [more]
A0A6L2PLN2_COPFO1.220e-1040.00Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
A0A7J7LFG8_9MAGN1.230e-1032.52Ge1_WD40 domain-containing protein n=1 Tax=Kingdon... [more]
A0A1B6EJ47_9HEMI1.400e-1038.14Uncharacterized protein (Fragment) n=1 Tax=Cuerna ... [more]
A0A2J7QWG6_9NEOP1.640e-1039.18Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
A0A2J7QWF5_9NEOP1.670e-1039.18Ge1_WD40 domain-containing protein n=4 Tax=Cryptot... [more]
A0A8J1TTT9_OWEFU1.680e-1040.59Ofus.G063471 protein n=1 Tax=Owenia fusiformis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9387contigH-elongata_contig9387:7491..8564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.9e-40
Seed eggNOG ortholog2880.D7FQN8
KEGG koko:K08592,ko:K12616
KEGG Pathwayko03018,map03018
EggNOG free text desc.deadenylation-independent decapping of nuclear-transcribed mRNA
EggNOG OGsKOG1916@1,KOG1916@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9387.16826.1prot_H-elongata_contig9387.16826.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9387 7491..8549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.6772232-CDS-H-elongata_contig9387:7490..76821622931335.6772232-CDS-H-elongata_contig9387:7490..7682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9387 7491..7682 -
1691679794.7704263-CDS-H-elongata_contig9387:7490..76821691679794.7704263-CDS-H-elongata_contig9387:7490..7682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9387 7491..7682 -
1622931335.7032547-CDS-H-elongata_contig9387:8399..85491622931335.7032547-CDS-H-elongata_contig9387:8399..8549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9387 8400..8549 -
1691679794.7840064-CDS-H-elongata_contig9387:8399..85491691679794.7840064-CDS-H-elongata_contig9387:8399..8549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9387 8400..8549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.7249515-UTR-H-elongata_contig9387:8549..85641622931335.7249515-UTR-H-elongata_contig9387:8549..8564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9387 8550..8564 -
1691679794.7948117-UTR-H-elongata_contig9387:8549..85641691679794.7948117-UTR-H-elongata_contig9387:8549..8564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9387 8550..8564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9387.16826.1

>prot_H-elongata_contig9387.16826.1 ID=prot_H-elongata_contig9387.16826.1|Name=mRNA_H-elongata_contig9387.16826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MNQALSASDLHLVMWLCGRLDPTTTPSALPQHILVCLLQQLSASDLLDDT
TAKLQWLQSCALAVDPREPKIHAHLPLVLEQLKSALLAATPTIALRGGPD
IIVVRLTTHVINSL
back to top

mRNA from alignment at H-elongata_contig9387:7491..8564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9387.16826.1 ID=mRNA_H-elongata_contig9387.16826.1|Name=mRNA_H-elongata_contig9387.16826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-elongata_contig9387:7491..8564- (Himanthalia elongata Himel1 dioecious)
AGGCTGGAGGACGCCATGAACCAGGCCCTGTCCGCGTCCGACCTCCATCT GGTGATGTGGCTCTGCGGTCGGCTCGATCCCACCACGACTCCGTCCGCCC TCCCGCAGCACATCCTCGTATGCCTGCTGCAGCAGCTTAGCGCCTCGGAC CTCTTGGATGACACGGTAAGGGACATAATAATATCACTATACACTATAAT CAATATAATAAAAGCCGCGTGATGATTGTCCATTCGATGTCATTCGACCC TCATATGCAACACAGAACAGCACAGTATTAATAGTATAATTTGTCGTACT TACAATTCATTTCGTATATTCATATTCTATAATAGTTCTCGAAATATTTT ATTTTATCTCTTCTTTTAAGTGGGAGGGAGGGACGAGGCATGAAGGCTCT AATGATGTGTTACTTGGCACTAATGATATTATTAGTATATACTGTACCAG GGGGAAAAGTTCTATTACTAGCGTCATTTCTTAGCCAAGCGACACCGTGG GACATTTAATGTAATATTAAGTATACTTCATTGTCTGGTTTTAGGTTGGG TTGTCAAAACCGCCCTTCGTCCCTCCGAGAAAAAATGGTTACCGGTTAGC CTCATTCGAGTGCTATATTTGGTAGTACAATATTTAGTACCTATATGTTA GCTCTAATGGGCAATGCCCATCTCCCTCCCCTACTTATTTTCCTGTCTGT AAGAGTTCTGATCGACTATTTTATTTCAATGCCCTGGGATCGTCCACTCT CCCCTCAAGTAGCAAAGACATGAAATACCCTGAACAGACGAACACCCCCT CCCCCTCTCGCTCTTTTACGGCCTCCTCCGCGTGGAACACCCATCCGTAT ACACGTATACGGCTGACGTCGTACGCGCATAGACCGCCAAGCTTCAGTGG CTCCAGAGCTGCGCACTGGCGGTGGACCCTAGGGAACCCAAGATCCACGC CCACCTTCCTCTGGTGCTGGAGCAGCTCAAGAGCGCGCTCTTGGCCGCGA CCCCTACGATCGCCCTTAGAGGAGGGCCAGACATCATCGTGGTGAGGCTC ACCACCCACGTGATCAACAGCCTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig9387:7491..8564-

>mRNA_H-elongata_contig9387.16826.1 ID=mRNA_H-elongata_contig9387.16826.1|Name=mRNA_H-elongata_contig9387.16826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig9387:7491..8564- (Himanthalia elongata Himel1 dioecious)
ATGAACCAGGCCCTGTCCGCGTCCGACCTCCATCTGGTGATGTGGCTCTG
CGGTCGGCTCGATCCCACCACGACTCCGTCCGCCCTCCCGCAGCACATCC
TCGTATGCCTGCTGCAGCAGCTTAGCGCCTCGGACCTCTTGGATGACACG
ATGAACCAGGCCCTGTCCGCGTCCGACCTCCATCTGGTGATGTGGCTCTG
CGGTCGGCTCGATCCCACCACGACTCCGTCCGCCCTCCCGCAGCACATCC
TCGTATGCCTGCTGCAGCAGCTTAGCGCCTCGGACCTCTTGGATGACACG
ACCGCCAAGCTTCAGTGGCTCCAGAGCTGCGCACTGGCGGTGGACCCTAG
GGAACCCAAGATCCACGCCCACCTTCCTCTGGTGCTGGAGCAGCTCAAGA
GCGCGCTCTTGGCCGCGACCCCTACGATCGCCCTTAGAGGAGGGCCAGAC
ATCATCGTGGTGAGGCTCACCACCCACGTGATCAACAGCCTTACCGCCAA
GCTTCAGTGGCTCCAGAGCTGCGCACTGGCGGTGGACCCTAGGGAACCCA
AGATCCACGCCCACCTTCCTCTGGTGCTGGAGCAGCTCAAGAGCGCGCTC
TTGGCCGCGACCCCTACGATCGCCCTTAGAGGAGGGCCAGACATCATCGT
GGTGAGGCTCACCACCCACGTGATCAACAGCCTT
back to top