mRNA_H-elongata_contig93869.16824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93869.16824.1
Unique NamemRNA_H-elongata_contig93869.16824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.310e-17
Identity = 52/132 (39.39%), Postives = 72/132 (54.55%), Query Frame = 1
Query:   10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG----------------ITGD------W-KAIAVKAEI-WGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
            C+S+E T+R RRLL+AG L R   GRLPKR+  G L G  +R RGG+E+ W  CV  D++AFG                +  D      W +A  V+ E+ W   V +G  RFM +W ++E +A+R R  KR
Sbjct:  212 CQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 343          
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.350e-17
Identity = 46/123 (37.40%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG------------------------ITGDWKAIAVKAEIWGEIVAEGGRRFMAAWRKEEVD 306
            C+S+E T+R RRLL+AG+L R   GRLPKR+ FG L G  +R RGG+E+ W  CV  D++AFG                        + G   A       W   V +G  RFM +W K+E +
Sbjct:   56 CQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCFGIPGPKDTAPKLKGTEAAKVEGGVPWHAAVLQGAERFMTSWHKKEAE 178          
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.140e-17
Identity = 52/132 (39.39%), Postives = 70/132 (53.03%), Query Frame = 1
Query:   10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIT-GDWK----------------------AIAVKAEI-WGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
            C+S+E T+R RRLL+AG L R   GRLPKR+ FG L G  +R RGG+E+ W  CV  D++AFG   G  K                      A  V+  + W   V +G  RFM +W ++E +A+R R  KR
Sbjct:  318 CQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTTPKVKWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 449          
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.530e-17
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGI----------------TGD------W-KAIAVKAEI-WGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
            C+S+E T+R RRLL+AG L R   GRLPKR+ FG L G  +R RGG+E+ W  CV  D+ AFG                 T D      W +A  V+  + W   V +G  RFM +W ++E +A+R R  KR
Sbjct:  540 CQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671          
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 82.0 bits (201), Expect = 5.630e-17
Identity = 49/122 (40.16%), Postives = 61/122 (50.00%), Query Frame = 1
Query:    1 MTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIR--------------AFGI-TGDWKAIAVKAEIWGEIVAEGGRRFMAAWRKEEVDAARLR 321
            MTRCESIETT+R RRL +AG + R S  RLP R+ FG + G      GG+ K W  CV  D+R               FG+ T  W   A KA  W   + E   RFM  W + E + +R R
Sbjct:   22 MTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKWYRGILEAAERFMVRWHEAEAELSRQR 143          
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.500e-16
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   13 ESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIT-----GDWKAIAVKAEIWGEIVAEGGRRFMAAWRKEEVDAARLRQEKREA 339
            E+IE T+R RRL +AG ++RM   RLPKR+  G + G V   RGG+E +W   +  D+ AF +      G WK  A  +E+W   V +G   FM  W ++E +A+  RQ  REA
Sbjct:   62 ETIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGY-RGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREA 174          
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.140e-16
Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWKAI-AVKAEIWGEI------------VAEGGRRFMAAWRKEEVDAARLRQEKR 333
            C+S+E T+R RRLL+AG + R   GRLPKR+ FG L G    GRG  E+ W  C++ D++ F    G T D +++  V   +W E             V +G  RFMA+W K + +A+R R  KR
Sbjct:  966 CQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1090          
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.450e-15
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWKAI----------AVKAE---IWGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
            C+S+E T+R RRLL+AG + R   GRLPKR+ FG L G    GRG  E+ W  C++ D++ F    G T D ++           A K E    W   V +G  RFMA+W K E  A+R R  KR
Sbjct:  469 CQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 593          
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.990e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 198
            CES+E T+R RRLL+AG L R   GRLPKR+ FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  188 CESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250          
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.740e-15
Identity = 50/125 (40.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWKAI----------AVKAE---IWGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
            C+S+E T+R RR+L+AG + R   GRLPKR+ FG L G    GRG  E+ W  C++ D++ F    G T D ++           A K E    W   V +G  RFMA+W K E  A+R R  KR
Sbjct:  575 CQSVEATVRQRRVLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 699          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1X4_9PHAE1.310e-1739.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYE2_9PHAE1.350e-1737.40Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFE2_9PHAE3.140e-1739.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE3.530e-1740.15Reverse transcriptase domain-containing protein (F... [more]
UPI001AA1AADC5.630e-1740.16hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JNV8_9PHAE4.500e-1640.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7U5_9PHAE8.140e-1639.20Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE1.450e-1540.80Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JAH7_9PHAE2.990e-1557.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JKI4_9PHAE3.740e-1540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93869contigH-elongata_contig93869:2161..2508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size350
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.5306325-CDS-H-elongata_contig93869:2160..25081622931335.5306325-CDS-H-elongata_contig93869:2160..2508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93869 2161..2508 +
1691679794.7131913-CDS-H-elongata_contig93869:2160..25081691679794.7131913-CDS-H-elongata_contig93869:2160..2508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93869 2161..2508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93869.16824.1prot_H-elongata_contig93869.16824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93869 2161..2508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93869.16824.1

>prot_H-elongata_contig93869.16824.1 ID=prot_H-elongata_contig93869.16824.1|Name=mRNA_H-elongata_contig93869.16824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGK
EKEWTDCVQSDIRAFGITGDWKAIAVKAEIWGEIVAEGGRRFMAAWRKEE
VDAARLRQEKREATEL
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mRNA from alignment at H-elongata_contig93869:2161..2508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93869.16824.1 ID=mRNA_H-elongata_contig93869.16824.1|Name=mRNA_H-elongata_contig93869.16824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig93869:2161..2508+ (Himanthalia elongata Himel1 dioecious)
ATGACCCGGTGCGAGAGCATTGAGACAACGTTGCGCACGAGAAGACTTTT GTGGGCGGGAACGCTCATCCGGATGAGCGGCGGGCGGTTGCCAAAGCGAA TCGCCTTCGGAAACCTTGAGGGTGCAGTACGGAGAGGACGGGGTGGGAAG GAGAAAGAGTGGACTGACTGTGTCCAAAGTGATATCCGGGCGTTTGGCAT TACGGGGGATTGGAAAGCAATTGCGGTGAAGGCTGAGATTTGGGGTGAGA TAGTCGCGGAGGGTGGGCGGAGGTTCATGGCCGCGTGGAGAAAAGAAGAG GTAGACGCGGCTAGACTTCGCCAGGAGAAGAGAGAGGCAACGGAACTG
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Coding sequence (CDS) from alignment at H-elongata_contig93869:2161..2508+

>mRNA_H-elongata_contig93869.16824.1 ID=mRNA_H-elongata_contig93869.16824.1|Name=mRNA_H-elongata_contig93869.16824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig93869:2161..2508+ (Himanthalia elongata Himel1 dioecious)
ATGACCCGGTGCGAGAGCATTGAGACAACGTTGCGCACGAGAAGACTTTT
GTGGGCGGGAACGCTCATCCGGATGAGCGGCGGGCGGTTGCCAAAGCGAA
TCGCCTTCGGAAACCTTGAGGGTGCAGTACGGAGAGGACGGGGTGGGAAG
GAGAAAGAGTGGACTGACTGTGTCCAAAGTGATATCCGGGCGTTTGGCAT
TACGGGGGATTGGAAAGCAATTGCGGTGAAGGCTGAGATTTGGGGTGAGA
TAGTCGCGGAGGGTGGGCGGAGGTTCATGGCCGCGTGGAGAAAAGAAGAG
GTAGACGCGGCTAGACTTCGCCAGGAGAAGAGAGAGGCAACGGAACTGAT
GACCCGGTGCGAGAGCATTGAGACAACGTTGCGCACGAGAAGACTTTTGT
GGGCGGGAACGCTCATCCGGATGAGCGGCGGGCGGTTGCCAAAGCGAATC
GCCTTCGGAAACCTTGAGGGTGCAGTACGGAGAGGACGGGGTGGGAAGGA
GAAAGAGTGGACTGACTGTGTCCAAAGTGATATCCGGGCGTTTGGCATTA
CGGGGGATTGGAAAGCAATTGCGGTGAAGGCTGAGATTTGGGGTGAGATA
GTCGCGGAGGGTGGGCGGAGGTTCATGGCCGCGTGGAGAAAAGAAGAGGT
AGACGCGGCTAGACTTCGCCAGGAGAAGAGAGAGGCAACGGAACTG
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