mRNA_H-elongata_contig93869.16824.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.310e-17 Identity = 52/132 (39.39%), Postives = 72/132 (54.55%), Query Frame = 1
Query: 10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG----------------ITGD------W-KAIAVKAEI-WGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
C+S+E T+R RRLL+AG L R GRLPKR+ G L G +R RGG+E+ W CV D++AFG + D W +A V+ E+ W V +G RFM +W ++E +A+R R KR
Sbjct: 212 CQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 343
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 1.350e-17 Identity = 46/123 (37.40%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG------------------------ITGDWKAIAVKAEIWGEIVAEGGRRFMAAWRKEEVD 306
C+S+E T+R RRLL+AG+L R GRLPKR+ FG L G +R RGG+E+ W CV D++AFG + G A W V +G RFM +W K+E +
Sbjct: 56 CQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCFGIPGPKDTAPKLKGTEAAKVEGGVPWHAAVLQGAERFMTSWHKKEAE 178
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 3.140e-17 Identity = 52/132 (39.39%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIT-GDWK----------------------AIAVKAEI-WGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
C+S+E T+R RRLL+AG L R GRLPKR+ FG L G +R RGG+E+ W CV D++AFG G K A V+ + W V +G RFM +W ++E +A+R R KR
Sbjct: 318 CQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTTPKVKWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 449
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 3.530e-17 Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGI----------------TGD------W-KAIAVKAEI-WGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
C+S+E T+R RRLL+AG L R GRLPKR+ FG L G +R RGG+E+ W CV D+ AFG T D W +A V+ + W V +G RFM +W ++E +A+R R KR
Sbjct: 540 CQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC) HSP 1 Score: 82.0 bits (201), Expect = 5.630e-17 Identity = 49/122 (40.16%), Postives = 61/122 (50.00%), Query Frame = 1
Query: 1 MTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIR--------------AFGI-TGDWKAIAVKAEIWGEIVAEGGRRFMAAWRKEEVDAARLR 321
MTRCESIETT+R RRL +AG + R S RLP R+ FG + G GG+ K W CV D+R FG+ T W A KA W + E RFM W + E + +R R
Sbjct: 22 MTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKWYRGILEAAERFMVRWHEAEAELSRQR 143
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 4.500e-16 Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 13 ESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIT-----GDWKAIAVKAEIWGEIVAEGGRRFMAAWRKEEVDAARLRQEKREA 339
E+IE T+R RRL +AG ++RM RLPKR+ G + G V RGG+E +W + D+ AF + G WK A +E+W V +G FM W ++E +A+ RQ REA
Sbjct: 62 ETIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGY-RGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREA 174
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 8.140e-16 Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWKAI-AVKAEIWGEI------------VAEGGRRFMAAWRKEEVDAARLRQEKR 333
C+S+E T+R RRLL+AG + R GRLPKR+ FG L G GRG E+ W C++ D++ F G T D +++ V +W E V +G RFMA+W K + +A+R R KR
Sbjct: 966 CQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1090
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.450e-15 Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWKAI----------AVKAE---IWGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
C+S+E T+R RRLL+AG + R GRLPKR+ FG L G GRG E+ W C++ D++ F G T D ++ A K E W V +G RFMA+W K E A+R R KR
Sbjct: 469 CQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 593
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 2.990e-15 Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 198
CES+E T+R RRLL+AG L R GRLPKR+ FG L G +R RGG+E+ W CV D++AFG
Sbjct: 188 CESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 3.740e-15 Identity = 50/125 (40.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 10 CESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWKAI----------AVKAE---IWGEIVAEGGRRFMAAWRKEEVDAARLRQEKR 333
C+S+E T+R RR+L+AG + R GRLPKR+ FG L G GRG E+ W C++ D++ F G T D ++ A K E W V +G RFMA+W K E A+R R KR
Sbjct: 575 CQSVEATVRQRRVLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 699 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93869.16824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig93869.16824.1 >prot_H-elongata_contig93869.16824.1 ID=prot_H-elongata_contig93869.16824.1|Name=mRNA_H-elongata_contig93869.16824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp MTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRRGRGGKback to top mRNA from alignment at H-elongata_contig93869:2161..2508+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig93869.16824.1 ID=mRNA_H-elongata_contig93869.16824.1|Name=mRNA_H-elongata_contig93869.16824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig93869:2161..2508+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig93869:2161..2508+ >mRNA_H-elongata_contig93869.16824.1 ID=mRNA_H-elongata_contig93869.16824.1|Name=mRNA_H-elongata_contig93869.16824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig93869:2161..2508+ (Himanthalia elongata Himel1 dioecious)back to top |