mRNA_H-elongata_contig93866.16822.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93866.16822.1
Unique NamemRNA_H-elongata_contig93866.16822.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.260e-19
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:   26 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEP-MSFDRIGNLGN 81
[Close]
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.930e-19
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:   24 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEP-MSFDRIGNLGN 79
[Close]
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.790e-19
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:   24 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEP-MSFDRIGNLGN 79
[Close]
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.920e-19
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:   90 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEP-MSFDRIGNLGN 145
[Close]
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.030e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:   21 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEP-MSFDRIGNLGN 76
[Close]
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.970e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:  197 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEP-MSFDRIGNLGN 252
[Close]
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.510e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:   24 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEP-MSFDRIGNLGN 79
[Close]
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.300e-17
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:  371 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEP-MSFDRIGNLGN 426
[Close]
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.340e-17
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:   88 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEP-MSFDRIGNLGN 143
[Close]
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.430e-17
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 ITMHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRISRLSD 171
            ITMHKSQGQT +KAVIDLG KEAC GLTFVCLSRAK+L +L++EP M FDRI  L +
Sbjct:  367 ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEP-MSFDRIGNLGN 422
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93866.16822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSF1_9PHAE1.260e-1973.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE2.930e-1973.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE5.790e-1973.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE5.920e-1973.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE1.030e-1873.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS2_9PHAE3.970e-1873.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE4.510e-1873.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFG8_9PHAE1.300e-1773.68Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE1.340e-1773.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Y8_9PHAE1.430e-1773.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93866contigH-elongata_contig93866:2171..2356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size186
Cds size180
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.3799803-UTR-H-elongata_contig93866:2170..21761622931335.3799803-UTR-H-elongata_contig93866:2170..2176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93866 2171..2176 +
1691679794.650121-UTR-H-elongata_contig93866:2170..21761691679794.650121-UTR-H-elongata_contig93866:2170..2176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93866 2171..2176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.39806-CDS-H-elongata_contig93866:2176..23561622931335.39806-CDS-H-elongata_contig93866:2176..2356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93866 2177..2356 +
1691679794.6608632-CDS-H-elongata_contig93866:2176..23561691679794.6608632-CDS-H-elongata_contig93866:2176..2356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93866 2177..2356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93866.16822.1prot_H-elongata_contig93866.16822.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93866 2177..2356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93866.16822.1

>prot_H-elongata_contig93866.16822.1 ID=prot_H-elongata_contig93866.16822.1|Name=mRNA_H-elongata_contig93866.16822.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MHKSQGQTWSKAVIDLGGKEACFGLTFVCLSRAKKLTNLLIEPTMPFDRI
SRLSDKRLF*
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mRNA from alignment at H-elongata_contig93866:2171..2356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93866.16822.1 ID=mRNA_H-elongata_contig93866.16822.1|Name=mRNA_H-elongata_contig93866.16822.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig93866:2171..2356+ (Himanthalia elongata Himel1 dioecious)
ATCACCATGCACAAGAGTCAGGGCCAGACGTGGTCAAAGGCCGTGATCGA
TTTGGGAGGAAAAGAAGCGTGTTTTGGATTGACTTTCGTCTGTTTGAGTC
GTGCTAAGAAGTTGACTAATTTGCTGATAGAACCAACAATGCCGTTCGAT
CGTATCTCAAGGTTAAGCGACAAGCGCCTGTTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig93866:2171..2356+

>mRNA_H-elongata_contig93866.16822.1 ID=mRNA_H-elongata_contig93866.16822.1|Name=mRNA_H-elongata_contig93866.16822.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig93866:2171..2356+ (Himanthalia elongata Himel1 dioecious)
ATGCACAAGAGTCAGGGCCAGACGTGGTCAAAGGCCGTGATCGATTTGGG
AGGAAAAGAAGCGTGTTTTGGATTGACTTTCGTCTGTTTGAGTCGTGCTA
AGAAGTTGACTAATTTGCTGATAGAACCAACAATGCCGTTCGATCGTATC
TCAAGGTTAAGCGACAAGCGCCTGTTCTGAATGCACAAGAGTCAGGGCCA
GACGTGGTCAAAGGCCGTGATCGATTTGGGAGGAAAAGAAGCGTGTTTTG
GATTGACTTTCGTCTGTTTGAGTCGTGCTAAGAAGTTGACTAATTTGCTG
ATAGAACCAACAATGCCGTTCGATCGTATCTCAAGGTTAAGCGACAAGCG
CCTGTTCTGA
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