mRNA_H-elongata_contig9380.16817.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9380.16817.1
Unique NamemRNA_H-elongata_contig9380.16817.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9380.16817.1 vs. uniprot
Match: D8LKM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKM9_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 2.260e-48
Identity = 100/161 (62.11%), Postives = 126/161 (78.26%), Query Frame = 3 
Query:  150 LVAVAAPSDTYLATGLFSIAAAVLVVGAGLLVASTVSGKDGLGAFLSKEKANNPFYQNTMSKIAPRTPDVLNKIRFPDLDFVEVYNQPPRAEEFLA-------DGTDN---PDASAVVATAESLRQRLLEAVQAKDYNLASSLERELASFLRQNKINFEDD 602
            L+A AAP +   A+GLF IAA V+ +GAG+LVASTV+GK+GLGAFL++EK +NPFYQ+TM+K  P+TPD+LNKIR PDLDFV+VYNQPP  ++++        D   N   PDA  V ATAE+LRQ+LL AVQAKDY+LASSLERELA+FLR+N + FE D
Sbjct:  102 LLASAAPGNPSTASGLFGIAALVIALGAGVLVASTVTGKNGLGAFLTQEKGSNPFYQDTMAKFTPKTPDILNKIRLPDLDFVDVYNQPPAPDDYVDLEQDVTFDAMANKGAPDADTV-ATAEALRQKLLMAVQAKDYDLASSLERELATFLRKNGMGFEGD 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9380.16817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKM9_ECTSI2.260e-4862.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9380contigH-elongata_contig9380:1643..6710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003600.1
Exons6
Model size1721
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9380.16817.1prot_H-elongata_contig9380.16817.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9380 2750..5734 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931334.5793884-UTR-H-elongata_contig9380:1642..27491622931334.5793884-UTR-H-elongata_contig9380:1642..2749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9380 1643..2749 -
1691679794.3625767-UTR-H-elongata_contig9380:1642..27491691679794.3625767-UTR-H-elongata_contig9380:1642..2749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9380 1643..2749 -
1622931334.6687496-UTR-H-elongata_contig9380:5734..58081622931334.6687496-UTR-H-elongata_contig9380:5734..5808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9380 5735..5808 -
1691679794.4200892-UTR-H-elongata_contig9380:5734..58081691679794.4200892-UTR-H-elongata_contig9380:5734..5808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9380 5735..5808 -
1622931334.6841736-UTR-H-elongata_contig9380:6662..67101622931334.6841736-UTR-H-elongata_contig9380:6662..6710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9380 6663..6710 -
1691679794.4281223-UTR-H-elongata_contig9380:6662..67101691679794.4281223-UTR-H-elongata_contig9380:6662..6710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9380 6663..6710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931334.5955243-CDS-H-elongata_contig9380:2749..28511622931334.5955243-CDS-H-elongata_contig9380:2749..2851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 2750..2851 -
1691679794.3732195-CDS-H-elongata_contig9380:2749..28511691679794.3732195-CDS-H-elongata_contig9380:2749..2851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 2750..2851 -
1622931334.6075356-CDS-H-elongata_contig9380:3357..34141622931334.6075356-CDS-H-elongata_contig9380:3357..3414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 3358..3414 -
1691679794.3835561-CDS-H-elongata_contig9380:3357..34141691679794.3835561-CDS-H-elongata_contig9380:3357..3414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 3358..3414 -
1622931334.6233585-CDS-H-elongata_contig9380:3927..40621622931334.6233585-CDS-H-elongata_contig9380:3927..4062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 3928..4062 -
1691679794.3927271-CDS-H-elongata_contig9380:3927..40621691679794.3927271-CDS-H-elongata_contig9380:3927..4062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 3928..4062 -
1622931334.6378233-CDS-H-elongata_contig9380:4866..49511622931334.6378233-CDS-H-elongata_contig9380:4866..4951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 4867..4951 -
1691679794.4042556-CDS-H-elongata_contig9380:4866..49511691679794.4042556-CDS-H-elongata_contig9380:4866..4951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 4867..4951 -
1622931334.6532288-CDS-H-elongata_contig9380:5621..57341622931334.6532288-CDS-H-elongata_contig9380:5621..5734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 5622..5734 -
1691679794.4121785-CDS-H-elongata_contig9380:5621..57341691679794.4121785-CDS-H-elongata_contig9380:5621..5734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9380 5622..5734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9380.16817.1

>prot_H-elongata_contig9380.16817.1 ID=prot_H-elongata_contig9380.16817.1|Name=mRNA_H-elongata_contig9380.16817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MEVPGATIELVAVAAPSDTYLATGLFSIAAAVLVVGAGLLVASTVSGKDG
LGAFLSKEKANNPFYQNTMSKIAPRTPDVLNKIRFPDLDFVEVYNQPPRA
EEFLADGTDNPDASAVVATAESLRQRLLEAVQAKDYNLASSLERELASFL
RQNKINFEDDAAK*
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mRNA from alignment at H-elongata_contig9380:1643..6710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9380.16817.1 ID=mRNA_H-elongata_contig9380.16817.1|Name=mRNA_H-elongata_contig9380.16817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5068bp|location=Sequence derived from alignment at H-elongata_contig9380:1643..6710- (Himanthalia elongata Himel1 dioecious)
CTCCGGCGTCGAGAGCACGCTTCCCGTTCAAGGCGAGGGAAGTAAGAGGT
CAGTCTGTCAGGCCGATGGTCCTAACATGACACATGTATATCCATGTACG
CGGCACGTTTCACTTCTTTGCTGGCAAACACGGCACGTTTCAAGCGCGCC
GATTCCCACTGATTTTCAGAGAGGGTGCACTGCCCCGCCCTCATACCCCA
CTGCATCCGATTTGAAGGGCTAGATGCTTCGCGAACGCGTGAACCTATAC
AATCTACGTACTGAACTCGAGTGAGAAACAACAATTGCAGTGGATCATCA
GTTTTGAATGTTGAGGCTTCAAGTTCAACGCAGCAAACAGCACGCGGCGC
AATTAAGAACATCAGTCTTGCAGTTAGTTACTGTAGTTAATTAGCGTTTC
ACAAGAGACCAGTACATACTATTGAAAAGGTTTTTGTTGCTGACAGCGGT
TGATTCAACAACCCGAACTCGGCATCAAGCGACGTCCCCCATAGCGGTTG
ATGTCCGAGAGGAGGAGGTGTGGACCCTCTGTAAGGGTTGCTATTTTAGA
AACGACGCACTGGCACGTACAATAACAATATACAAGTAGGCCCTTTCCCA
CTCCGCTCCCCAAGGTCCGCACCTCTTTGTTCGCCTTTGCGCGGACCGAG
CTTTTTCTCCCACCGGTAGTCACAGAAAAATAACAGCGCCGCGGAGGATG
TAATCGCCCGTGTTCTCGTGGATCTATCTCCAAACACATTATTGAAGTCC
CCGGCCCAAGCCCCTATCTATTTCTTAGGTATCATACTCTCTCCATTGAT
GTCAACCCTCCTTTGCCGCCTTCTCCAAATAGACTTGTCTTATGATACTG
CGCACATTCACGCCGATACATCTCCTCTTCCCTCTGGCATCACCTTTCCC
AGGCACAACTTCCGTCGGCGCTCTTTCCAGCGTGGACGGGGCAACGGTAG
TAGTAGCGGTGGCAAGTAGTGGAGGAATGGAGGTCCCGGGCGCGACCATT
GAACTCGTGGCAGTCGCCGCCCCGAGCGACACGTATCTGGCGACGGGACT
CTTCAGCATCGCCGCCGCGGTTCTGGTGGTGGGAGCAGGGTGAGAGATGG
CCAGAGGTGCCGAAATTCTCATACATTAGGAGCGTTTGCGGATACGGATG
CAGCCTCAGTTTTGCGTAATCGCGTACCTTGATTCGCGGGACTGTCTGCT
TTGACTCTGCGGAGAGCTGTTACCTCATGCTGTGCAGAATCCGGGAGTCA
GAAGCTGTGTTCATCTCTAGAGGTTGTCTTCGAGTAAGAGGTTGATGACT
GCTTTACTGTTATTGCGACAATCTTGTGAATCTTGCTACTGTGAAGTGTC
AACCAAGATTGCACCTGCGCCCGGGGTACGCGTCTACTGTTCGGCAACGA
TGGTTGTCGGTCGGTTGGTCAATCGTTCGTTCGATCTTCGAGGTCGGTTA
GGTGTTTACCCCCTCCGTTGCCAATGTAACGCGTCGCGTGGGTCGGGCGG
ATGGGGCGCCTCTACCTTATCGCCCCTTGGAGATTGGTAAGAGTTTCGAC
AGTGCAAAGTGCATTGCCGCGGCTATCGTCCCTGCCGCTCTGTTCGAGCG
TATCCGTACCGCTGTAACGTGTCGTGCCGTTGTTGTAGCTCGAGGGTACT
TCGTCGCGGTAGGGATGATGTATAGCCCCTCTACCCACGTCTTCGCAATC
GATTCGCGCTGACGAGGACTTTGCTCTTTCTGTGCGATCCCCACGGCAAC
ATTGGAAAGGCTGCTCGTGGCTTCCACCGTCTCCGGGAAGGACGGGCTAG
GAGCATTCCTCTCCAAAGAAAAGGCCAACAACCCCTTCTACCAGGCGAGT
CTACTCCGCCTAATAATATATATGTACCTTCCCTGGTACTTAGCAACCCT
AACTTCTTGGTACTGATTAAAATATTTTACGCGTGCGTACGAATCAATCG
CATCGTTCTCTAGTATTAAAGCTTCGTGTGTATGCATGTAAGCGTCTGTA
TTGTGTGTCTTGTATTTCTGTTGTGGGATGCTGCGCAAGGCGTCCGCACT
GGCGGACGCGGACGCATCCTCTTTAACCTCGCCCCCACCCCCGAGCAATA
CAACGACAACCCGCCCGATCGCTTTCTTGAAGGCCACGGAACGATAGGCT
TTTTGAGCGCAAACGTTTTCACTTAAACGATTCTTAGCAGAGGCATCGAG
TACAGCATGTTGCCCTAGCTCTCTGGGGGCGAGACTCACATTCCGGTGAT
TCGACAACACTCCGTCGTACCGAGTGCCACCCGCCCCGACGAGCGGTGGG
CCTTGAATAGCACCCGCGCGCGCGCGAGGGTTTCCCCTTGTGCTGGAGTC
TTCACTTGCGAACCGCTTACTCCAAGCATACGTTTATCGTAGCGCTGCCT
GCTAGCATTGACATCGCTTGGCGTTGTTCTGTAAAAGCGTTCGCAGAATG
CGCAAGACTGTTTCGGCTGACACTATCACTTTAGTCCCTCCTTACCCTAC
ATCAACGACCACATCACACCCTGCTCGATCTTCTCGCTCATTTCTGGTGG
TGACTGCTCCTACAGTGGTGGTGACATTGGCGTGAGTTCTCGATTCCTAC
AACCGTGACGTTTTGTTTTGTCTCGTTTTTTGCTTCCCCTCACGCCAGAA
TACCATGTCGAAGATCGCGCCTAGAACCCCCGACGTGCTCAACAAGATCC
GATTTCCCGACCTAGATTTTGTTGAGGTCTACAACCAGCCTCCTCGAGCG
GAAGAGTTCCTCGCCGACGGGACGGACAATCCGGTGAGAAAGAGGGGAAT
GAGGAACGCCATCGTAAGTTCCTTCTCTCCCTCCGTCTCGGTTGACATGC
TGGCATCCGCGCCAAGACCGTACGCATTTCATTTGTTGGCCGTTGGTCAT
TAACTGAGAGATCTCCGTCGCCCGGAAGAGCCATAGCGCAGGATCGACCC
GTCCCAGTCCCTTCGAGCAAAGCAAATGAGTTCATTTAAAAAATAAAAAT
AAAATGCTTGAGGTTTAGGAAACCTAAACCTTACATGTACATATATACAG
TCGCGATGCAGGAAACGTGTATAACGCGGTGGCATGGTAACATGGTGCGA
ACGAATGAAAACTCCGGCCGTCATTCTAGCTATTCTAGGCTGCTCGCATT
GGTCCTTCCGATGGGAGATCTGTGTGTTTGTGTGCGTGTGAGTACATGTC
GCTTTAAGACCCCTCACCTTTCTATCTTCTGCTGCATGCTGTGCCAACGC
CGTTTGTACCATGGGTGTCGATGGGGGTGGATGGGCGGAGTTCCAGGACG
CGAGCGCGGTGGTGGCCACGGCAGAGAGCCTGCGACAAAGGTTGCTAGAG
GCGGTGAGCGACGCCATCCACTCCTTCCGAGAAAATTTCGATGATCATTC
CCCCGTGTTGGTCCGACCACGCGTGTTTTAATAGTACGCCCGGCGAGTAT
CGTGAAGGCGGCTTGTTGTGGGAGTCGGCGAAGGAAAGCAAGCAGCACAT
GTTTTTTGTCAGAAATTGAGCCGCCAGTCAAAATGCCAAAATGCGCGCCC
ATCCATATGTCCCTCGTCCCATTACAAACAAGTGTCGGGGTGGGGTCCAG
TTATCACGTCACACGGACGGCGACATATGTACATTTTTACACCGCGCGTC
GGAAGGAAGAAAAAAAATCTTAAGGGCGTTCTCGAATGACGCGATGCGAG
ATGCGAGACCGAACTAAGCGTAATTTCGTGAGGAAATATTTATGCCTTGT
CTTATCGCCCACGTCCCTTGACAGACCGACGAGGTCCTTGAAAAAAATAT
CGCTCCGTTGGCGTGGAATGCGGGCGTTTGCATGATTTCCGTTTCGGCCG
CGCGCACAGGTGCAAGCAAAGGATTACAACCTGGCGTCGTCTCTGGAGCG
CGAGCTGGCGAGCTTTTTGCGGCAGAACAAGATAAACTTCGAGGACGACG
CAGCAAAGTAGAGGCCTATGCGCCGCCGATGTCCTTCCGTCGACATAGCC
GAGGAGAGAATCGGCCACTCACATTGCAGCACGGCCGTTGTCAGGACCCT
GTTGGGATGAAAACCTATTTTACACATAAGCGTTTCTGCAGCGGGGACCA
CTTTACCGTACTGCTGTAGCGTGAACATCGCCACTTTTATATTATTTTTT
TCTTTGAAGCACTCGAGCAAAACTACAGTGTTTTTTTGTGGAATTTTGAG
TGTCGCTGGATCCCTCGCTTTGTACTCGAAGTATTATATAATATTATGTA
GCAGCGAAAAAGTTGACGTACGATTGGAACACCACGACGACGTAACACGA
TTGAGCGAAGGAGAGAGTGTGGTACACACCATGCGTAGAGCGGGCGATTC
TTGCCGACCGAAGAGTGAACATTCCTTCCCGCTACAGTTTGTTCAGGTTG
AGATGCGGCGCGAGATACCCCAAAAAGTAATGGAAGATCGCCGATTAGAG
CGAATGACATGAGAACGCGACCAGCGGCGTCCTTGTCGTTAGCTGTCCGA
CTTGGGGGCTGCGCGTGACCTTATATAGCAGAGACGATACAGTGGCGGCC
GAGATCGCTGGAGGAGTTTCAGGACAGAGATAAGTAAAATAGGGGAAGAC
TTGAATGACCGGGGTGGAGTGTGTTTCCACTACGTACCAGGCTAGGAGTG
TTTAGCAGAAATAGTGGACATATTGTGTGAAGATATTATCTTTCGGTATT
TTGGGGGACTGAGAGATGATACGTTTGCGTTACGGGAGGAGGGGGAGAGG
GGTACGATGCCGTAAAAGAGGGGAGGCGGAGGTTCGGTGACGTTAAAAGG
AAGAAAGTGAAACAGGCGACGGCGATGGTCCCAAACCTGCCACGAGAGAA
GGATGGCAAAAGCGCCTGAGAACGCCGCTGTTGCGCTAGAGGTTACGGTT
GGACAAACTGACGAGGTTGTTCTTGTTGCAGCACCTGGAATGTTGGCTCA
AATTACGATTTGGACGATGCTGATTGCAATAAAACCCCTTTTTTTGAAAT
TTGTGTAATAATACCACTTGCGTTAGCCTAGTGACCTGGCCGTGTATATG
AGTACTTATAATCATATA
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Coding sequence (CDS) from alignment at H-elongata_contig9380:1643..6710-

>mRNA_H-elongata_contig9380.16817.1 ID=mRNA_H-elongata_contig9380.16817.1|Name=mRNA_H-elongata_contig9380.16817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig9380:1643..6710- (Himanthalia elongata Himel1 dioecious)
ATGGAGGTCCCGGGCGCGACCATTGAACTCGTGGCAGTCGCCGCCCCGAG
CGACACGTATCTGGCGACGGGACTCTTCAGCATCGCCGCCGCGGTTCTGG
TGGTGGGAGCAGGATGGAGGTCCCGGGCGCGACCATTGAACTCGTGGCAG
TCGCCGCCCCGAGCGACACGTATCTGGCGACGGGACTCTTCAGCATCGCC
GCCGCGGTTCTGGTGGTGGGAGCAGGGCTGCTCGTGGCTTCCACCGTCTC
CGGGAAGGACGGGCTAGGAGCATTCCTCTCCAAAGAAAAGGCCAACAACC
CCTTCTACCAGGCTGCTCGTGGCTTCCACCGTCTCCGGGAAGGACGGGCT
AGGAGCATTCCTCTCCAAAGAAAAGGCCAACAACCCCTTCTACCAGAATA
CCATGTCGAAGATCGCGCCTAGAACCCCCGACGTGCTCAACAAGATCCGA
TTTCCCGACCTAGATTTTGTTGAGGTCTACAACCAGCCTCCTCGAGCGGA
AGAGTTCCTCGCCGACGGGACGGACAATCCGAATACCATGTCGAAGATCG
CGCCTAGAACCCCCGACGTGCTCAACAAGATCCGATTTCCCGACCTAGAT
TTTGTTGAGGTCTACAACCAGCCTCCTCGAGCGGAAGAGTTCCTCGCCGA
CGGGACGGACAATCCGGACGCGAGCGCGGTGGTGGCCACGGCAGAGAGCC
TGCGACAAAGGTTGCTAGAGGCGGACGCGAGCGCGGTGGTGGCCACGGCA
GAGAGCCTGCGACAAAGGTTGCTAGAGGCGGTGCAAGCAAAGGATTACAA
CCTGGCGTCGTCTCTGGAGCGCGAGCTGGCGAGCTTTTTGCGGCAGAACA
AGATAAACTTCGAGGACGACGCAGCAAAGTAGGTGCAAGCAAAGGATTAC
AACCTGGCGTCGTCTCTGGAGCGCGAGCTGGCGAGCTTTTTGCGGCAGAA
CAAGATAAACTTCGAGGACGACGCAGCAAAGTAG
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