mRNA_H-elongata_contig93796.16814.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93796.16814.1
Unique NamemRNA_H-elongata_contig93796.16814.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93796.16814.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 65.5 bits (158), Expect = 2.880e-9
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:  326 PPFVSHYRLLE-QMIELFPSNLYQLDDQMCKGLFTGDDFCVPASQENELSEILDVE--TVEDQAFAEL 520
            PP    +RL    MIELFP N Y L DQMCKG FTGDDFCVPA +E E +E+ D+   +V DQ  AEL
Sbjct:  575 PPASYKFRLYSGTMIELFPDNRYMLGDQMCKGFFTGDDFCVPADEE-ETAELEDLVLGSVVDQTCAEL 641
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93796.16814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
K7ZUA3_ASCNO2.880e-957.35Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93796contigH-elongata_contig93796:1106..1817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size243
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93796.16814.1prot_H-elongata_contig93796.16814.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93796 1107..1456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931334.25789-UTR-H-elongata_contig93796:1105..11061622931334.25789-UTR-H-elongata_contig93796:1105..1106Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93796 1106..1106 -
1691679794.2824798-UTR-H-elongata_contig93796:1105..11061691679794.2824798-UTR-H-elongata_contig93796:1105..1106Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93796 1106..1106 -
1622931334.3002415-UTR-H-elongata_contig93796:1737..18171622931334.3002415-UTR-H-elongata_contig93796:1737..1817Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93796 1738..1817 -
1691679794.3070247-UTR-H-elongata_contig93796:1737..18171691679794.3070247-UTR-H-elongata_contig93796:1737..1817Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93796 1738..1817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931334.2705872-CDS-H-elongata_contig93796:1106..11841622931334.2705872-CDS-H-elongata_contig93796:1106..1184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93796 1107..1184 -
1691679794.2905312-CDS-H-elongata_contig93796:1106..11841691679794.2905312-CDS-H-elongata_contig93796:1106..1184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93796 1107..1184 -
1622931334.2864876-CDS-H-elongata_contig93796:1372..14561622931334.2864876-CDS-H-elongata_contig93796:1372..1456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93796 1373..1456 -
1691679794.2987843-CDS-H-elongata_contig93796:1372..14561691679794.2987843-CDS-H-elongata_contig93796:1372..1456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93796 1373..1456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93796.16814.1

>prot_H-elongata_contig93796.16814.1 ID=prot_H-elongata_contig93796.16814.1|Name=mRNA_H-elongata_contig93796.16814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MIELFPSNLYQLDDQMCKGLFTGDDFCVPASQENELSEILDVETVEDQAF
AEL*
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mRNA from alignment at H-elongata_contig93796:1106..1817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93796.16814.1 ID=mRNA_H-elongata_contig93796.16814.1|Name=mRNA_H-elongata_contig93796.16814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=712bp|location=Sequence derived from alignment at H-elongata_contig93796:1106..1817- (Himanthalia elongata Himel1 dioecious)
GTGGCCTTCCTGAGGCCAGGGATAGTAACGAGGGATCCATTCCTGCAGCG
TCATACAGGTTCCGCCTATACAGCGGCAAGGTGAACCGGCCAGGAAACAC
ACGAAAAAGCGGAGAAGATGATTTCCGTGTCAACCCCCTCGTATTTTACA
TGTTTTCCCCATATACCACGGCGGTTGATTGCTTTGTTTGATTGCCTCAT
GTTGTACAGAACAATAAGGCACAAAATGCTCATTTTACTCCTGCCGTTAC
GGCCATATGGTGGGAAGAGCATTGTCTGAAATAACGCGCCCTAGATCTAA
CATTAACAAAAACGATGTATCGCCCCCACCCTTCGTTTCCCATTATCGTC
TGCTCGAGCAGATGATTGAGCTGTTCCCTAGCAATCTCTACCAGCTGGAC
GACCAAATGTGCAAGGGATTGTTTACCGGTGACGACTTCTGCGTGGTAAG
TATGTGGCCGTCCATTGTGAATCTGTACACTTGGATCCTTCCCGAGACGC
TCAATGTATAAATATCTTTACTTCGATTCTCCTCTTGCGTTATTGGGTAC
GGAGTTCGACGTACGAGCTATATGATGCACCAGAGAGCCCATACCAATAT
TTGCCCATTTGACGCACGTACTCTTACTCGCAGCCGGCGAGCCAGGAGAA
TGAATTGTCGGAGATTCTCGATGTCGAGACGGTCGAGGACCAAGCCTTCG
CTGAGCTGTAAT
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Coding sequence (CDS) from alignment at H-elongata_contig93796:1106..1817-

>mRNA_H-elongata_contig93796.16814.1 ID=mRNA_H-elongata_contig93796.16814.1|Name=mRNA_H-elongata_contig93796.16814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig93796:1106..1817- (Himanthalia elongata Himel1 dioecious)
ATGATTGAGCTGTTCCCTAGCAATCTCTACCAGCTGGACGACCAAATGTG
CAAGGGATTGTTTACCGGTGACGACTTCTGCGTGATGATTGAGCTGTTCC
CTAGCAATCTCTACCAGCTGGACGACCAAATGTGCAAGGGATTGTTTACC
GGTGACGACTTCTGCGTGCCGGCGAGCCAGGAGAATGAATTGTCGGAGAT
TCTCGATGTCGAGACGGTCGAGGACCAAGCCTTCGCTGAGCTGTAACCGG
CGAGCCAGGAGAATGAATTGTCGGAGATTCTCGATGTCGAGACGGTCGAG
GACCAAGCCTTCGCTGAGCTGTAA
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