mRNA_H-elongata_contig93754.16809.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93754.16809.1
Unique NamemRNA_H-elongata_contig93754.16809.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: D7G8K5_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 1.900e-59
Identity = 130/241 (53.94%), Postives = 149/241 (61.83%), Query Frame = 1
Query:   10 KVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALELDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKSVDSGVQRGQAPLNSSQPGVAPPGISDEDVFDLVEGFSRENQPSAADGGPGVGDGRGMYASTLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVVS 732
            +VNLLKRLLRP++ GVEVRSVDGFQGGEKEAIVLSLVRSN G++VGFLADARRLNVAVTRAKRHVA+VCDAECCGSD FI RLLRH+E+RGEYRSALEL P             + A S+                                           +SDE+V   V+ F+ E +P+  +     GDG G     LELP +LT RQRAL HE AE LGLGH S GEG  R LV+S
Sbjct:  662 QVNLLKRLLRPEHPGVEVRSVDGFQGGEKEAIVLSLVRSNAGKKVGFLADARRLNVAVTRAKRHVAIVCDAECCGSDPFIGRLLRHVEDRGEYRSALELTPETCG---------DFAESSVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEK--------LSDEEVLRRVQEFA-EQEPTHDNDEEEKGDGEGR----LELPPQLTARQRALAHETAEWLGLGHVSVGEGPRRVLVLS 880          
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: A0A6H5KL97_9PHAE (R3H domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL97_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 6.460e-38
Identity = 97/199 (48.74%), Postives = 115/199 (57.79%), Query Frame = 1
Query:  136 RRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALELDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKSVDSGVQRGQAPLNSSQPGVAPPGISDEDVFDLVEGFSRENQPSAADGGPGVGDGRGMYASTLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVVS 732
            ++VGFLADARRLNVAVTRAKRHVA+VCDAECCGSD FI RLLRH+E+RGEYRSALEL P  D   ++              T  G G+  +    Y       + G+              +SDE+V   V+GF+ + +    D     GD  G     LELP ELT RQRAL HE AE LGLGH S GEG  R LV+S
Sbjct:    7 KKVGFLADARRLNVAVTRAKRHVAIVCDAECCGSDPFIGRLLRHVEDRGEYRSALELTPETDGDFAESAAXXXXXXXXXXRTAAG-GVAGRKGKKYG------EEGEEEK-----------LSDEEVLRRVQGFAEQERTYDNDEQE-KGDDEGR----LELPPELTARQRALAHETAEWLGLGHVSVGEGPRRVLVLS 182          
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: UPI001B34AECD (DNA-binding protein SMUBP-2 isoform X1 n=3 Tax=Ochotona curzoniae TaxID=130825 RepID=UPI001B34AECD)

HSP 1 Score: 142 bits (357), Expect = 8.130e-35
Identity = 100/250 (40.00%), Postives = 134/250 (53.60%), Query Frame = 1
Query:   10 KVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALELDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKSVDSGVQRGQAPLNSSQPGVAPPGISDEDVFDLVEGFSRENQPSAADGGPGVGDGRGMYA-------STLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVVSCR 738
            +V+LL++ L  ++  +E+RSVDGFQG EKEA++LSLVRSN    VGFLA+ RR+NVAVTRA+RHVA+VCD+    S  F++ LL H  E G+ R+A E     D I  DH Y +E  + +      G+  +   D    +   G   G+ P    +PG   PG        L  G      PSA   G G+   R + A       + LE P  L   +R  VH++AE LGL H S GEG  R + VS R
Sbjct:  543 QVDLLRQSLAHRHPDLEIRSVDGFQGREKEAVILSLVRSNRKGEVGFLAEDRRINVAVTRARRHVAIVCDSRTVTSHPFLKTLLSHFTEHGDVRTAFEY---LDDIVPDH-YSHESTQGH------GQAAQKPRDAAMAATKPG--GGRRP--GRKPGGKVPGPPTHSQASLNGG-----SPSAVGSGDGLEHFRALLAEFVAGEQTRLEFPASLNSHERLRVHQLAEELGLRHESSGEGKARHITVSKR 773          
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: UPI0012AC41A7 (DNA-binding protein SMUBP-2-like n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=UPI0012AC41A7)

HSP 1 Score: 138 bits (348), Expect = 3.240e-34
Identity = 92/246 (37.40%), Postives = 131/246 (53.25%), Query Frame = 1
Query:   10 KVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALE----LDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKSVDSGVQRGQAPLNSSQPGVAPPGIS-DEDVFDLV-EGFSRENQPSAADGGPGVGDGRGMYASTLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVV 729
            +V++L+  L  +Y  +E++SVDGFQG EKEA++LS VRSN    VGFLA+ RR+NVAVTRA+RHVA++CD+   GS AF+ RLL H  + G+ R+A E    L P   +   + Q   +   +  P T    G + ++    K+     Q  +   ++S PGV  PG   D + F  V E F    +                  + L+ P  L+P  R LVH +AE  GL H S GEG +R + V
Sbjct:   94 QVDMLREHLCHRYPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAIICDSHTVGSQAFLGRLLEHFRQHGQVRTAFEYLDDLVPENYSHGGERQQSTKAPAAPSPKTQPAAGRKPKAAAAAKAAPQ-KQAARCSPSASGPGVDSPGTKGDTNKFKAVLEAFLESGE------------------TQLDFPSSLSPHDRLLVHLLAEEHGLQHVSTGEGRDRYISV 320          
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: A0A6P4T2P5_PANPR (DNA-binding protein SMUBP-2 isoform X1 n=37 Tax=Felidae TaxID=9681 RepID=A0A6P4T2P5_PANPR)

HSP 1 Score: 139 bits (351), Expect = 5.150e-34
Identity = 103/256 (40.23%), Postives = 134/256 (52.34%), Query Frame = 1
Query:   10 KVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALE-LD---PSPDAIESDHQYDYECARSNEPVTVDGR--GIRVQSDIVYKSVDSGVQRGQAPLNSSQPGVAPPGISDEDVFDLVEGFSRENQPSAADGGPGVGDGRGMYA-------STLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVVSCR 738
            +V+LL++ L  ++  +E++SVDGFQG EKEA+VLS VRSN    VGFLA+ RR+NVAVTRA+RHVAVVCD+    S AF++ L+ H  E GE R+A E LD   P   + ES   +    AR  +P    G+  G R +  +      +G+QR         PG  P G        L  G      P AADGG      R   A       + LE P  L    R  +H++AE  GL H S GEG  R + VS R
Sbjct:  541 QVDLLRQSLAHRHPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVVCDSRTVNSHAFLKTLVDHFTEHGEVRTAFEYLDDIVPENYSHESSQGHGQAGARPRDPAAAAGKPPGSRPREGVQEALAAAGLQR-------KTPGGKPSGPEVGSQPSLNGGGLC---PEAADGGDRADRFRAEIAEFVASENTRLEFPASLNSHDRMWIHQIAEEHGLRHDSTGEGKKRFITVSKR 786          
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: UPI00094E5627 (DNA-binding protein SMUBP-2 isoform X3 n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094E5627)

HSP 1 Score: 139 bits (350), Expect = 6.410e-34
Identity = 90/246 (36.59%), Postives = 135/246 (54.88%), Query Frame = 1
Query:   10 KVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALELDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKSVDSGVQRGQA--PLNSSQPGVAPPGIS---DEDVFDLVEGFSRENQPSAADGGPGVGDGRGMYASTLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVVS 732
            +V+LL++ L  ++  +E++SVDGFQG EKEA+VLSLVRSN    VGFLA+ RR+NVAVTRA+RHVA+VCD +   + AF++ L+ H+ E GE R+A E     D +  ++  D++  + +   T    G + +  +  KS  S  Q  +   P+ +    +A          ++ ++VE F +                  +  S LE P       R LVH++AE LGL H SKGEG +R + VS
Sbjct:  388 QVDLLRQKLSARHPALEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRARRHVAIVCDTQTVQNHAFLKTLVHHVTEYGEVRTAFEY--LQDIVPQNYVRDHKDTKPDTSTTQKPEGKKPKP-VPKKSSGSSTQANKRNNPIKACVSALAEEEQKRNRQSEIREMVENFMKN-----------------LSKSELEFPPSFNSHDRLLVHQIAEELGLTHQSKGEGKDRCITVS 613          
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: A0A7L1NCZ1_RHICY (SMBP2 protein (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1NCZ1_RHICY)

HSP 1 Score: 139 bits (350), Expect = 6.910e-34
Identity = 103/257 (40.08%), Postives = 131/257 (50.97%), Query Frame = 1
Query:   10 KVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALE-LDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKS-----VDSGVQRGQAPLNSSQPGVAPPGISDEDVFDLVEGFSRENQPSAADGGPGVGDGRGMY-----------ASTLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVV 729
            +V+LL+  L  ++  +EVRSVDGFQG EKEA++LSLVRSN    VGFLA+ RR+NVAVTRA+RHVA++CD+   GS  F+ RLL H  + GE RSA E LD   D +   +       R          G R Q     +        +G  +G+A       G +P             G SR+   S     PG GDG G +           A  L+LP  L+P +R LVH  AE LGL HAS G G  R L V
Sbjct:  516 QVDLLREHLCQQHPQLEVRSVDGFQGREKEAVILSLVRSNRKGEVGFLAEERRINVAVTRARRHVAIICDSRTVGSQPFLRRLLGHFTQHGEQRSAFEYLD---DLVPEGYPQQSRGERPPGAKPPAATGPRAQPPPRRRGKAAAVAGTGGHKGEA-------GGSP-------------GTSRQRAAS-----PGAGDGAGRWRAMLEAFLQSSAEQLDLPPALSPHERMLVHAAAEQLGLQHASSGHGRQRYLSV 744          
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: A0A3Q2YBK8_HIPCM (Immunoglobulin mu DNA binding protein 2 n=3 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2YBK8_HIPCM)

HSP 1 Score: 139 bits (350), Expect = 6.970e-34
Identity = 90/246 (36.59%), Postives = 135/246 (54.88%), Query Frame = 1
Query:   10 KVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALELDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKSVDSGVQRGQA--PLNSSQPGVAPPGIS---DEDVFDLVEGFSRENQPSAADGGPGVGDGRGMYASTLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVVS 732
            +V+LL++ L  ++  +E++SVDGFQG EKEA+VLSLVRSN    VGFLA+ RR+NVAVTRA+RHVA+VCD +   + AF++ L+ H+ E GE R+A E     D +  ++  D++  + +   T    G + +  +  KS  S  Q  +   P+ +    +A          ++ ++VE F +                  +  S LE P       R LVH++AE LGL H SKGEG +R + VS
Sbjct:  542 QVDLLRQKLSARHPALEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRARRHVAIVCDTQTVQNHAFLKTLVHHVTEYGEVRTAFEY--LQDIVPQNYVRDHKDTKPDTSTTQKPEGKKPKP-VPKKSSGSSTQANKRNNPIKACVSALAEEEQKRNRQSEIREMVENFMKN-----------------LSKSELEFPPSFNSHDRLLVHQIAEELGLTHQSKGEGKDRCITVS 767          
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: A0A803Y3T0_MELGA (Uncharacterized protein n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=A0A803Y3T0_MELGA)

HSP 1 Score: 138 bits (348), Expect = 7.740e-34
Identity = 92/246 (37.40%), Postives = 131/246 (53.25%), Query Frame = 1
Query:   10 KVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALE----LDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKSVDSGVQRGQAPLNSSQPGVAPPGIS-DEDVFDLV-EGFSRENQPSAADGGPGVGDGRGMYASTLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVV 729
            +V++L+  L  +Y  +E++SVDGFQG EKEA++LS VRSN    VGFLA+ RR+NVAVTRA+RHVA++CD+   GS AF+ RLL H  + G+ R+A E    L P   +   + Q   +   +  P T    G + ++    K+     Q  +   ++S PGV  PG   D + F  V E F    +                  + L+ P  L+P  R LVH +AE  GL H S GEG +R + V
Sbjct:  146 QVDMLREHLCHRYPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAIICDSHTVGSQAFLGRLLEHFRQHGQVRTAFEYLDDLVPENYSHGGERQQSTKAPAAPSPKTQPAAGRKPKAAAAAKAAPQ-KQAARCSPSASGPGVDSPGTKGDTNKFKAVLEAFLESGE------------------TQLDFPSSLSPHDRLLVHLLAEEHGLQHVSTGEGRDRYISV 372          
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Match: A0A1S3W5L3_ERIEU (DNA-binding protein SMUBP-2 n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3W5L3_ERIEU)

HSP 1 Score: 138 bits (348), Expect = 1.290e-33
Identity = 97/251 (38.65%), Postives = 138/251 (54.98%), Query Frame = 1
Query:   10 KVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGFLADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSALE----LDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKSVDSGVQRGQAPLNSSQPGVAPP--GISDEDVF-DLVEGFSRENQPSAADGGPGVGDGRGMYASTLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVVSCRG 741
            +V+LL++ L P++  +E+RSVDGFQG EKEA++LSLVRSN    VGFLA+ RR+NVAVTRA+RHVA+VCD+   GS  F+  L+ HI   G+ R+A E    L P   + E         A+S    T   +  R + ++      +   R +   + ++P +AP   G    D F +L+  F              + DGR    + L+ P  L+  +R  VH++AE LGL H S GEG +R L VS RG
Sbjct:  539 QVDLLRQSLEPQHPELEIRSVDGFQGREKEAVLLSLVRSNRKGEVGFLAEDRRINVAVTRARRHVALVCDSRTVGSHPFLRTLVEHITAHGQVRTAFEYLDDLVPENYSHEGFQGPGPAAAKSQGTATSARKPPRQRREVARPEQKAAGGRPRGLESRTRPSLAPTEGGPQRADRFRELLVEF--------------LADGR----TRLDFPASLSAHERLRVHQLAEELGLRHESSGEGRDRFLTVSKRG 771          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93754.16809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8K5_ECTSI1.900e-5953.94R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KL97_9PHAE6.460e-3848.74R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI001B34AECD8.130e-3540.00DNA-binding protein SMUBP-2 isoform X1 n=3 Tax=Och... [more]
UPI0012AC41A73.240e-3437.40DNA-binding protein SMUBP-2-like n=1 Tax=Meleagris... [more]
A0A6P4T2P5_PANPR5.150e-3440.23DNA-binding protein SMUBP-2 isoform X1 n=37 Tax=Fe... [more]
UPI00094E56276.410e-3436.59DNA-binding protein SMUBP-2 isoform X3 n=1 Tax=Hip... [more]
A0A7L1NCZ1_RHICY6.910e-3440.08SMBP2 protein (Fragment) n=1 Tax=Rhinopomastus cya... [more]
A0A3Q2YBK8_HIPCM6.970e-3436.59Immunoglobulin mu DNA binding protein 2 n=3 Tax=Sy... [more]
A0A803Y3T0_MELGA7.740e-3437.40Uncharacterized protein n=1 Tax=Meleagris gallopav... [more]
A0A1S3W5L3_ERIEU1.290e-3338.65DNA-binding protein SMUBP-2 n=1 Tax=Erinaceus euro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93754contigH-elongata_contig93754:40..1211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue1.2e-52
Seed eggNOG ortholog2880.D7G8K5
Preferred nameIGHMBP2
KEGG koko:K19036,ko:K19783
GOsGO:0000049,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006310,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022402,GO:0022607,GO:0022616,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032574,GO:0032575,GO:0032991,GO:0033202,GO:0033203,GO:0033260,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043603,GO:0043604,GO:0043621,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044786,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:0140098,GO:0140110,GO:0150034,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902679,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903506,GO:1903507,GO:1990837,GO:1990904,GO:1990955,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ATP-dependent 5'-3' RNA helicase activity
EggNOG OGsCOG1112@1,KOG1803@2759
EC3.6.4.12,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03012,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-14_003340.1
Exons2
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931333.8264623-CDS-H-elongata_contig93754:39..1721622931333.8264623-CDS-H-elongata_contig93754:39..172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93754 40..172 +
1691679794.0854077-CDS-H-elongata_contig93754:39..1721691679794.0854077-CDS-H-elongata_contig93754:39..172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93754 40..172 +
1622931333.838533-CDS-H-elongata_contig93754:597..12111622931333.838533-CDS-H-elongata_contig93754:597..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93754 598..1211 +
1691679794.1003559-CDS-H-elongata_contig93754:597..12111691679794.1003559-CDS-H-elongata_contig93754:597..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93754 598..1211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93754.16809.1prot_H-elongata_contig93754.16809.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93754 40..1211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93754.16809.1

>prot_H-elongata_contig93754.16809.1 ID=prot_H-elongata_contig93754.16809.1|Name=mRNA_H-elongata_contig93754.16809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
FFSKVNLLKRLLRPKYSGVEVRSVDGFQGGEKEAIVLSLVRSNEGRRVGF
LADARRLNVAVTRAKRHVAVVCDAECCGSDAFIERLLRHIEERGEYRSAL
ELDPSPDAIESDHQYDYECARSNEPVTVDGRGIRVQSDIVYKSVDSGVQR
GQAPLNSSQPGVAPPGISDEDVFDLVEGFSRENQPSAADGGPGVGDGRGM
YASTLELPVELTPRQRALVHEMAEGLGLGHASKGEGINRTLVVSCRGRI
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mRNA from alignment at H-elongata_contig93754:40..1211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93754.16809.1 ID=mRNA_H-elongata_contig93754.16809.1|Name=mRNA_H-elongata_contig93754.16809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1172bp|location=Sequence derived from alignment at H-elongata_contig93754:40..1211+ (Himanthalia elongata Himel1 dioecious)
TTTTTTTCAAAGGTGAACCTGCTCAAGCGTTTGCTACGCCCAAAGTACAG CGGAGTGGAGGTTCGTTCCGTGGACGGCTTTCAGGGCGGCGAGAAGGAGG CTATTGTGCTGAGCCTGGTCCGTAGCAACGAAGGTGGCGGCTACAGATGT ACACTATTATTAGTATTATAAAGATTGACTATGTAATATAAAAGGTTGGA AAAAAGAAGAAAATAGGAAATTGCTAACGATTTCAGAACATATATATTTT CTTGTTGCCTATCATTGGAGAACTTCCGCGGAGCACTCCTTAATCCTGCT TGCCTTCTCTTGCCGGCAATGATGCTGGAGGGGATGTTGTCGCTTCCCCC CCCCCACTACTCTTATCACCAACGTTCAGTGTATCGACTCATTGTCTCTC TCTCTCTCTTCTCTGAAGCCTGCCTACGGTATGCTTTCCATACTTTTACT ACTCTATGTAGGAGGCCTATATTTTGTCACCCCGGACGACGTTTTCTTGC CACCCCTGTGTTGCTCGGTATTTACCTCCGTCCCTCCCTCCCACGCACGA TGCAACAGGAAGGCGGGTAGGGTTCCTCGCGGACGCGCGGCGGCTCAACG TGGCCGTGACCCGCGCCAAGCGCCACGTCGCCGTTGTGTGCGACGCCGAG TGCTGCGGGTCGGACGCGTTCATCGAGCGCCTCCTCAGGCACATCGAGGA GAGGGGCGAATATCGGAGTGCCCTCGAGCTCGACCCCAGCCCGGATGCAA TCGAGTCGGACCATCAATATGACTATGAGTGTGCGAGGAGTAATGAACCA GTCACCGTCGATGGAAGGGGGATAAGAGTCCAAAGTGATATCGTTTATAA AAGTGTCGACAGCGGCGTGCAGAGGGGACAGGCGCCGCTAAATTCGTCAC AACCTGGAGTTGCTCCGCCGGGGATTTCGGACGAGGATGTCTTTGATCTA GTGGAGGGGTTTTCCCGCGAGAACCAGCCGTCCGCCGCTGATGGGGGGCC TGGCGTTGGGGACGGGAGAGGGATGTATGCGTCGACGCTGGAACTTCCCG TGGAGCTCACCCCTCGACAGAGAGCCCTCGTGCATGAAATGGCGGAAGGA CTGGGACTGGGGCATGCGAGTAAAGGAGAAGGGATCAATCGGACCCTCGT GGTGTCGTGTAGGGGCCGAATA
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Coding sequence (CDS) from alignment at H-elongata_contig93754:40..1211+

>mRNA_H-elongata_contig93754.16809.1 ID=mRNA_H-elongata_contig93754.16809.1|Name=mRNA_H-elongata_contig93754.16809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig93754:40..1211+ (Himanthalia elongata Himel1 dioecious)
TTTTTTTCAAAGGTGAACCTGCTCAAGCGTTTGCTACGCCCAAAGTACAG
CGGAGTGGAGGTTCGTTCCGTGGACGGCTTTCAGGGCGGCGAGAAGGAGG
CTATTGTGCTGAGCCTGGTCCGTAGCAACGAAGTTTTTTTCAAAGGTGAA
CCTGCTCAAGCGTTTGCTACGCCCAAAGTACAGCGGAGTGGAGGTTCGTT
CCGTGGACGGCTTTCAGGGCGGCGAGAAGGAGGCTATTGTGCTGAGCCTG
GTCCGTAGCAACGAAGGAAGGCGGGTAGGGTTCCTCGCGGACGCGCGGCG
GCTCAACGTGGCCGTGACCCGCGCCAAGCGCCACGTCGCCGTTGTGTGCG
ACGCCGAGTGCTGCGGGTCGGACGCGTTCATCGAGCGCCTCCTCAGGCAC
ATCGAGGAGAGGGGCGAATATCGGAGTGCCCTCGAGCTCGACCCCAGCCC
GGATGCAATCGAGTCGGACCATCAATATGACTATGAGTGTGCGAGGAGTA
ATGAACCAGTCACCGTCGATGGAAGGGGGATAAGAGTCCAAAGTGATATC
GTTTATAAAAGTGTCGACAGCGGCGTGCAGAGGGGACAGGCGCCGCTAAA
TTCGTCACAACCTGGAGTTGCTCCGCCGGGGATTTCGGACGAGGATGTCT
TTGATCTAGTGGAGGGGTTTTCCCGCGAGAACCAGCCGTCCGCCGCTGAT
GGGGGGCCTGGCGTTGGGGACGGGAGAGGGATGTATGCGTCGACGCTGGA
ACTTCCCGTGGAGCTCACCCCTCGACAGAGAGCCCTCGTGCATGAAATGG
CGGAAGGACTGGGACTGGGGCATGCGAGTAAAGGAGAAGGGATCAATCGG
ACCCTCGTGGTGTCGTGTAGGGGCCGAATAGAAGGCGGGTAGGGTTCCTC
GCGGACGCGCGGCGGCTCAACGTGGCCGTGACCCGCGCCAAGCGCCACGT
CGCCGTTGTGTGCGACGCCGAGTGCTGCGGGTCGGACGCGTTCATCGAGC
GCCTCCTCAGGCACATCGAGGAGAGGGGCGAATATCGGAGTGCCCTCGAG
CTCGACCCCAGCCCGGATGCAATCGAGTCGGACCATCAATATGACTATGA
GTGTGCGAGGAGTAATGAACCAGTCACCGTCGATGGAAGGGGGATAAGAG
TCCAAAGTGATATCGTTTATAAAAGTGTCGACAGCGGCGTGCAGAGGGGA
CAGGCGCCGCTAAATTCGTCACAACCTGGAGTTGCTCCGCCGGGGATTTC
GGACGAGGATGTCTTTGATCTAGTGGAGGGGTTTTCCCGCGAGAACCAGC
CGTCCGCCGCTGATGGGGGGCCTGGCGTTGGGGACGGGAGAGGGATGTAT
GCGTCGACGCTGGAACTTCCCGTGGAGCTCACCCCTCGACAGAGAGCCCT
CGTGCATGAAATGGCGGAAGGACTGGGACTGGGGCATGCGAGTAAAGGAG
AAGGGATCAATCGGACCCTCGTGGTGTCGTGTAGGGGCCGAATA
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