mRNA_H-elongata_contig93742.16808.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: D7FVR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR0_ECTSI) HSP 1 Score: 291 bits (746), Expect = 2.380e-91 Identity = 160/299 (53.51%), Postives = 182/299 (60.87%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLPFGAPDIGREFL-----STSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVLAMEGLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREACSRISD 882
GNEADV+LYL A+GLMWENAPAF ALLVFAEHRFYGESLPFGAPD REFL T QALADYARL++ L++EL AE APVIAFGGSYGGMLA+WLRLKYPH+VHGA+AASAPVLA+EGL RPTP+PE+FA TVT AAGPAGGA + C+AN P+G+ AL+ELAWW R+AFDYLAMGN+PY TGY+LN G VELP WPLREACS ++D
Sbjct: 148 GNEADVSLYLEASGLMWENAPAFNALLVFAEHRFYGESLPFGAPDKRREFLRQATAGTPQALADYARLVTALKQELGAEGAPVIAFGGSYGGMLASWLRLKYPHIVHGAIAASAPVLALEGLHRPTPNPEAFAETVTAAAGPAGGAADSCAAN-------------------------------------------------------------------------------------------PRGDGALVELAWWARAAFDYLAMGNFPYATGYMLNSGEVELPPWPLREACSYLAD 355
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: A0A7S3FQQ3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FQQ3_9CHLO) HSP 1 Score: 215 bits (547), Expect = 1.730e-62 Identity = 128/289 (44.29%), Postives = 161/289 (55.71%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLPFGAPDIGREFLSTSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVLAMEGLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREAC 867
GNEADVTLYL ATG MWENAP ALLVFAEHR+YGES PFGA ++L++ QALADYA LI L+ + A +PVIAFGGSYGGML++W R+KYPHVV GA AASAP+ + G P D SFA VT A GA E CS NVR ++ A+ + +G A R+ RV R+C G + +D + L +W +++FDY+AMGNYPYP+ Y+LNG G +LPA+P+R AC
Sbjct: 132 GNEADVTLYLNATGFMWENAPEVGALLVFAEHRYYGESKPFGADMSNLQYLTSEQALADYADLIEYLKTDFGAVKSPVIAFGGSYGGMLSSWFRMKYPHVVDGAFAASAPIWSFLG-EYPPYDAGSFAKVVTYDATREAGAAEYCSMNVRNSWQAVRNESGTAEGRN-----------------------------------------------------------RVREAFRLCDGVPLESDDNVTALLYWAQTSFDYMAMGNYPYPSSYMLNGKG-DLPAFPMRVAC 359
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: A0A8J9R8Q3_9CHLO (Lysosomal Pro-X carboxypeptidase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9R8Q3_9CHLO) HSP 1 Score: 208 bits (529), Expect = 4.440e-60 Identity = 125/293 (42.66%), Postives = 166/293 (56.66%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLPFG-APDIGREFLSTSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVLAMEGLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREACSRI 876
GNEADVTLYL ATG+MWE+AP+F ALLVFAEHR+YGES PF A ++L++ QA+ADYA L+ L+ E +AE + VI FGGSYGGMLA W+R+KYPH++ GA+A SAP+ + G P D S+A VTR A GG+ C++NVR+A++ + E GR G + +A +RVC R+ D ++ LA W SA+DY+AMGNYPYP+ YILNG G+ LPA+P+R AC +
Sbjct: 78 GNEADVTLYLNATGIMWESAPSFGALLVFAEHRYYGESKPFKKALRHHMQYLTSEQAMADYAELVMELKEEFKAESSAVIGFGGSYGGMLATWMRIKYPHILDGAIAGSAPIWSYLG-EDPPYDSGSYAKIVTRDASEEGGSAPACASNVRKAWSTLF------------------------EMGRNDSGRGKIETA-----------------------------------MRVCP-RLLNSSDDVMALANWASSAWDYMAMGNYPYPSTYILNGMGI-LPAYPVRVACESL 308
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: A0A2P6TKN8_CHLSO (Thioredoxin-dependent peroxiredoxin n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TKN8_CHLSO) HSP 1 Score: 212 bits (540), Expect = 1.440e-58 Identity = 127/298 (42.62%), Postives = 162/298 (54.36%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLPFGAPDIGRE----FLSTSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVLAMEGLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREACSRISD 882
GNEADVTLYL TGLMWE AP ALLVFAEHRFYG+S PF + ++ +L+T QA+ADYA LI L+ EL+ APVI FGGSYGGMLA W RLKYPH++ GA+AASAP+ +G P DP +FA VT+ A P GG+ E C+ NVR+ + A L+ LG E AI ++ +R+C + E + L W SA+DY+AMGNYPYP+ YI+NG LPA+P+R AC ++D
Sbjct: 2080 GNEADVTLYLNNTGLMWELAPRHHALLVFAEHRFYGQSKPFKPSKLRKQKHMGYLTTEQAMADYATLIWELKEELKDPDAPVIGFGGSYGGMLATWFRLKYPHLLDGAIAASAPIWTYKG-EDPPVDPGAFARIVTQDASPEGGSAEACAQNVRQTWRA----------------------------------LQDLGGTEEGRQAI-------------------------SQAMRLCEDSALESEGDVTALRDWAASAWDYMAMGNYPYPSSYIINGAQPPLPAFPVRAACEHLAD 2317
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: A0A4D9D674_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D674_9STRA) HSP 1 Score: 202 bits (515), Expect = 1.500e-58 Identity = 130/302 (43.05%), Postives = 165/302 (54.64%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLP---FGAPDIGREFLSTSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVL------AMEGLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREACSRIS 879
GNEADVTLYL A+GLMWENAP F ALLVFAEHR+YG+S P F A + ++LS+ QALADYARLI L+ EL + +PVIAFGGSYGGMLA+W RL YPH+V GA+A SAPVL EG+ ESF+ VTR A P GG+ C+ NVR A+ P + D+A++ + + R+C G + ED L L W +SA+ Y+AMGNYP+P+ Y+LNG G LPAWP+R AC ++
Sbjct: 98 GNEADVTLYLNASGLMWENAPEFGALLVFAEHRYYGKSQPLQPFTAHKM--DYLSSEQALADYARLIIALKTELNSPDSPVIAFGGSYGGMLASWWRLLYPHLVSGAIAGSAPVLDFEPEVGKEGI-------ESFSYIVTRDASPEGGSNAYCADNVRAAW---------------PVIKDLAASVTGRQE--------------------------------------------LTERFRICQGALATAEDVDL-LFGWLQSAWAYMAMGNYPFPSTYVLNGRGT-LPAWPVRVACESLN 329
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: A0A1D2A5Y0_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A5Y0_AUXPR) HSP 1 Score: 200 bits (508), Expect = 7.760e-58 Identity = 125/295 (42.37%), Postives = 155/295 (52.54%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLPFGAPDI-GREFLSTSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVLAMEGLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREACSRISD 882
GNEADVTLYL +GLMWE P ALLVFAEHR+YGES PF +L+T QA+ADYA LI LR EL APV+ FGGSYGGMLAAW R+KYPH++ GA+A SAP+ G P D FAA VTR A GG+ C AN R + + D+E GR K +++ L +C+ P+ + LA W + A+DYLAMGNYPYP+GY+LNG G ELPA+P+R AC ++D
Sbjct: 94 GNEADVTLYLNNSGLMWELGPKHSALLVFAEHRYYGESKPFKKRTRHSMHWLTTEQAMADYAELIWELRTELGDVDAPVVGFGGSYGGMLAAWFRMKYPHLLDGAIAGSAPIWTFLG-EDPAYDAGGFAAVVTRDASEEGGSAPACVANARAGWKLLFK-------------------LGDSEAGRHK----------------------------------------LSQALGLCSRAAPRTSADVEALAEWLQGAWDYLAMGNYPYPSGYMLNGDG-ELPAYPVRVACQHLAD 327
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: A0A087SS73_AUXPR (Lysosomal Pro-X carboxypeptidase n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SS73_AUXPR) HSP 1 Score: 200 bits (508), Expect = 1.260e-57 Identity = 125/295 (42.37%), Postives = 155/295 (52.54%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLPFGAPDI-GREFLSTSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVLAMEGLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREACSRISD 882
GNEADVTLYL +GLMWE P ALLVFAEHR+YGES PF +L+T QA+ADYA LI LR EL APV+ FGGSYGGMLAAW R+KYPH++ GA+A SAP+ G P D FAA VTR A GG+ C AN R + + D+E GR K +++ L +C+ P+ + LA W + A+DYLAMGNYPYP+GY+LNG G ELPA+P+R AC ++D
Sbjct: 44 GNEADVTLYLNNSGLMWELGPKHSALLVFAEHRYYGESKPFKKRTRHSMHWLTTEQAMADYAELIWELRTELGDVDAPVVGFGGSYGGMLAAWFRMKYPHLLDGAIAGSAPIWTFLG-EDPAYDAGGFAAVVTRDASEEGGSAPACVANARAGWKLLFK-------------------LGDSEAGRHK----------------------------------------LSQALGLCSRAAPRTSADVEALAEWLQGAWDYLAMGNYPYPSGYMLNGDG-ELPAYPVRVACQHLAD 277
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: A0A8J4CH77_9CHLO (Uncharacterized protein n=5 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CH77_9CHLO) HSP 1 Score: 204 bits (518), Expect = 3.300e-57 Identity = 124/295 (42.03%), Postives = 164/295 (55.59%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLPFGAPDIGRE--FLSTSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVLAMEGLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREACSRIS 879
GNEADVTLY+ ATGL+WE+A F AL++F EHR+YG++ PFG + +LS QA+ADYA L+ LR ++ AE +P+IAFGGSYGGMLAAWLRLKYPH++ GAVAASAPV A G+ P +P F VT A + GA C++NVR AF +L+ GR G + LG RLLR+C + E A++++A+W + AFD AMGNYPYP+ YI+ LPAWP+R AC+ ++
Sbjct: 213 GNEADVTLYVNATGLIWEHAEEFGALVIFVEHRYYGKTQPFGPDSWSTDPSYLSVEQAMADYATLLWHLRSQMGAEDSPIIAFGGSYGGMLAAWLRLKYPHLIAGAVAASAPVGAFPGV--PGWEPSRFWQVVTYDATASAGAAPACASNVRAAFRHVLT------------------------LGRTVGGRKTLG-----------------------------------RLLRLCEDI--QDEAAVVDVAYWLQGAFDAFAMGNYPYPSTYIIGDPDHPLPAWPMRAACNHLA 444
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: A0A5D6XPD9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPD9_9STRA) HSP 1 Score: 201 bits (511), Expect = 4.590e-57 Identity = 124/293 (42.32%), Postives = 158/293 (53.92%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLPFGAPDIGR-EFLSTSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVLAMEGLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREACSRI 876
GNEADV LYL TGLMWENA F A LVFAEHR++G+S+PFG ++LST QALADYA LI+ L+ L ++ PV+ FGGSYGGML +W R+KYPH++ G +AASAP++A G RP D +SFA VT A PA G+ C NVRRA+ A+ S G K G L A +CA ++ + L W +SAFDY+AMGNYPYP+ YI+NG V LPA+P+R AC ++
Sbjct: 126 GNEADVELYLNNTGLMWENAQDFGATLVFAEHRYFGKSVPFGKKVTKHMQYLSTEQALADYAELITYLKESLALDV-PVVGFGGSYGGMLGSWFRMKYPHIIDGVIAASAPIVAFLGDERPV-DMDSFARVVTFDASPAAGSAPNCVPNVRRAWTAMAS------------------------LGATKAGRAQLKDA-----------------------------------FALCASEKLSSDEDVAGLIDWAKSAFDYMAMGNYPYPSPYIMNGKSV-LPAYPVRAACEQL 356
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Match: W7TPZ5_9STRA (Lysosomal pro-x n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPZ5_9STRA) HSP 1 Score: 202 bits (513), Expect = 6.250e-57 Identity = 130/298 (43.62%), Postives = 163/298 (54.70%), Query Frame = 1
Query: 1 GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLP---FGAPDIGREFLSTSQALADYARLISTLRRELEAEMAPVIAFGGSYGGMLAAWLRLKYPHVVHGAVAASAPVLAME------GLRRPTPDPESFAATVTRAAGPAGGATEKCSANVRRAFNAILSGAGAAGSRSAPEVTDVASTAADAERGRGKPGLRALGSAGEAPDAIPDVDIFEPDSADADAEEAEAAVDRVARLLRVCAGRIPKGEDALLELAWWTRSAFDYLAMGNYPYPTGYILNGGGVELPAWPLREAC 867
GNEADVTLYL A+GLMWENAP F ALLVFAEHR+YG+S P F A + ++LS+ QALADYARLI L+ EL + +PVIAFGGSYGGMLA+W RL YPH+V GA+A SAPVL E G+ ESF+ VTR A P GG+ C+ NVR A+ P + D+A++ + + R+C G + ED L L W +SA+ Y+AMGNYP+P+ Y+LNG G LPAWP+R AC
Sbjct: 159 GNEADVTLYLNASGLMWENAPEFGALLVFAEHRYYGKSQPLQPFTAHKM--DYLSSEQALADYARLIIALKTELNSPDSPVIAFGGSYGGMLASWWRLLYPHLVSGAIAGSAPVLDFEPEVGEEGI-------ESFSYIVTRDASPEGGSNAYCADNVRAAW---------------PVIKDLAASVTGRQE--------------------------------------------LTERFRICQGALATAEDVDLLLGW-LQSAWAYMAMGNYPFPSTYVLNGRGT-LPAWPVRVAC 386 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93742.16808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig93742.16808.1 >prot_H-elongata_contig93742.16808.1 ID=prot_H-elongata_contig93742.16808.1|Name=mRNA_H-elongata_contig93742.16808.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp GNEADVTLYLGATGLMWENAPAFRALLVFAEHRFYGESLPFGAPDIGREFback to top mRNA from alignment at H-elongata_contig93742:288..2387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig93742.16808.1 ID=mRNA_H-elongata_contig93742.16808.1|Name=mRNA_H-elongata_contig93742.16808.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2100bp|location=Sequence derived from alignment at H-elongata_contig93742:288..2387+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig93742:288..2387+ >mRNA_H-elongata_contig93742.16808.1 ID=mRNA_H-elongata_contig93742.16808.1|Name=mRNA_H-elongata_contig93742.16808.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig93742:288..2387+ (Himanthalia elongata Himel1 dioecious)back to top |