mRNA_H-elongata_contig93707.16805.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93707.16805.1
Unique NamemRNA_H-elongata_contig93707.16805.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: D8LHC7_ECTSI (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHC7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.010e-34
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 LPTSILATMKTPQVGTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEG 219
            L  S+L ++    VGTPFSFSFFSTLHGG SIAAHTAPCNLRLRCHLPL VPS+DP +CGMRVGGEIRPWEEG
Sbjct:   85 LTASLLDSVADHMVGTPFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSADPSQCGMRVGGEIRPWEEG 157          
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: A0A836CPE8_9STRA (Putative aspartyl/Asparaginyl beta-hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPE8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.180e-22
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 1
Query:   13 ILATMKTPQVGTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEG 219
            +L   ++   GTP S+SFFSTLH   +IA HTA CNLRLRCH PLIVPS++ ++CG+RVG E+R WEEG
Sbjct:  119 LLDATESHMTGTPMSYSFFSTLHPRSAIAPHTAACNLRLRCHFPLIVPSTNADECGIRVGDEVRAWEEG 187          
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: A0A7S2WWP7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWP7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.200e-20
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   37 QVGTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEG 219
              GTPFSFSFFSTLH   SIA H+APCNLRLR H+PL VPS D  +CG RV   + PW+EG
Sbjct:  177 MTGTPFSFSFFSTLHSHSSIAPHSAPCNLRLRLHVPLTVPSEDANECGFRVADHVAPWKEG 237          
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: A0A7S3XA75_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3XA75_9SPIT)

HSP 1 Score: 88.2 bits (217), Expect = 7.790e-20
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    4 PTSILATMKTPQV---GTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEG 219
            P +  A +  P++     PF+F+FFSTL GG  IA H +PCNLR+R HLPLIVP  DPE CGM+V GE R WEEG
Sbjct:   97 PMTASALLSVPRLCVDSMPFAFTFFSTLRGGSHIAPHCSPCNLRIRVHLPLIVP--DPEACGMKVAGETRRWEEG 169          
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: A0A7S3MFY7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFY7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.900e-19
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   16 LATMKTPQV--GTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEGTP 225
            L ++ +P +  GTPFSF+FFSTLH   +IA H  PCNLR+RCH PLIVP S   KCGM+VG +   WEEG P
Sbjct:  115 LESLDSPTLMRGTPFSFAFFSTLHPHSTIAPHYGPCNLRIRCHFPLIVPKSG--KCGMQVGDKTVTWEEGKP 184          
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: W2RER7_PHYPN (Asp_Arg_Hydrox domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RER7_PHYPN)

HSP 1 Score: 80.9 bits (198), Expect = 3.810e-17
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   37 QVGTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEG 219
              G PF++SFFS L    SI AH+APCN+RLRCH PLIVP    E CG+RVG E R WEEG
Sbjct:  130 MAGLPFAYSFFSILKPESSIKAHSAPCNIRLRCHFPLIVP----EGCGIRVGDETRQWEEG 186          
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: A0A7R9YNQ3_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YNQ3_DIALT)

HSP 1 Score: 79.0 bits (193), Expect = 3.860e-17
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   49 PFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEG 219
            PF F+FFSTLH G +I  HTAPCNLRLRCHLPL VP  D   C M + G  +PW EG
Sbjct:   33 PFGFAFFSTLHPGSTIEPHTAPCNLRLRCHLPLRVPPGD--GCAMELAGARQPWAEG 87          
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: A0A6A3EN18_9STRA (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EN18_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.340e-17
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   13 ILATMKTPQVGTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEG 219
            IL ++     G PF++SFFS L    SI AH+APCN+RLRCH PL VP    E CG+RVG E R WEEG
Sbjct:  118 ILESIPGFMAGLPFAYSFFSVLKPESSIKAHSAPCNIRLRCHFPLFVP----EGCGIRVGDETRQWEEG 182          
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: A0A6G0KLC7_9STRA (Asp_Arg_Hydrox domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6G0KLC7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.340e-17
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   13 ILATMKTPQVGTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEG 219
            IL ++     G PF++SFFS L    SI AH+APCN+RLRCH PL VP    E CG+RVG E R WEEG
Sbjct:  118 ILESIPGFMAGLPFAYSFFSVLKPESSIKAHSAPCNIRLRCHFPLFVP----EGCGIRVGDETRQWEEG 182          
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Match: A0A3R7K0G3_9STRA (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0G3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.170e-17
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   13 ILATMKTPQVGTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEKCGMRVGGEIRPWEEG 219
            IL ++     G PF+++FFS L    SI AH+APCN+RLRCH PL VP    E CG+RVG E R WEEG
Sbjct:   49 ILESIPGFMTGLPFAYAFFSVLKPESSIKAHSAPCNIRLRCHFPLFVP----EGCGIRVGDETRQWEEG 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93707.16805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHC7_ECTSI1.010e-3479.45Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
A0A836CPE8_9STRA1.180e-2260.87Putative aspartyl/Asparaginyl beta-hydroxylase n=1... [more]
A0A7S2WWP7_9STRA1.200e-2065.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XA75_9SPIT7.790e-2057.33Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S3MFY7_9STRA3.900e-1958.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W2RER7_PHYPN3.810e-1762.30Asp_Arg_Hydrox domain-containing protein n=8 Tax=P... [more]
A0A7R9YNQ3_DIALT3.860e-1763.16Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A6A3EN18_9STRA6.340e-1756.52Asp_Arg_Hydrox domain-containing protein n=2 Tax=P... [more]
A0A6G0KLC7_9STRA6.340e-1756.52Asp_Arg_Hydrox domain-containing protein n=3 Tax=P... [more]
A0A3R7K0G3_9STRA7.170e-1755.07Asp_Arg_Hydrox domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93707contigH-elongata_contig93707:2192..2416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.6e-26
Seed eggNOG ortholog2880.D8LHC7
Preferred nameASPHD2
KEGG koko:K00476
EggNOG free text desc.peptide-aspartate beta-dioxygenase activity
EggNOG OGsCOG3555@1,KOG3696@2759
EC1.14.11.16
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931333.3114588-CDS-H-elongata_contig93707:2191..23921622931333.3114588-CDS-H-elongata_contig93707:2191..2392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93707 2192..2392 -
1691679793.7900167-CDS-H-elongata_contig93707:2191..23921691679793.7900167-CDS-H-elongata_contig93707:2191..2392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93707 2192..2392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931333.3301277-UTR-H-elongata_contig93707:2392..24161622931333.3301277-UTR-H-elongata_contig93707:2392..2416Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93707 2393..2416 -
1691679793.8124537-UTR-H-elongata_contig93707:2392..24161691679793.8124537-UTR-H-elongata_contig93707:2392..2416Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93707 2393..2416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93707.16805.1prot_H-elongata_contig93707.16805.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93707 2192..2392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93707.16805.1

>prot_H-elongata_contig93707.16805.1 ID=prot_H-elongata_contig93707.16805.1|Name=mRNA_H-elongata_contig93707.16805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MKTPQVGTPFSFSFFSTLHGGGSIAAHTAPCNLRLRCHLPLIVPSSDPEK
CGMRVGGEIRPWEEGTP
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mRNA from alignment at H-elongata_contig93707:2192..2416-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93707.16805.1 ID=mRNA_H-elongata_contig93707.16805.1|Name=mRNA_H-elongata_contig93707.16805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig93707:2192..2416- (Himanthalia elongata Himel1 dioecious)
TTACCGACATCGATACTTGCGACGATGAAAACCCCGCAGGTCGGTACGCC CTTCTCGTTCTCGTTTTTCTCGACGCTGCACGGCGGGGGTTCCATAGCGG CGCACACAGCCCCGTGCAACCTGAGGCTGCGCTGCCACCTGCCCTTGATC GTTCCGTCGAGTGATCCGGAGAAATGCGGGATGCGCGTCGGTGGAGAGAT TCGACCTTGGGAGGAAGGTACACCC
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Coding sequence (CDS) from alignment at H-elongata_contig93707:2192..2416-

>mRNA_H-elongata_contig93707.16805.1 ID=mRNA_H-elongata_contig93707.16805.1|Name=mRNA_H-elongata_contig93707.16805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig93707:2192..2416- (Himanthalia elongata Himel1 dioecious)
ATGAAAACCCCGCAGGTCGGTACGCCCTTCTCGTTCTCGTTTTTCTCGAC
GCTGCACGGCGGGGGTTCCATAGCGGCGCACACAGCCCCGTGCAACCTGA
GGCTGCGCTGCCACCTGCCCTTGATCGTTCCGTCGAGTGATCCGGAGAAA
TGCGGGATGCGCGTCGGTGGAGAGATTCGACCTTGGGAGGAAGGTACACC
CATGAAAACCCCGCAGGTCGGTACGCCCTTCTCGTTCTCGTTTTTCTCGA
CGCTGCACGGCGGGGGTTCCATAGCGGCGCACACAGCCCCGTGCAACCTG
AGGCTGCGCTGCCACCTGCCCTTGATCGTTCCGTCGAGTGATCCGGAGAA
ATGCGGGATGCGCGTCGGTGGAGAGATTCGACCTTGGGAGGAAGGTACAC
CC
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