mRNA_H-elongata_contig9369.16802.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: D8LQX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX7_ECTSI) HSP 1 Score: 141 bits (355), Expect = 5.530e-36 Identity = 84/161 (52.17%), Postives = 108/161 (67.08%), Query Frame = 1
Query: 1 PLTECTLGGRCTGDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHARFET-SSAWNPAVTVTTGVAAREGDSVLVEVTSFPV--VEILVDGASY-VTGTEVNGVTIQVSDSTITMEFVSGVRVEYHTS-SSLGNVNAYVPTTLETSGLLGNNNGVWSDDW 468
P E GG GDPH + +DG YDCHGQG+FVL +AAATE++V ARF+ S NPAVTVTTG+AAREG S L++VT+ VE+LVDG Y + T V GV ++V+ S + + F SG+ V TS + + VNAY P +L T+GLLGNNNG DD+
Sbjct: 351 PTPEPKRGGSADGDPHLRVYDGTGYDCHGQGEFVLTKAAATESEVQARFQQWSQNPNPAVTVTTGIAAREGTSSLIQVTTAASGGVEVLVDGELYDASATSVIGVALEVTSSRVEISFESGLDVFVSTSINGMLRVNAYAPVSLATTGLLGNNNGELGDDF 511
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI) HSP 1 Score: 134 bits (338), Expect = 4.810e-34 Identity = 79/154 (51.30%), Postives = 106/154 (68.83%), Query Frame = 1
Query: 22 GGRCTGDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHARFET-SSAWNPAVTVTTGVAAREGDSVLVEVTSFPV--VEILVDGASY-VTGTEVNGVTIQVSDSTITMEFVSGVRVEYHTS-SSLGNVNAYVPTTLETSGLLGNNNGVWSDDW 468
GG GDPH + +DG YDCHGQG+FVL +AAATE++V ARF+ S +PAVTVTTG+AAREG S L++VT+ VE+LVDG Y + + V G+ ++V+ S + + F SG+ V TS + + VNAY P +L T+GLLGNNNG DD+
Sbjct: 3 GGSADGDPHLRVYDGTGYDCHGQGEFVLTKAAATESEVQARFQQWSQNPDPAVTVTTGIAAREGTSSLIQVTTAASGGVEVLVDGELYDASASSVIGIALEVTSSRVEISFESGLDVFVSTSINGMLRVNAYAPVSLATTGLLGNNNGELGDDF 156
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI) HSP 1 Score: 116 bits (291), Expect = 2.520e-27 Identity = 75/176 (42.61%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 1 PLTECT---------LGGRCTGDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHARFETSSAWNPAVTVTTGVAAREGDSVLVEVT-SFPVVEILVDGASYVTG------TEVNGVTIQVSDSTITMEFVSGVRVE----YHTSSSLGNVNAYVPTTLETSGLLGNNNGVWSDDW 468
P+T+ T G C GDPHC+TFDG+ YDCHG GDFVL+E+A T VHARFE +P + TTGVAA EG S ++EVT S IL+DG +Y + GV + V+D + M F SG++V + + +G V Y P + T G+LG NNG +DDW
Sbjct: 189 PVTDATPAPTPAPTMRGAYCHGDPHCQTFDGLYYDCHGDGDFVLLESADTGAVVHARFEPLV--SPDASFTTGVAATEGGSSVIEVTVSDGERTILIDGEAYAYDEGDDLPATMTGVALTVTDQNVDMLFPSGLQVNARRWFTDPNYIGGVYVYAPLDMPTVGVLGTNNGNRADDW 362
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: D7FTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI) HSP 1 Score: 113 bits (283), Expect = 1.200e-26 Identity = 71/160 (44.38%), Postives = 92/160 (57.50%), Query Frame = 1
Query: 22 GGRCTGDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHARFETSSAWNPAVTVTTGVAAREGDSVLVEVT-SFPVVEILVDGASYVTG------TEVNGVTIQVSDSTITMEFVSGVRVE----YHTSSSLGNVNAYVPTTLETSGLLGNNNGVWSDDW 468
G C GDPHC+TFDG+ YDCHG GDFVL+E+A VHARFE +P + TTGVAA E S ++EVT S IL+DG +Y G + GV + V+D + M F SG++V + + +G V Y P + T G+LG NNG DDW
Sbjct: 3 GAYCHGDPHCQTFDGLYYDCHGDGDFVLLESADAGAVVHARFEPLV--SPDASFTTGVAATEDGSSVIEVTVSGGERTILIDGEAYAYGEGDDLPATMTGVALTVTDQNVDMWFPSGLQVNARRWFTDPNYIGGVYVYAPLDMSTVGVLGTNNGNRVDDW 160
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: A0A6H5JLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL4_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.670e-26 Identity = 69/150 (46.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query: 37 GDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHARFET-SSAWNPAVTVTTGVAAREGDSVLVEVTSFPV--VEILVDGASY--VTGTEVNGVTIQVSDSTITMEFVSGVRV-EYHTSSSLGNVNAYVPTTLETSGLLGNNNGVWSDDW 468
GDPH + +D V YDCHGQG+FV+ +AAAT+++V ARF+ S P VTV T VAAREG S +++ TS +E+ VDG Y GT + GV +++ ++ + M F SG+ V + + ++AYVP L T+GLLGNNNG DDW
Sbjct: 502 GDPHVEGYDDVGYDCHGQGEFVVTKAAATDSEVQARFQQWSQNPTPGVTVATAVAAREGTSSVIQATSTASGGLEVWVDGELYDEAAGTTLTGVALELLEARVEMIFPSGMEVIVLSRTGGILRIDAYVPLDLATTGLLGNNNGNIGDDW 651
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI) HSP 1 Score: 113 bits (282), Expect = 4.170e-26 Identity = 70/159 (44.03%), Postives = 95/159 (59.75%), Query Frame = 1
Query: 22 GGRCTGDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHARFETSSAWNPAVTVTTGVAAREGDSVLVEVT-SFPVVEILVDGASYV-TGTE----VNGVTIQVSDSTITMEFVSGVRVE----YHTSSSLGNVNAYVPTTLETSGLLGNNNGVWSDDW 468
G C GDPHC+TFDG+++DCHG GDFVL+ +A T VHARFE +P + TTGVAA E S ++EVT + IL+DG Y G + + GVT+ V+D + M F SG++V + + +G V Y P + T G+LG NNG +DDW
Sbjct: 199 GAYCHGDPHCRTFDGLAFDCHGDGDFVLLNSADTGAMVHARFEPLV--SPDASFTTGVAATEDGSSVIEVTVNDGERTILIDGEPYAYEGGDFPETMTGVTLTVTDQNVDMLFPSGLQVNARRWFTDPNYIGGVYVYAPLAMSTVGVLGTNNGNMADDW 355
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: D7G5U3_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U3_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.440e-23 Identity = 68/162 (41.98%), Postives = 95/162 (58.64%), Query Frame = 1
Query: 1 PLTECTLGGRCTGDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHARFETSSAWNPA--VTVTTGVAAREGDSVLVEVT---SFPVVEILVDGASYVTGTEVN-GVTIQVSDSTITMEFVSGVRVEYHTSSSLGNVNAYVPTTLETSGLLGNNNGVWSDDW 468
P C G GDPH T DG++YDCHG+G+F L + +T+ +V RFE S +P+ TVTT + ARE S +V+VT S +EILVDG +Y GV + V+ S + M F+S + + ++++ +V VP LET+GLLGNNNG DDW
Sbjct: 10 PPVVCGFNG---GDPHLVTLDGLAYDCHGRGEFFLTKVESTQGEVQVRFEPWSQ-DPSGPFTVTTAMVAREEGSSVVQVTLAASGSALEILVDGETYDEAANPGTGVMLDVTSSQVDMLFLSCMEISVSFANAMLSVEVNVPRPLETTGLLGNNNGDPVDDW 167
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: A0A7S1V9E9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9E9_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 9.700e-8 Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 25 GRCTGDPHCKTFDGVSYDCHGQGDFVLVE--AAATETKVHARFETSSAWNPAVTVTTGVAA 201
G GDPH TFDG+ YDC G+G+FVLV+ A + ++ ARF S+ N VTVTTGV A
Sbjct: 136 GSSNGDPHMATFDGLGYDCQGEGEFVLVKDLVAGSSLEIQARFRPPSS-NSRVTVTTGVVA 195
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: A0A7M5X0M8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X0M8_9CNID) HSP 1 Score: 57.4 bits (137), Expect = 1.220e-6 Identity = 56/163 (34.36%), Postives = 79/163 (48.47%), Query Frame = 1
Query: 1 PLTECTLGGRCTGDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHAR-FETSSAWNPAVTVTTGVAAREGDSVLV----EVTSFPVVEILVDGASYVTGTEVNGVTIQVSDSTITMEFVSGVRVEYHTSSSLGNVNAYVPTT--LETSGLLGNNNGVWSDDW 468
P +C R TGDP+ TFDG + + GD+VLV + A +VHAR FE + V+ GVAAREGD V+V + T P+V+ AS V E + + T + F SG RV + + ++ +P T GL G NG +DD+
Sbjct: 409 PTRQC----RSTGDPYINTFDGTWFPHYKVGDYVLVTSKARLFEVHARAFECQRS----VSCNCGVAAREGDDVMVVDMCQNTKPPIVKF----ASTVLPQEGSIIERGPDGKTFILNFPSGARVTFVYRNPSSDIIVSLPPDDYQNTRGLCGTWNGNTNDDF 559
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Match: UPI0004D08046 (sushi domain-containing protein 2 n=1 Tax=Galeopterus variegatus TaxID=482537 RepID=UPI0004D08046) HSP 1 Score: 55.5 bits (132), Expect = 5.370e-6 Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query: 37 GDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHARFE---TSSAWNPAVTVTTGVAAREGDSVLVEV 231
GDPH TFDG ++ +G+G++VL+EAA ++ +VH R + TSS T T VA +EG+S +VEV
Sbjct: 459 GDPHFVTFDGTNFTFNGRGEYVLLEAALSDLRVHVRAQPGTTSSGTQTLGTGLTAVAVQEGNSDVVEV 526 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9369.16802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9369.16802.1 >prot_H-elongata_contig9369.16802.1 ID=prot_H-elongata_contig9369.16802.1|Name=mRNA_H-elongata_contig9369.16802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp PLTECTLGGRCTGDPHCKTFDGVSYDCHGQGDFVLVEAAATETKVHARFEback to top mRNA from alignment at H-elongata_contig9369:322..789- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9369.16802.1 ID=mRNA_H-elongata_contig9369.16802.1|Name=mRNA_H-elongata_contig9369.16802.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at H-elongata_contig9369:322..789- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9369:322..789- >mRNA_H-elongata_contig9369.16802.1 ID=mRNA_H-elongata_contig9369.16802.1|Name=mRNA_H-elongata_contig9369.16802.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig9369:322..789- (Himanthalia elongata Himel1 dioecious)back to top |