mRNA_H-elongata_contig9367.16799.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9367.16799.1
Unique NamemRNA_H-elongata_contig9367.16799.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9367.16799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9367contigH-elongata_contig9367:8316..9143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size779
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9367.16799.1prot_H-elongata_contig9367.16799.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9367 8316..8795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931332.6282196-CDS-H-elongata_contig9367:8315..87951622931332.6282196-CDS-H-elongata_contig9367:8315..8795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9367 8316..8795 -
1691679793.513911-CDS-H-elongata_contig9367:8315..87951691679793.513911-CDS-H-elongata_contig9367:8315..8795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9367 8316..8795 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931332.655582-UTR-H-elongata_contig9367:8795..88421622931332.655582-UTR-H-elongata_contig9367:8795..8842Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9367 8796..8842 -
1691679793.5239544-UTR-H-elongata_contig9367:8795..88421691679793.5239544-UTR-H-elongata_contig9367:8795..8842Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9367 8796..8842 -
1622931332.6792786-UTR-H-elongata_contig9367:8891..91431622931332.6792786-UTR-H-elongata_contig9367:8891..9143Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9367 8892..9143 -
1691679793.5339272-UTR-H-elongata_contig9367:8891..91431691679793.5339272-UTR-H-elongata_contig9367:8891..9143Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9367 8892..9143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9367.16799.1

>prot_H-elongata_contig9367.16799.1 ID=prot_H-elongata_contig9367.16799.1|Name=mRNA_H-elongata_contig9367.16799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MKKSSQSSQFSQLIMDLTYADYEYSRDEITTHSIGSELEYAAREPSISSN
SQECSSSSSSGRNTPHQSSNQFFSKDTSSITYKDTQKRKAANCLDFQTKE
STGKQWAENVGTANDARTANVWAHFTGFSPPNKQGHTVKCLHPGEERCSP
QGWIGISNN*
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mRNA from alignment at H-elongata_contig9367:8316..9143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9367.16799.1 ID=mRNA_H-elongata_contig9367.16799.1|Name=mRNA_H-elongata_contig9367.16799.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at H-elongata_contig9367:8316..9143- (Himanthalia elongata Himel1 dioecious)
ATCGTACATAATAACCAGGGCTTGTCACGGGGAAAACATATCACGGGAAA
TATTATCGGACGGGACTTTTTTCCCGTCCCGACATTTTTTTGGCGACAAG
AACTCGGTCTCGTTCCGTCCCGGCACAACGGGGGAAAATTCCCGTCCCGT
CCTCACGGGAAATTCCCGATATTTTTCACGGGAATTCTTGTTTAATCTGA
CGGAAACTTGAGAATATAGAATATCTTTCCACATGTAGGATATGGGAACA
TGGTTTTAATTTGTTGTCACCGGCCCGGCGATCTCTGCCCCAGCACCACA
GATCACTCTTACGTTTTACTTCAGTCGACATTCCAAAGTTTTGTTTCAAT
GAAGAAGTCCAGCCAGAGTTCTCAGTTTTCCCAATTGATAATGGACCTTA
CATATGCGGACTACGAGTACAGCAGGGATGAGATCACCACGCATTCTATT
GGCAGTGAGTTGGAATATGCAGCGAGAGAACCAAGTATCAGCAGCAATTC
CCAGGAGTGCTCGTCAAGCAGCAGCAGCGGCAGAAACACCCCACATCAAA
GTAGCAATCAGTTTTTTTCGAAAGATACAAGTAGCATCACGTACAAGGAC
ACACAGAAGAGGAAGGCGGCGAATTGCCTTGATTTTCAGACGAAGGAAAG
CACCGGAAAACAGTGGGCTGAAAACGTGGGTACCGCAAATGATGCACGGA
CAGCCAATGTGTGGGCGCATTTTACGGGTTTTAGCCCGCCAAACAAACAA
GGACATACCGTGAAGTGCCTTCACCCTGGTGAAGAACGTTGCTCTCCACA
AGGCTGGATAGGGATATCAAATAATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig9367:8316..9143-

>mRNA_H-elongata_contig9367.16799.1 ID=mRNA_H-elongata_contig9367.16799.1|Name=mRNA_H-elongata_contig9367.16799.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig9367:8316..9143- (Himanthalia elongata Himel1 dioecious)
ATGAAGAAGTCCAGCCAGAGTTCTCAGTTTTCCCAATTGATAATGGACCT
TACATATGCGGACTACGAGTACAGCAGGGATGAGATCACCACGCATTCTA
TTGGCAGTGAGTTGGAATATGCAGCGAGAGAACCAAGTATCAGCAGCAAT
TCCCAGGAGTGCTCGTCAAGCAGCAGCAGCGGCAGAAACACCCCACATCA
AAGTAGCAATCAGTTTTTTTCGAAAGATACAAGTAGCATCACGTACAAGG
ACACACAGAAGAGGAAGGCGGCGAATTGCCTTGATTTTCAGACGAAGGAA
AGCACCGGAAAACAGTGGGCTGAAAACGTGGGTACCGCAAATGATGCACG
GACAGCCAATGTGTGGGCGCATTTTACGGGTTTTAGCCCGCCAAACAAAC
AAGGACATACCGTGAAGTGCCTTCACCCTGGTGAAGAACGTTGCTCTCCA
CAAGGCTGGATAGGGATATCAAATAATTAAATGAAGAAGTCCAGCCAGAG
TTCTCAGTTTTCCCAATTGATAATGGACCTTACATATGCGGACTACGAGT
ACAGCAGGGATGAGATCACCACGCATTCTATTGGCAGTGAGTTGGAATAT
GCAGCGAGAGAACCAAGTATCAGCAGCAATTCCCAGGAGTGCTCGTCAAG
CAGCAGCAGCGGCAGAAACACCCCACATCAAAGTAGCAATCAGTTTTTTT
CGAAAGATACAAGTAGCATCACGTACAAGGACACACAGAAGAGGAAGGCG
GCGAATTGCCTTGATTTTCAGACGAAGGAAAGCACCGGAAAACAGTGGGC
TGAAAACGTGGGTACCGCAAATGATGCACGGACAGCCAATGTGTGGGCGC
ATTTTACGGGTTTTAGCCCGCCAAACAAACAAGGACATACCGTGAAGTGC
CTTCACCCTGGTGAAGAACGTTGCTCTCCACAAGGCTGGATAGGGATATC
AAATAATTAA
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