mRNA_H-elongata_contig93666.16798.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93666.16798.1
Unique NamemRNA_H-elongata_contig93666.16798.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: D8LE65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE65_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.340e-58
Identity = 109/136 (80.15%), Postives = 122/136 (89.71%), Query Frame = 1
Query:    1 EKVFEDLPEGFHNDVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWGHIRLAPRGXXXXXXXXXXXXXXXXXXXXXXXXXDDIGRSTSGMPHDALYVQVM 408
            E VFEDLPEGFH+D+DSIT+A GGHHTCALEYRPGVDFGGPVRCWGR+DWGQS+P  DIFVQVSAG+RHTCGIKIDQTV+CWGH+  +PRG   XXXXXXXXXXXXXXXXXXXXXXDDI  STSG+P +  +VQV+
Sbjct:   50 EVVFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWGHMPFSPRGFFQXXXXXXXXXXXXXXXXXXXXXXDDIAGSTSGVPANTTFVQVV 185          
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: A0A7S1UCR5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCR5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.640e-27
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   10 FEDLPEGFHNDVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWGHI 255
            F +LPEGFH D+D ++++ G +H CA+EY      GGP+RCWG N  GQS PPG  F+QVSAG  HTC + +DQT+ CWG +
Sbjct:   27 FTELPEGFHADLDEVSVSVGEYHACAIEYDETQPMGGPLRCWGGNTEGQSDPPGGTFMQVSAGAMHTCALSVDQTIECWGRV 108          
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: A0A7S2SKA4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.440e-27
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   10 FEDLPEGFHNDVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWG 249
            F+ L EGF+ D+D    +AG  HTCALE RP V+FGG VRCWG N+ GQ+ PP  +F+QVS+G   TCGI++D+TVACWG
Sbjct:   34 FDRLEEGFYADLDGTAASAGFFHTCALEMRPSVEFGGVVRCWGFNEHGQASPPPGVFIQVSSGHLFTCGIRMDETVACWG 113          
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: A0A067D4P3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D4P3_SAPPC)

HSP 1 Score: 95.5 bits (236), Expect = 4.430e-21
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   34 HNDVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWG 249
            H D+D  T++AG  HTCA+      DFGG V CWG +  GQ+ PP   F+QVS+G  HTCG+K+D+TVACWG
Sbjct:   27 HVDIDDTTVSAGISHTCAIHSVSAADFGGKVLCWGDDSMGQASPPDAEFIQVSSGRFHTCGVKLDETVACWG 98          
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: A0A1V9YN74_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN74_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.810e-19
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   34 HNDVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWG 249
            H D+D  T++AG  HTCA+      DFGG V CWG +  GQS PP   F+QVS G  H+CG+K+D+TV CWG
Sbjct:   53 HLDIDDTTVSAGIGHTCAIHSVSAADFGGKVLCWGEDMLGQSSPPDAEFIQVSCGRFHSCGVKLDETVECWG 124          
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: A0A225VBP5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBP5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.360e-19
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   40 DVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWG 249
            D+D  +IAAG  H+CA+  +   D GG V CWG N+ GQS PP   F+QVS G  H+CGI+ID+T+ CWG
Sbjct:   31 DIDETSIAAGIEHSCAIHTQSYEDVGGRVVCWGVNNGGQSTPPPGDFIQVSTGRLHSCGIRIDETLECWG 100          
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: A0A1W0A4G8_9STRA (Uncharacterized protein n=2 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4G8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 9.450e-19
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   13 EDLPEGFHNDVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWG 249
            ED+ E  H D+D  T++AG  H+CA+      DFGG V CWG N  GQ+  P   F+QVS+G  H+CG+K+D+T+ CWG
Sbjct:   23 EDVIE--HVDIDDTTVSAGIEHSCAIHSVSAADFGGKVICWGSNSMGQAEAPDAEFIQVSSGRFHSCGVKLDETIECWG 99          
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: H3GQG3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQG3_PHYRM)

HSP 1 Score: 87.4 bits (215), Expect = 1.700e-18
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   40 DVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWG 249
            D+D  +IAAG  H+CA++ +   D GG V CWG N+ GQS PP   F+QVS G  H+CGI+ID+T+ CWG
Sbjct:   35 DIDETSIAAGIEHSCAIQTQSYEDVGGRVVCWGVNNGGQSSPPPGDFIQVSTGRLHSCGIRIDETLECWG 104          
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: A0A3R7FVX9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FVX9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.990e-18
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   40 DVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWG 249
            D+D  TIAAG  H+CA++ +   D GG V CWG N  GQS PP   F+QVS G  H+CGI++D+T+ CWG
Sbjct:   35 DIDETTIAAGIEHSCAIQTQSYEDVGGRVVCWGVNHGGQSSPPPGEFIQVSTGRLHSCGIRVDETIECWG 104          
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Match: A0A0P1B0Z2_PLAHL (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0Z2_PLAHL)

HSP 1 Score: 87.8 bits (216), Expect = 3.870e-18
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   40 DVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWG 249
            D+D  +IAAG  H+CA+  +   D GG V CWG N+ GQS PP   F+QVS+G  H+CGI+ID+TV CWG
Sbjct:   35 DIDETSIAAGIEHSCAIYTQSYDDVGGRVVCWGVNNGGQSSPPAGKFIQVSSGRLHSCGIRIDETVECWG 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93666.16798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE65_ECTSI1.340e-5880.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UCR5_9STRA1.640e-2753.66Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SKA4_9STRA4.440e-2758.75Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A067D4P3_SAPPC4.430e-2154.17Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YN74_9STRA1.810e-1952.78Uncharacterized protein n=2 Tax=Achlya hypogyna Ta... [more]
A0A225VBP5_9STRA7.360e-1952.86Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A1W0A4G8_9STRA9.450e-1948.10Uncharacterized protein n=2 Tax=Thraustotheca clav... [more]
H3GQG3_PHYRM1.700e-1852.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3R7FVX9_9STRA1.990e-1852.86Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A0P1B0Z2_PLAHL3.870e-1854.29Regulator of chromosome condensation 1/beta-lactam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93666contigH-elongata_contig93666:1677..2468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue2.4e-47
Seed eggNOG ortholog2880.D8LE65
EggNOG free text desc.flower morphogenesis
EggNOG OGs2QUN0@2759,COG0515@1
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-00_001110.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931332.5486734-CDS-H-elongata_contig93666:1676..18621622931332.5486734-CDS-H-elongata_contig93666:1676..1862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93666 1677..1862 +
1691679793.486486-CDS-H-elongata_contig93666:1676..18621691679793.486486-CDS-H-elongata_contig93666:1676..1862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93666 1677..1862 +
1622931332.5692236-CDS-H-elongata_contig93666:2246..24681622931332.5692236-CDS-H-elongata_contig93666:2246..2468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93666 2247..2468 +
1691679793.5018952-CDS-H-elongata_contig93666:2246..24681691679793.5018952-CDS-H-elongata_contig93666:2246..2468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93666 2247..2468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93666.16798.1prot_H-elongata_contig93666.16798.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93666 1677..2468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93666.16798.1

>prot_H-elongata_contig93666.16798.1 ID=prot_H-elongata_contig93666.16798.1|Name=mRNA_H-elongata_contig93666.16798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
EKVFEDLPEGFHNDVDSITIAAGGHHTCALEYRPGVDFGGPVRCWGRNDW
GQSLPPGDIFVQVSAGDRHTCGIKIDQTVACWGHIRLAPRGFFQQLSVGG
HHTCGLRREGQVVCWGDDIGRSTSGMPHDALYVQVM
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mRNA from alignment at H-elongata_contig93666:1677..2468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93666.16798.1 ID=mRNA_H-elongata_contig93666.16798.1|Name=mRNA_H-elongata_contig93666.16798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at H-elongata_contig93666:1677..2468+ (Himanthalia elongata Himel1 dioecious)
GAGAAAGTGTTTGAAGATCTCCCGGAGGGCTTCCATAACGACGTTGATTC CATCACCATCGCGGCCGGTGGGCACCACACTTGTGCCCTGGAATATCGAC CAGGGGTTGATTTCGGCGGACCCGTGCGATGCTGGGGGAGGAATGATTGG GGTCAATCTTTACCACCTGGAGATATCTTCGTTCAGGTGTGGTACATGCA CGGAGGCGGGGATCTCCGCACATGATGATGGGGGGGTTGCATCTAAAGTA CTTCGCTGTGGGACGCTCTGCTCCAACTACCCAATGATTGTACAAAATAT ACCAGAATAATCGAAGGGCATCAACGCCAGGGTATTCTGCCCCAAATGTC CAATGGCGATACAAAGTGCGTCAGAATAATTGATCACCGTAAGCATCGAA GCCGTACGGTTATGTATGAGCAATTTCAGTACTTTTAATTTAGAATGCCG AGTTCCATCTACCCTATTAGAGAAAAACTCGTAGGGAGGGCCCCATTCCC TCGACCTTTCAGGATTTTTTTTTGTTTAAAAGGCTGTCAGTCTGTCTTGA TTAACTTAACCCTGAAACAGGTGAGCGCCGGGGATCGTCACACTTGTGGG ATAAAGATCGACCAGACGGTAGCGTGCTGGGGGCATATACGACTCGCTCC ACGGGGATTCTTCCAACAGCTCAGCGTAGGTGGACACCACACATGTGGTC TCCGAAGAGAAGGCCAGGTTGTTTGCTGGGGGGATGACATCGGCAGGAGC ACTTCTGGGATGCCACACGACGCATTATATGTTCAGGTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig93666:1677..2468+

>mRNA_H-elongata_contig93666.16798.1 ID=mRNA_H-elongata_contig93666.16798.1|Name=mRNA_H-elongata_contig93666.16798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig93666:1677..2468+ (Himanthalia elongata Himel1 dioecious)
GAGAAAGTGTTTGAAGATCTCCCGGAGGGCTTCCATAACGACGTTGATTC
CATCACCATCGCGGCCGGTGGGCACCACACTTGTGCCCTGGAATATCGAC
CAGGGGTTGATTTCGGCGGACCCGTGCGATGCTGGGGGAGGAATGATTGG
GGTCAATCTTTACCACCTGGAGATATCTTCGTTCAGGAGAAAGTGTTTGA
AGATCTCCCGGAGGGCTTCCATAACGACGTTGATTCCATCACCATCGCGG
CCGGTGGGCACCACACTTGTGCCCTGGAATATCGACCAGGGGTTGATTTC
GGCGGACCCGTGCGATGCTGGGGGAGGAATGATTGGGGTCAATCTTTACC
ACCTGGAGATATCTTCGTTCAGGTGAGCGCCGGGGATCGTCACACTTGTG
GGATAAAGATCGACCAGACGGTAGCGTGCTGGGGGCATATACGACTCGCT
CCACGGGGATTCTTCCAACAGCTCAGCGTAGGTGGACACCACACATGTGG
TCTCCGAAGAGAAGGCCAGGTTGTTTGCTGGGGGGATGACATCGGCAGGA
GCACTTCTGGGATGCCACACGACGCATTATATGTTCAGGTGATGGTGAGC
GCCGGGGATCGTCACACTTGTGGGATAAAGATCGACCAGACGGTAGCGTG
CTGGGGGCATATACGACTCGCTCCACGGGGATTCTTCCAACAGCTCAGCG
TAGGTGGACACCACACATGTGGTCTCCGAAGAGAAGGCCAGGTTGTTTGC
TGGGGGGATGACATCGGCAGGAGCACTTCTGGGATGCCACACGACGCATT
ATATGTTCAGGTGATG
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