mRNA_H-elongata_contig93643.16796.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93643.16796.1
Unique NamemRNA_H-elongata_contig93643.16796.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93643.16796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93643contigH-elongata_contig93643:155..1291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1137
Cds size594
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931332.2955148-CDS-H-elongata_contig93643:154..7481622931332.2955148-CDS-H-elongata_contig93643:154..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93643 155..748 +
1691679793.406355-CDS-H-elongata_contig93643:154..7481691679793.406355-CDS-H-elongata_contig93643:154..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93643 155..748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931332.3163595-UTR-H-elongata_contig93643:748..12911622931332.3163595-UTR-H-elongata_contig93643:748..1291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93643 749..1291 +
1691679793.4159782-UTR-H-elongata_contig93643:748..12911691679793.4159782-UTR-H-elongata_contig93643:748..1291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93643 749..1291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93643.16796.1prot_H-elongata_contig93643.16796.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93643 155..748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93643.16796.1

>prot_H-elongata_contig93643.16796.1 ID=prot_H-elongata_contig93643.16796.1|Name=mRNA_H-elongata_contig93643.16796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
IIASPWRSFPPSSYTLHKARSFGPRSQETSSHHISWASSFVSSPLAPVRS
PRSHSYRRLDSAERFQTLETTDLRTDTCKLFFGNKNPQACIALPSHHIPQ
VYHQFHGENYGRDLPRFPPFPVLRLPFMVMSTKILAHQGYNSMESFAPAN
ANILEQVASRRRHITITKAKPPRQSFCPYPHPRTSISVASRKKKTWG*
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mRNA from alignment at H-elongata_contig93643:155..1291+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93643.16796.1 ID=mRNA_H-elongata_contig93643.16796.1|Name=mRNA_H-elongata_contig93643.16796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1137bp|location=Sequence derived from alignment at H-elongata_contig93643:155..1291+ (Himanthalia elongata Himel1 dioecious)
ATAATCGCCTCGCCTTGGAGGTCATTTCCCCCCTCTTCCTACACACTCCA
CAAAGCGAGATCTTTCGGACCTCGATCCCAAGAAACCTCCAGTCATCATA
TCAGTTGGGCGTCTTCTTTTGTATCCTCGCCTCTGGCGCCCGTCCGTTCT
CCTCGCAGTCACAGTTACAGAAGGCTGGATTCCGCTGAACGTTTTCAAAC
CCTGGAAACCACGGACTTACGAACAGATACTTGCAAATTGTTTTTTGGCA
ACAAAAATCCACAAGCGTGTATTGCCCTCCCCTCCCACCACATCCCCCAA
GTCTACCATCAATTTCACGGCGAAAATTATGGACGCGACTTGCCGCGGTT
CCCACCATTTCCTGTTTTGCGTTTGCCCTTCATGGTCATGTCGACCAAAA
TTCTTGCCCACCAGGGGTATAACTCGATGGAATCATTCGCCCCCGCCAAC
GCCAATATCTTGGAGCAAGTCGCCTCAAGAAGGCGACATATTACCATCAC
CAAGGCAAAACCACCACGACAATCCTTTTGTCCATACCCACACCCACGGA
CAAGCATCTCCGTCGCCTCAAGAAAGAAAAAGACATGGGGTTGAGTGCGC
GTAAGCTGGTAAGCGACGGAGATCACCCGGAGACGGACGGCGGCGCTGCG
CTTGCAATAACAGCTTGGCCCGCGCGATGAAAGCTGCGCAGGCCATTGTC
TGCTTTTTGTTCAGCCACAGAGGTATATTCGACCGTCGGCAGGCACGCGT
GGCCCACGCTCGGCACTCACTGAATTCCAGCGCAAACTAAAACGTCTAGA
TATCGTACTGCGGTGGTGGTCGCGGCACGTCCGTCGTCCAGCGCGAGCGA
GCGACCAGCCTACACGCGGTCTATCACAGGGCGTGCGCGTCGAGATCTAG
CAACCTCAGATGCTCGGCCATCTCCTCCGCTCCCTCTTGCGAGGCGCGCT
CCTCCAACCTCCTGAACGGGGACACTTCCACCTGGCGAACACGTGCCCCC
CAAGAAGGAACAAAGGCGGCATCCGGTGACGAAGTGACGAACCGCCGAAC
GGAAGAGCGCCGAGGGAAGAATATACAAAAACAAACACAACAAACAAAAC
AAACAAAACACGCAGCATGGCGTGTGATAAGGCTGTA
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Coding sequence (CDS) from alignment at H-elongata_contig93643:155..1291+

>mRNA_H-elongata_contig93643.16796.1 ID=mRNA_H-elongata_contig93643.16796.1|Name=mRNA_H-elongata_contig93643.16796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig93643:155..1291+ (Himanthalia elongata Himel1 dioecious)
ATAATCGCCTCGCCTTGGAGGTCATTTCCCCCCTCTTCCTACACACTCCA
CAAAGCGAGATCTTTCGGACCTCGATCCCAAGAAACCTCCAGTCATCATA
TCAGTTGGGCGTCTTCTTTTGTATCCTCGCCTCTGGCGCCCGTCCGTTCT
CCTCGCAGTCACAGTTACAGAAGGCTGGATTCCGCTGAACGTTTTCAAAC
CCTGGAAACCACGGACTTACGAACAGATACTTGCAAATTGTTTTTTGGCA
ACAAAAATCCACAAGCGTGTATTGCCCTCCCCTCCCACCACATCCCCCAA
GTCTACCATCAATTTCACGGCGAAAATTATGGACGCGACTTGCCGCGGTT
CCCACCATTTCCTGTTTTGCGTTTGCCCTTCATGGTCATGTCGACCAAAA
TTCTTGCCCACCAGGGGTATAACTCGATGGAATCATTCGCCCCCGCCAAC
GCCAATATCTTGGAGCAAGTCGCCTCAAGAAGGCGACATATTACCATCAC
CAAGGCAAAACCACCACGACAATCCTTTTGTCCATACCCACACCCACGGA
CAAGCATCTCCGTCGCCTCAAGAAAGAAAAAGACATGGGGTTGAATAATC
GCCTCGCCTTGGAGGTCATTTCCCCCCTCTTCCTACACACTCCACAAAGC
GAGATCTTTCGGACCTCGATCCCAAGAAACCTCCAGTCATCATATCAGTT
GGGCGTCTTCTTTTGTATCCTCGCCTCTGGCGCCCGTCCGTTCTCCTCGC
AGTCACAGTTACAGAAGGCTGGATTCCGCTGAACGTTTTCAAACCCTGGA
AACCACGGACTTACGAACAGATACTTGCAAATTGTTTTTTGGCAACAAAA
ATCCACAAGCGTGTATTGCCCTCCCCTCCCACCACATCCCCCAAGTCTAC
CATCAATTTCACGGCGAAAATTATGGACGCGACTTGCCGCGGTTCCCACC
ATTTCCTGTTTTGCGTTTGCCCTTCATGGTCATGTCGACCAAAATTCTTG
CCCACCAGGGGTATAACTCGATGGAATCATTCGCCCCCGCCAACGCCAAT
ATCTTGGAGCAAGTCGCCTCAAGAAGGCGACATATTACCATCACCAAGGC
AAAACCACCACGACAATCCTTTTGTCCATACCCACACCCACGGACAAGCA
TCTCCGTCGCCTCAAGAAAGAAAAAGACATGGGGTTGA
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