mRNA_H-elongata_contig936.16793.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig936.16793.1
Unique NamemRNA_H-elongata_contig936.16793.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig936.16793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig936contigH-elongata_contig936:12417..17408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_005500.1
Exons8
Model size1444
Cds size1047
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931331.8792975-UTR-H-elongata_contig936:12416..124971622931331.8792975-UTR-H-elongata_contig936:12416..12497Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig936 12417..12497 +
1691679793.2817879-UTR-H-elongata_contig936:12416..124971691679793.2817879-UTR-H-elongata_contig936:12416..12497Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig936 12417..12497 +
1622931331.8989124-UTR-H-elongata_contig936:12853..129921622931331.8989124-UTR-H-elongata_contig936:12853..12992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig936 12854..12992 +
1691679793.2898831-UTR-H-elongata_contig936:12853..129921691679793.2898831-UTR-H-elongata_contig936:12853..12992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig936 12854..12992 +
1622931331.934873-UTR-H-elongata_contig936:13540..137161622931331.934873-UTR-H-elongata_contig936:13540..13716Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig936 13541..13716 +
1691679793.2987545-UTR-H-elongata_contig936:13540..137161691679793.2987545-UTR-H-elongata_contig936:13540..13716Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig936 13541..13716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931331.9535298-CDS-H-elongata_contig936:13716..138421622931331.9535298-CDS-H-elongata_contig936:13716..13842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 13717..13842 +
1691679793.3077269-CDS-H-elongata_contig936:13716..138421691679793.3077269-CDS-H-elongata_contig936:13716..13842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 13717..13842 +
1622931331.9721322-CDS-H-elongata_contig936:14088..142321622931331.9721322-CDS-H-elongata_contig936:14088..14232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 14089..14232 +
1691679793.3170972-CDS-H-elongata_contig936:14088..142321691679793.3170972-CDS-H-elongata_contig936:14088..14232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 14089..14232 +
1622931331.9934618-CDS-H-elongata_contig936:14807..152391622931331.9934618-CDS-H-elongata_contig936:14807..15239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 14808..15239 +
1691679793.326689-CDS-H-elongata_contig936:14807..152391691679793.326689-CDS-H-elongata_contig936:14807..15239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 14808..15239 +
1622931332.0228512-CDS-H-elongata_contig936:16008..160951622931332.0228512-CDS-H-elongata_contig936:16008..16095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 16009..16095 +
1691679793.3384805-CDS-H-elongata_contig936:16008..160951691679793.3384805-CDS-H-elongata_contig936:16008..16095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 16009..16095 +
1622931332.052736-CDS-H-elongata_contig936:16799..169241622931332.052736-CDS-H-elongata_contig936:16799..16924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 16800..16924 +
1691679793.3461497-CDS-H-elongata_contig936:16799..169241691679793.3461497-CDS-H-elongata_contig936:16799..16924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 16800..16924 +
1622931332.0797462-CDS-H-elongata_contig936:17275..174081622931332.0797462-CDS-H-elongata_contig936:17275..17408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 17276..17408 +
1691679793.3538349-CDS-H-elongata_contig936:17275..174081691679793.3538349-CDS-H-elongata_contig936:17275..17408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 17276..17408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig936.16793.1prot_H-elongata_contig936.16793.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig936 13717..17408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig936.16793.1

>prot_H-elongata_contig936.16793.1 ID=prot_H-elongata_contig936.16793.1|Name=mRNA_H-elongata_contig936.16793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=349bp
MDKFVGLIPVPESSNVTSIAGVEGISEVIAGGRRREEKSFFKRLREEPRE
REFVEEVERQSRKDDEELKQTERVVKGLRGKDWVLDADGKILPLNILVAL
DKKPLRVVLPFGVRDSSLTGGKSRRGGNTSERTRAVAAEPRVPMRKTAKG
TPTIKPRHDTEAAAAQGGDVQCVGEANGDNDCNDTHDKGRGGGTRSGGLR
RDSKTKRGKRSGKPPESTGRRLSERFFEIFPDFQPPMLDAADLRAGVCVL
EDGEERHGPPFEQRVPHRRVLTSLLPENVGSRDAGAVSALAEDGPLSAST
LRRFSGPRGGPSPPPPPNSSSPLRSILSCTGKERRLEGEEDDAAFLSAG
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mRNA from alignment at H-elongata_contig936:12417..17408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig936.16793.1 ID=mRNA_H-elongata_contig936.16793.1|Name=mRNA_H-elongata_contig936.16793.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4992bp|location=Sequence derived from alignment at H-elongata_contig936:12417..17408+ (Himanthalia elongata Himel1 dioecious)
TGCAGGAGAGTCGCTGCTCGATTGCTTGGGAACGCAAAGTGAACAACGCT
GGGGAGAAGCAACGGTGATCGAATTCATCCGGTAGGCGATGTGGCGTAAG
AAGGAGTGATGCAACATACCGTAGTCTGTGATCCTGATGTCCTCACAATA
TACATGATGTGCAAAACACCTCCTAAAGCGTCGAGAGCTTTTCATGGCCC
GTTGCCACGCCAGAGAGATCTCAAAGTCAAAAAATCATCCTGAAACATCG
ATAAAGGGCTATGGTAAGCTTAATGAAAGAACGAATCGTTGTGGTTACGT
TACACGTATATGACGAACGTCAGATGCGCCGAGTCGAAGCCAACGCTCTA
TATTAAGACTACTAGTTGAGCATTTGCCCCAGTTTCTGCCGACTGTCACC
AACAACATAATGATGCATTCGCGATGACTTCGTGCAGAGTCGTCTTGGAC
AAAGCTGAAAAAGCAGTGCGTAACTCTGCTCTCACTGAGTTAGAAGTGCC
TGTAGGAGCAGCTGCTGTTGTCGCGAAGGTTGCGTCTCTGCTCGAGTGGA
GCAGGTTGAGCAGTGATGACTCATTGGAAGACCAGGTGCCCGAAAGAAGA
GCAAATCAAATGCCCACTCCATATTTTCAGTGTCCTAGGTAGCCCAGTCT
TGTCTATTTCCATGGTGTACGTGATAAAGCAATGTAAATAAGCGAGACGT
GCGATACGTCATCGCCGCTCAGTTATATATCAGAGAGATATATGCGAATT
GTCTAGACCATGCAGAGACGAAACAACGCCATCAGTCGTCGGGCGATTAA
CCTTCCACATATGCTCAACAAGAAACCACAAGAGAATGTATGCGAAAAGC
TACCAATTGGCAGCAAAAGGAAAACGGAAGGGAACTCGGCAGTACTAACC
GATCCACCACCAAGACGACGTATCCCTGCGCTGTAAGGACACCTTGAATA
TTCGTAGATCATAGAGTATTTTTTATACCTTGCACCCTCGCCACCGTGTA
CTCATCTGCCCACCTTCTGTCCAGGAGGCCGAGCCAGGTAGATGCGGCGA
ACCCGATCCCGAACCTCTTCCGCCCATGATCGACGATTGGGCGAGGGGCG
TGGTCCCTCTGGAGCCCCTTACCCTCTCGTCACTCTCGTCAGACATACCA
CCATCGGCATCAACGGGGCGTCAAGATAAAACTGGAAGTCCACGTTCGAC
CCCTCTAAATTCGAAGAAGTTACGTGGAAGCGTCGACGACAAAGGCATCG
TGACGTATATCGAAGCTGGCGGAGGTGTTGGGGACGCAGGCGGTGGGGAT
ATGGACAAATTTGTTGGCCTTATCCCGGTACCGGAGAGCTCCAACGTGAC
TTCGATCGCAGGTGTTGAAGGGATTTCGGAGGTGATTGCGGGTGGGAGAC
GGCGGGAGGAGAAGTCCTTCTTCAAGGTAACGACGGTCAGCGCCCTTCAC
CTCTGGGCTCCGTGTCCACTCCCTACATCAAAACACTCCCTGGCGAGACA
AGCTCGCGCAAAGAGTGCAAACATGTAGTTAGTAGTGTTTAGTTAGTATA
TATTTTGACCTTGTCGGATTCGACGCCCTTGCGCCCGACTCAGGGTCAAC
CAAAGAGAGCTTCGACTCGCGTGTCTGCCTCTCTTTCTATTTACTTTCAC
GCACCGGCGCGCGCGTTCGAAGAGGTTGCGAGAGGAACCTAGGGAAAGAG
AATTTGTTGAGGAGGTGGAAAGGCAATCTCGAAAGGACGACGAGGAGCTG
AAGCAAACCGAGCGCGTCGTGAAGGGGCTGAGGGGAAAGGACTGGGTTTT
GGACGCCGATGGCAAGGTGGGCCACCTCACCAACGCTTTACCGTTTTTCC
AAAATTTGGCTTGAGTGCGCCAAAATGATGGTACCCACGCAGCATCGGGA
GCGCATGAAAAGTTATAGTAAAATAATTCGTCCGTTTTCGTTCGTATGTT
GTTGTATTTGGCTCAAGATTTTTACTGGCAGCGTATTTAGCCCCGCGTGC
GTCATCACACCCCTACTGCCACCAAAACGTATCTCACGAGTCGAGAGCAT
CATAGTCGCTTTTTCCTCGTGCTCCTGGGCTGATCTATGATCACCCGATG
TGTCTATTTTATGATAGAGGAAATAAAAATTTCGTCTTGGTTCCTCCTAC
GCCCAGCCCCTCCACCCCCCTCAGCAAAACAACTCTCTCTGTGTGGAACT
CTATCAATAACTACTGGGAGAGGCGTAAACGACCCGCACTCAGTAGCCTA
TCACAGAAATACGGGAAAGCCGCGACTTCCGACACCTTTTCCACCGTCGC
TGCTGCCCCCGTAAAGGTCGCCTACGTCTAATCTCCGCGTATGCGCACTC
CTAATCCCTCCGTTCTTGCAAAACCATTCGCCGACAAACAGATTCTTCCT
TTGAACATATTAGTTGCACTCGACAAAAAACCTCTGCGAGTAGTGCTGCC
GTTCGGAGTCCGGGACTCGTCGTTGACCGGCGGTAAATCAAGGCGTGGCG
GAAACACCAGCGAAAGGACGAGGGCTGTTGCGGCGGAACCCCGTGTGCCA
ATGCGAAAGACGGCCAAGGGCACCCCGACGATAAAGCCTCGACACGACAC
GGAAGCCGCTGCTGCGCAAGGAGGAGATGTACAGTGTGTTGGAGAAGCCA
ACGGCGACAACGATTGTAACGACACGCATGATAAGGGTAGAGGAGGGGGA
ACAAGGAGTGGCGGCTTACGGAGGGACTCGAAAACAAAGCGAGGGAAAAG
ATCGGGAAAACCCCCCGAAAGTACAGGAAGGCGTTTGTCAGAGAGGTTTT
TCGAGATCTTCCCGGATTTCCAGGTCTTGGGGTTGGTCCGGTTTTTCGGT
TGAGAACGGCGATTCATTTGAAACAAATCCGTAAATATCACGATTGTTTG
TGTGTTTATTTCCACTGAACGACGACCCGCCTTACTCGTCACCCAGATAC
TACATAGAGAAAGGAGAATTAAATTACCAGTGTCATCGATATATGAGCAG
AGTTGATGCACCAGGGAAGAAGGAATTGATTTATTTATCATCGGTCGCGA
AAGGCGAGGCCTATGCCTCTTTGCGCGACCCACAGCGTCGTACGCGTCCA
AACCTTATGTTGAGGGCGGGGCCCTTGCAGTGCTAAGACGGGCTCCCGTA
TTACCGTGTGTACCGTGTCCACAACGATAATAATGCTCATTTGCGTGCAC
CGTAGATCATGCGACAAAACGATTGCTATATTTGGATGGGGAGAGGTCTG
TGTAACCCCTCCTTCGTCATCCCCACGGTATCAGTACAACGCCCCACCTG
TATCACTCAAATGAGTTAACATATATATATATATATATATATATATACAT
TCACTTATTGAACGCCTTAGGGGTTTCCCCTCCCCGATCTTTTTCATGGA
GCAAGATCGGAGTGTTTCTGTTAATCCAAGCGCAAGGTTGGCTTTTGGGT
GCATCCATTTTTGTACCAGAACACTCCGGCACAGTTGTGCGCCAACCAAG
CTCCGACAATCACTTCAACTGCCGTCATCCGACCCTCCTCCGGATACCGT
CTTCATTATTTCTTCGTTTCATATCAACGATGGGAATTCAAGCCGCCTAT
GCTCGATGCGGCAGATCTTCGGGCCGGTGTTTGTGTTCTGGAAGATGGTG
AAGAGAGGCATGGACCGCCTTTCGAACAGGCGAGGGGCACGTCGAGCAGA
CATTTTATGTACGGGCATCGTGACGACTTTGCCGTATTCTGCTCTTCAAT
AAACGCGTACTACCCCTTTCCCCTCCATTCAATATATGCATATATATATA
TATATATATATATGTAACTGATTTATTGTTTAACTTTAGGAAGATAAAAT
TCCGTTCACCGGTGTGATGATGCTGTATTATAGGTGCGTACAGGACATTT
TATTCTTGTTCAAATACTTCTATTATATCTAACATTTTTTATTTAAAAGA
TTTTAGGCTCATTCTAACTCTCCATTTTTCTCTCAAGTTGTGATGATAGA
ATAATGCACCTATATATATATATATATATATAATGTTTCAACTTCAAGAG
GGATATTAAAAAATCTTAATCGATTCTTCGGCTTTCAGCTGCTCGGTTTT
CACCGTCTCGTTTCTTTTCACCGTTTCATTATATTTTCGTTTCACCGTAT
CGTTTCGTTGTCATGTCATATCGTATCGTGTACGTTTCGTGTCGTGTTGT
GAAGTAGGTGGTTTGTTTAGCTCTTGTAGCCTGCTGCTTTGTTTCGCCCG
TCCTATAACGTTTCCAAACCAAAACCTCGCTCCGTCTGTGTCCTTTTGTG
TGCGCGTGTCTTCCTATACCGTGCGTTGTGGGTGGCATTGGTCAACGGCC
CTGGTCGTCCTTCTCCGGCACTGGAGTCAACAGCGCGTTCCACATCGGAG
GGTCCTTACCAGCCTGTTACCTGAAAACGTGGGCTCACGAGACGCCGGAG
CGGTTTCGGCGCTAGCGGAGGATGGTCCCCTCTCCGCCAGCACGCTACGG
CGATTCTCGTGAGAAAACACGTGTGCTGGAATCAAGCGGTAGACTATATG
CAGACCAAACACACCGAACCTGTATTATACTTGTCTTCTGACAGATAGCT
CTCGTCCACAGATAGCTCTCGTCGAGCAGCTTGTGCAGCACAGTTGTTTA
CCTTTTCGTAATTACATTTTGTTTTGTTTATTTCCTGTGTATTCGTTTGG
TTAGTTGTTGTTCATCATTACCGTTTCACGGCGCCCTCAGTAACCGAAAA
TCCACTCCTTGCTCCCCCTTGTCCCTTCTTCCCTCCCACCCCCCACATCA
TCCCCATACTCTCCCTGTAATAATGTGCATGCACTTGGAAATCCTCGTGG
CCTCGGCAGCGGCCCGCGGGGTGGTCCCAGCCCCCCTCCTCCGCCGAACT
CGAGCTCCCCTCTCCGATCGATCCTATCCTGTACGGGAAAAGAAAGAAGA
CTCGAAGGCGAAGAAGACGATGCCGCTTTCTTGTCGGCGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig936:12417..17408+

>mRNA_H-elongata_contig936.16793.1 ID=mRNA_H-elongata_contig936.16793.1|Name=mRNA_H-elongata_contig936.16793.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2094bp|location=Sequence derived from alignment at H-elongata_contig936:12417..17408+ (Himanthalia elongata Himel1 dioecious)
ATGGACAAATTTGTTGGCCTTATCCCGGTACCGGAGAGCTCCAACGTGAC
TTCGATCGCAGGTGTTGAAGGGATTTCGGAGGTGATTGCGGGTGGGAGAC
GGCGGGAGGAGAAGTCCTTCTTCAAGATGGACAAATTTGTTGGCCTTATC
CCGGTACCGGAGAGCTCCAACGTGACTTCGATCGCAGGTGTTGAAGGGAT
TTCGGAGGTGATTGCGGGTGGGAGACGGCGGGAGGAGAAGTCCTTCTTCA
AGAGGTTGCGAGAGGAACCTAGGGAAAGAGAATTTGTTGAGGAGGTGGAA
AGGCAATCTCGAAAGGACGACGAGGAGCTGAAGCAAACCGAGCGCGTCGT
GAAGGGGCTGAGGGGAAAGGACTGGGTTTTGGACGCCGATGGCAAGAGGT
TGCGAGAGGAACCTAGGGAAAGAGAATTTGTTGAGGAGGTGGAAAGGCAA
TCTCGAAAGGACGACGAGGAGCTGAAGCAAACCGAGCGCGTCGTGAAGGG
GCTGAGGGGAAAGGACTGGGTTTTGGACGCCGATGGCAAGATTCTTCCTT
TGAACATATTAGTTGCACTCGACAAAAAACCTCTGCGAGTAGTGCTGCCG
TTCGGAGTCCGGGACTCGTCGTTGACCGGCGGTAAATCAAGGCGTGGCGG
AAACACCAGCGAAAGGACGAGGGCTGTTGCGGCGGAACCCCGTGTGCCAA
TGCGAAAGACGGCCAAGGGCACCCCGACGATAAAGCCTCGACACGACACG
GAAGCCGCTGCTGCGCAAGGAGGAGATGTACAGTGTGTTGGAGAAGCCAA
CGGCGACAACGATTGTAACGACACGCATGATAAGGGTAGAGGAGGGGGAA
CAAGGAGTGGCGGCTTACGGAGGGACTCGAAAACAAAGCGAGGGAAAAGA
TCGGGAAAACCCCCCGAAAGTACAGGAAGGCGTTTGTCAGAGAGGTTTTT
CGAGATCTTCCCGGATTTCCAGATTCTTCCTTTGAACATATTAGTTGCAC
TCGACAAAAAACCTCTGCGAGTAGTGCTGCCGTTCGGAGTCCGGGACTCG
TCGTTGACCGGCGGTAAATCAAGGCGTGGCGGAAACACCAGCGAAAGGAC
GAGGGCTGTTGCGGCGGAACCCCGTGTGCCAATGCGAAAGACGGCCAAGG
GCACCCCGACGATAAAGCCTCGACACGACACGGAAGCCGCTGCTGCGCAA
GGAGGAGATGTACAGTGTGTTGGAGAAGCCAACGGCGACAACGATTGTAA
CGACACGCATGATAAGGGTAGAGGAGGGGGAACAAGGAGTGGCGGCTTAC
GGAGGGACTCGAAAACAAAGCGAGGGAAAAGATCGGGAAAACCCCCCGAA
AGTACAGGAAGGCGTTTGTCAGAGAGGTTTTTCGAGATCTTCCCGGATTT
CCAGCCGCCTATGCTCGATGCGGCAGATCTTCGGGCCGGTGTTTGTGTTC
TGGAAGATGGTGAAGAGAGGCATGGACCGCCTTTCGAACAGCCGCCTATG
CTCGATGCGGCAGATCTTCGGGCCGGTGTTTGTGTTCTGGAAGATGGTGA
AGAGAGGCATGGACCGCCTTTCGAACAGCGCGTTCCACATCGGAGGGTCC
TTACCAGCCTGTTACCTGAAAACGTGGGCTCACGAGACGCCGGAGCGGTT
TCGGCGCTAGCGGAGGATGGTCCCCTCTCCGCCAGCACGCTACGGCGATT
CTCCGCGTTCCACATCGGAGGGTCCTTACCAGCCTGTTACCTGAAAACGT
GGGCTCACGAGACGCCGGAGCGGTTTCGGCGCTAGCGGAGGATGGTCCCC
TCTCCGCCAGCACGCTACGGCGATTCTCCGGCCCGCGGGGTGGTCCCAGC
CCCCCTCCTCCGCCGAACTCGAGCTCCCCTCTCCGATCGATCCTATCCTG
TACGGGAAAAGAAAGAAGACTCGAAGGCGAAGAAGACGATGCCGCTTTCT
TGTCGGCGGGACGGCCCGCGGGGTGGTCCCAGCCCCCCTCCTCCGCCGAA
CTCGAGCTCCCCTCTCCGATCGATCCTATCCTGTACGGGAAAAGAAAGAA
GACTCGAAGGCGAAGAAGACGATGCCGCTTTCTTGTCGGCGGGA
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