mRNA_H-elongata_contig93149.16767.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93149.16767.1
Unique NamemRNA_H-elongata_contig93149.16767.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93149.16767.1 vs. uniprot
Match: D7G5A4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A4_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.870e-48
Identity = 87/119 (73.11%), Postives = 103/119 (86.55%), Query Frame = 1 
Query:    1 PPEIQRALGRAHMLYVEGNVTDAATILSDVVVQCSSIPEPYALLALIFNDVGKHREALQFYKLASTREPRKLGHHREVARIAGILGDHESRLEALKLLARLQPTNLNVAIDRARCLLDL 357
            PPEIQ ALGRA MLYV+G V +A+T LS+VV+QCSSIPEPYALLA+I+ D GKH EAL FYKLA  R+ +  G+H+EVARIAGILGDH SRLEALK+LARL+P +LNVAI+RARCLL+L
Sbjct:   86 PPEIQAALGRARMLYVKGKVVEASTELSEVVIQCSSIPEPYALLAMIYQDGGKHEEALMFYKLACARDTKNWGNHQEVARIAGILGDHTSRLEALKVLARLRPNDLNVAIERARCLLEL 204
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BLAST of mRNA_H-elongata_contig93149.16767.1 vs. uniprot
Match: A0A7S3U166_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3U166_EMIHU)

HSP 1 Score: 57.8 bits (138), Expect = 1.440e-7
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 PPEIQRALGRAHMLYVEGNVTDAATILSDVVVQCSSIPEPYALLALIFNDVGKHREALQFYKLAS 195
            PPE+QR LG A MLY   +   A  +L +VV  C  +P PY  L LI+ + G  ++ALQ Y +A+
Sbjct:   27 PPEVQRQLGEATMLYAYRDFQKAMAMLLEVVRLCPRLPHPYETLGLIYEEEGHKKKALQLYLMAA 91
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BLAST of mRNA_H-elongata_contig93149.16767.1 vs. uniprot
Match: R1B500_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B500_EMIHU)

HSP 1 Score: 57.8 bits (138), Expect = 2.570e-7
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 PPEIQRALGRAHMLYVEGNVTDAATILSDVVVQCSSIPEPYALLALIFNDVGKHREALQFYKLAS 195
            PPE+QR LG A MLY   +   A  +L +VV  C  +P PY  L LI+ + G  ++ALQ Y +A+
Sbjct:    6 PPEVQRQLGEATMLYAYRDFQKAMAMLLEVVRLCPRLPHPYETLGLIYEEEGHKKKALQLYLMAA 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93149.16767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5A4_ECTSI2.870e-4873.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3U166_EMIHU1.440e-743.08Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
R1B500_EMIHU2.570e-743.08Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93149contigH-elongata_contig93149:1341..2269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue2.3e-41
Seed eggNOG ortholog2880.D7G5A4
Preferred nameTFC4
KEGG rclassRC00090,RC00166,RC01100
KEGG koko:K11788,ko:K12261,ko:K15201
KEGG ReactionR04144,R04208
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko04146,map00230,map01100,map01110,map01130,map04146
KEGG ModuleM00048
GOsGO:0000127,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005667,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016072,GO:0018130,GO:0019438,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042791,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090576,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.regulation of transcription by RNA polymerase III
EggNOG OGsKOG2076@1,KOG2076@2759
EC6.3.3.1,6.3.4.13
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931329.240824-CDS-H-elongata_contig93149:1340..14481622931329.240824-CDS-H-elongata_contig93149:1340..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93149 1341..1448 +
1691679792.3224816-CDS-H-elongata_contig93149:1340..14481691679792.3224816-CDS-H-elongata_contig93149:1340..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93149 1341..1448 +
1622931329.2554016-CDS-H-elongata_contig93149:2020..22691622931329.2554016-CDS-H-elongata_contig93149:2020..2269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93149 2021..2269 +
1691679792.337885-CDS-H-elongata_contig93149:2020..22691691679792.337885-CDS-H-elongata_contig93149:2020..2269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93149 2021..2269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93149.16767.1prot_H-elongata_contig93149.16767.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93149 1341..2269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93149.16767.1

>prot_H-elongata_contig93149.16767.1 ID=prot_H-elongata_contig93149.16767.1|Name=mRNA_H-elongata_contig93149.16767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
PPEIQRALGRAHMLYVEGNVTDAATILSDVVVQCSSIPEPYALLALIFND
VGKHREALQFYKLASTREPRKLGHHREVARIAGILGDHESRLEALKLLAR
LQPTNLNVAIDRARCLLDL
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mRNA from alignment at H-elongata_contig93149:1341..2269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93149.16767.1 ID=mRNA_H-elongata_contig93149.16767.1|Name=mRNA_H-elongata_contig93149.16767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=929bp|location=Sequence derived from alignment at H-elongata_contig93149:1341..2269+ (Himanthalia elongata Himel1 dioecious)
CCGCCGGAAATCCAGCGAGCACTGGGCAGGGCTCATATGCTGTATGTGGA
AGGCAATGTAACCGATGCAGCAACGATTCTCTCTGACGTCGTGGTTCAAT
GTTCATCGGTGAGTGTGGCCTTAATGCTCTAGTATGATGCCTTTGCGTAG
GCTCTATCTATGCTGCCAATGTACAGATGACTTTCCTGTGCTTTAGCTTT
GAGGAATGCCTTGCTCCTCTGTTTTCTGTGGGGAGCATTCTCGTTTTTAA
CACTTGGCCAAAGATAACATAATTAGTATTAGTATCATAATTAGTATTAG
TATCACTATTAGTATTGGTACAGCATCGTATATCATATGACTTATTGAAA
ACGATGCGTCATTTATTTGTACGTGGATGGACGGAAGTCGATTTCAGTTA
TCAAATTATTTTAGGTACTGTACTATACTATAATATACTGTACTGTACTA
TACTATACTGCACACCAGACTTAAAATAGATTAACAGTAATGCAATAGCA
CTTGTCTTTGGTGCCCTTATACGTCAGCTATAGGAGCCGTCTCGTTTATG
CATCGTACGCGAATATCAATGCCTCTTGGTTTTTGTTTTTTACGTGACGT
TGACGAGCTTACCCTGACATGAACGTGAAATATATGCTTGTTACGCTTAT
CAAGTTGCTGGCTTGCTCCACGCTTTCCAGATACCAGAGCCGTATGCTCT
ACTGGCGCTGATCTTCAATGATGTAGGGAAACATCGCGAAGCTCTCCAGT
TTTACAAACTCGCCAGTACCCGTGAGCCTAGAAAGTTGGGCCATCACCGA
GAGGTGGCACGAATCGCGGGTATCCTCGGAGACCACGAATCCAGGCTAGA
AGCTCTGAAGCTACTGGCGCGCCTCCAGCCCACGAACCTCAATGTTGCTA
TCGATAGGGCAAGGTGTTTGCTTGATCTC
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Coding sequence (CDS) from alignment at H-elongata_contig93149:1341..2269+

>mRNA_H-elongata_contig93149.16767.1 ID=mRNA_H-elongata_contig93149.16767.1|Name=mRNA_H-elongata_contig93149.16767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig93149:1341..2269+ (Himanthalia elongata Himel1 dioecious)
CCGCCGGAAATCCAGCGAGCACTGGGCAGGGCTCATATGCTGTATGTGGA
AGGCAATGTAACCGATGCAGCAACGATTCTCTCTGACGTCGTGGTTCAAT
GTTCATCGCCGCCGGAAATCCAGCGAGCACTGGGCAGGGCTCATATGCTG
TATGTGGAAGGCAATGTAACCGATGCAGCAACGATTCTCTCTGACGTCGT
GGTTCAATGTTCATCGATACCAGAGCCGTATGCTCTACTGGCGCTGATCT
TCAATGATGTAGGGAAACATCGCGAAGCTCTCCAGTTTTACAAACTCGCC
AGTACCCGTGAGCCTAGAAAGTTGGGCCATCACCGAGAGGTGGCACGAAT
CGCGGGTATCCTCGGAGACCACGAATCCAGGCTAGAAGCTCTGAAGCTAC
TGGCGCGCCTCCAGCCCACGAACCTCAATGTTGCTATCGATAGGGCAAGG
TGTTTGCTTGATCTCATACCAGAGCCGTATGCTCTACTGGCGCTGATCTT
CAATGATGTAGGGAAACATCGCGAAGCTCTCCAGTTTTACAAACTCGCCA
GTACCCGTGAGCCTAGAAAGTTGGGCCATCACCGAGAGGTGGCACGAATC
GCGGGTATCCTCGGAGACCACGAATCCAGGCTAGAAGCTCTGAAGCTACT
GGCGCGCCTCCAGCCCACGAACCTCAATGTTGCTATCGATAGGGCAAGGT
GTTTGCTTGATCTC
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