mRNA_H-elongata_contig93147.16766.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93147.16766.1
Unique NamemRNA_H-elongata_contig93147.16766.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93147.16766.1 vs. uniprot
Match: D8LIL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL4_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.660e-65
Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 1 
Query:    1 RVFVRFGQAIGVIAWESLDDFPDARKIVMNANSAWPMFISVVFIPQCLMAFYLIGTPSLCEGVPARERVYWEEGGGYFRRGTLSAGISQAFPFSVDWRSMLDAVGEEGLVERLRGFACTRTPLLYFTRPYPSPRRTMSAVLLVGLVQYTQV 453
            RVFVRFGQAIGVIAWESLDDFPDARKIV +A S WPMFI +VFIPQCLMA  L+GTP LC+GV   ERV     GG F R     GISQAFPF + W+S L+A  ++GL +RL+ F C RTPLLY TRPYP+PRRTMSAVL+VGLVQY QV
Sbjct:  124 RVFVRFGQAIGVIAWESLDDFPDARKIVNHATSQWPMFIFIVFIPQCLMALSLVGTPWLCKGVAVPERV-----GGVFHR---DPGISQAFPFHLKWQSFLEAARQDGLADRLQSFVCVRTPLLYLTRPYPNPRRTMSAVLVVGLVQYVQV 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93147.16766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIL4_ECTSI1.660e-6569.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93147contigH-elongata_contig93147:898..2268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_004290.1
Exons3
Model size453
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93147.16766.1prot_H-elongata_contig93147.16766.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93147 898..2268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931329.1639972-CDS-H-elongata_contig93147:897..10061622931329.1639972-CDS-H-elongata_contig93147:897..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93147 898..1006 -
1691679792.2843325-CDS-H-elongata_contig93147:897..10061691679792.2843325-CDS-H-elongata_contig93147:897..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93147 898..1006 -
1622931329.1863906-CDS-H-elongata_contig93147:1548..16521622931329.1863906-CDS-H-elongata_contig93147:1548..1652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93147 1549..1652 -
1691679792.294252-CDS-H-elongata_contig93147:1548..16521691679792.294252-CDS-H-elongata_contig93147:1548..1652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93147 1549..1652 -
1622931329.201728-CDS-H-elongata_contig93147:2028..22681622931329.201728-CDS-H-elongata_contig93147:2028..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93147 2029..2268 -
1691679792.3069046-CDS-H-elongata_contig93147:2028..22681691679792.3069046-CDS-H-elongata_contig93147:2028..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93147 2029..2268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93147.16766.1

>prot_H-elongata_contig93147.16766.1 ID=prot_H-elongata_contig93147.16766.1|Name=mRNA_H-elongata_contig93147.16766.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
RVFVRFGQAIGVIAWESLDDFPDARKIVMNANSAWPMFISVVFIPQCLMA
FYLIGTPSLCEGVPARERVYWEEGGGYFRRGTLSAGISQAFPFSVDWRSM
LDAVGEEGLVERLRGFACTRTPLLYFTRPYPSPRRTMSAVLLVGLVQYTQ
V
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mRNA from alignment at H-elongata_contig93147:898..2268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93147.16766.1 ID=mRNA_H-elongata_contig93147.16766.1|Name=mRNA_H-elongata_contig93147.16766.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1371bp|location=Sequence derived from alignment at H-elongata_contig93147:898..2268- (Himanthalia elongata Himel1 dioecious)
AGGGTGTTCGTTCGATTCGGCCAGGCCATTGGCGTCATCGCGTGGGAGTC
CCTCGATGATTTCCCCGACGCGCGAAAGATCGTGATGAATGCCAACTCCG
CCTGGCCCATGTTCATCTCCGTCGTGTTCATTCCCCAGTGCCTCATGGCC
TTCTACCTTATTGGAACTCCCTCGCTCTGCGAGGGCGTCCCAGCCCGTGA
GCGTGTGTATTGGGAGGAGGGGGGGGGGTATTTTCGACGGGTAGCGAGCA
AAAGGCACACCAAGTGCGGGAGACGACAGGAAACGAAATCGTTCCTTCTC
CCTTCCCCTGAGCAAGTTGATTGACATTGACATTGACATGGCTTGCTAGC
AAAGGTGGCAGATGAGGGATTCGCTAAGGGCGGCGCTCAAGAAAAACCGC
AGGCGCGCTCACCCACAAATATACACACACACGCACACACACACACACAC
ACACACATAATATAATATTCTCTATGAAAGCCAAACCCTTCACTACACAG
TACTCTCGGCTTTCTTTCCTCTTTTCCGGCGGGGGGGGGTGGGGAACGGT
GGTGGCGGGGGGGGTTGTTTACGTGCAGCTGATCCAGCGGGGGGAACCTT
TTACCCGATGGCGGAGGGCACGCTCTCGGCCGGTATCAGCCAGGCTTTCC
CATTCAGCGTGGACTGGAGGAGCATGCTGGACGCGGTAGGAGAGGAGGGG
CTCGTGGAGAGGCTTAGGGGGTGCGCGCTGATCCTCCGTCTCGTTTTCGA
CCGACTCCCCGCTCGACACACACCCGTTTGCCTTTGGAGAGTAGGTGTAC
GAAGTATCGTCGATATCGAAGCAATAATGCCTGTCTGCTGTGTGTGTCTG
TCTGCCTGTCTGTCTACTTGCCCTAGTTCGGTTTTGATTCGGTATTAATT
CGGATTGGGGCTCTGCCTGCCTGCTCGAGTCGGCACCCGGAAGCTCTCAA
AACGCCGTCGAGATGATTTCGCCCAGCATTTTCATGAAAAGTGTTTTTGT
GTGATAACTAGAAATACTACTCTACTTGTATTATATTATAGCGAACGGAG
GACCTCCTCCATTAATACCTATATACTACATGTATATATATCTATATAAA
TATTGTATCGATCTACGATAACCCCCGCCGCCTATTTTTTGTTTTACTCT
CTTGTTGCTTTCTTCCCTTAATGGGATGACCATCTATTAATGGTGCGACC
TTCCCACGACGTCTCTCGCCGGCACTGCGGTCGCGGCGGTCCCCGGTTCC
GCTCCGACACAGCTTCGCCTGCACGCGAACGCCTCTGCTGTACTTCACGA
GACCCTACCCAAGCCCGCGAAGGACTATGTCCGCGGTGCTGTTGGTTGGA
TTGGTGCAGTACACACAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig93147:898..2268-

>mRNA_H-elongata_contig93147.16766.1 ID=mRNA_H-elongata_contig93147.16766.1|Name=mRNA_H-elongata_contig93147.16766.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig93147:898..2268- (Himanthalia elongata Himel1 dioecious)
AGGGTGTTCGTTCGATTCGGCCAGGCCATTGGCGTCATCGCGTGGGAGTC
CCTCGATGATTTCCCCGACGCGCGAAAGATCGTGATGAATGCCAACTCCG
CCTGGCCCATGTTCATCTCCGTCGTGTTCATTCCCCAGTGCCTCATGGCC
TTCTACCTTATTGGAACTCCCTCGCTCTGCGAGGGCGTCCCAGCCCGTGA
GCGTGTGTATTGGGAGGAGGGGGGGGGGTATTTTCGACGGAGGGTGTTCG
TTCGATTCGGCCAGGCCATTGGCGTCATCGCGTGGGAGTCCCTCGATGAT
TTCCCCGACGCGCGAAAGATCGTGATGAATGCCAACTCCGCCTGGCCCAT
GTTCATCTCCGTCGTGTTCATTCCCCAGTGCCTCATGGCCTTCTACCTTA
TTGGAACTCCCTCGCTCTGCGAGGGCGTCCCAGCCCGTGAGCGTGTGTAT
TGGGAGGAGGGGGGGGGGTATTTTCGACGGGGCACGCTCTCGGCCGGTAT
CAGCCAGGCTTTCCCATTCAGCGTGGACTGGAGGAGCATGCTGGACGCGG
TAGGAGAGGAGGGGCTCGTGGAGAGGCTTAGGGGGGCACGCTCTCGGCCG
GTATCAGCCAGGCTTTCCCATTCAGCGTGGACTGGAGGAGCATGCTGGAC
GCGGTAGGAGAGGAGGGGCTCGTGGAGAGGCTTAGGGGCTTCGCCTGCAC
GCGAACGCCTCTGCTGTACTTCACGAGACCCTACCCAAGCCCGCGAAGGA
CTATGTCCGCGGTGCTGTTGGTTGGATTGGTGCAGTACACACAGGTACTT
CGCCTGCACGCGAACGCCTCTGCTGTACTTCACGAGACCCTACCCAAGCC
CGCGAAGGACTATGTCCGCGGTGCTGTTGGTTGGATTGGTGCAGTACACA
CAGGTA
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