mRNA_H-elongata_contig9305.16756.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9305.16756.1
Unique NamemRNA_H-elongata_contig9305.16756.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9305.16756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9305contigH-elongata_contig9305:4940..5610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_000720.1
Exons2
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931328.24489-CDS-H-elongata_contig9305:4939..51091622931328.24489-CDS-H-elongata_contig9305:4939..5109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9305 4940..5109 +
1691679792.0029097-CDS-H-elongata_contig9305:4939..51091691679792.0029097-CDS-H-elongata_contig9305:4939..5109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9305 4940..5109 +
1622931328.2601564-CDS-H-elongata_contig9305:5483..56101622931328.2601564-CDS-H-elongata_contig9305:5483..5610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9305 5484..5610 +
1691679792.0130134-CDS-H-elongata_contig9305:5483..56101691679792.0130134-CDS-H-elongata_contig9305:5483..5610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9305 5484..5610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9305.16756.1prot_H-elongata_contig9305.16756.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9305 4940..5610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9305.16756.1

>prot_H-elongata_contig9305.16756.1 ID=prot_H-elongata_contig9305.16756.1|Name=mRNA_H-elongata_contig9305.16756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MESRRDAWIGASGHILLHALERSGVNASLDSGRDGFKDGVLDEQYKQLLE
NCVRPAWYMDEDTTKKVTWKLMFPRRGPGATELTPSSSTVTGDEVTRVA
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mRNA from alignment at H-elongata_contig9305:4940..5610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9305.16756.1 ID=mRNA_H-elongata_contig9305.16756.1|Name=mRNA_H-elongata_contig9305.16756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=671bp|location=Sequence derived from alignment at H-elongata_contig9305:4940..5610+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAGCCGGCGCGATGCATGGATTGGGGCGAGCGGGCATATACTGCT
TCACGCGCTCGAACGCTCGGGGGTTAACGCTTCTCTTGATAGTGGAAGAG
ACGGTTTTAAGGATGGTGTACTGGACGAGCAATACAAGCAGCTGCTAGAG
AATTGCGTCCGACCAGCCTGGTGAGGGCCTGTCAAGCAGGGAACGGAACG
ATCAAATGATATAAACGCCGACCGGTGATTTAACGGTTGGGGCATTCTAG
AGAGAGTTTGCCTATAAGCGGTTGGAGGGCGCATCTCAAGCATAAATGTA
AAAAGGGAAGTATTTGTTAGACTTGTCGAAATTCGAAATGAATTGCCTCT
TTGAATTTCAAACCAAAGCTCGTAGATAGCAATGATTTACCACCAAGCAC
ATCTCTCGGTGCGCGTTCTATCCTTCTATTCCACCCGCATGTCTCGTGAG
GCCGCTCCACGTCCGCCACCAACAAACCGATACACGATTCCGACGTGCGC
CGTCAATGCTCGGTTGCTGTTTTTGACAATGCTCAACCTCTCAGGTATAT
GGACGAGGACACAACGAAAAAGGTAACATGGAAACTGATGTTCCCTAGAA
GAGGTCCAGGAGCTACGGAGCTAACACCCTCTTCTTCAACCGTTACTGGA
GATGAAGTCACAAGGGTGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig9305:4940..5610+

>mRNA_H-elongata_contig9305.16756.1 ID=mRNA_H-elongata_contig9305.16756.1|Name=mRNA_H-elongata_contig9305.16756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig9305:4940..5610+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAGCCGGCGCGATGCATGGATTGGGGCGAGCGGGCATATACTGCT
TCACGCGCTCGAACGCTCGGGGGTTAACGCTTCTCTTGATAGTGGAAGAG
ACGGTTTTAAGGATGGTGTACTGGACGAGCAATACAAGCAGCTGCTAGAG
AATTGCGTCCGACCAGCCTGATGGAGAGCCGGCGCGATGCATGGATTGGG
GCGAGCGGGCATATACTGCTTCACGCGCTCGAACGCTCGGGGGTTAACGC
TTCTCTTGATAGTGGAAGAGACGGTTTTAAGGATGGTGTACTGGACGAGC
AATACAAGCAGCTGCTAGAGAATTGCGTCCGACCAGCCTGGTATATGGAC
GAGGACACAACGAAAAAGGTAACATGGAAACTGATGTTCCCTAGAAGAGG
TCCAGGAGCTACGGAGCTAACACCCTCTTCTTCAACCGTTACTGGAGATG
AAGTCACAAGGGTGGCGGTATATGGACGAGGACACAACGAAAAAGGTAAC
ATGGAAACTGATGTTCCCTAGAAGAGGTCCAGGAGCTACGGAGCTAACAC
CCTCTTCTTCAACCGTTACTGGAGATGAAGTCACAAGGGTGGCG
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