mRNA_H-elongata_contig93029.16753.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93029.16753.1
Unique NamemRNA_H-elongata_contig93029.16753.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.450e-33
Identity = 60/112 (53.57%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVT 333
            ++ + CNTLLWLLP GCTDE+Q VD G GR ++  + + LD WL +GD+++ WE   LTAS+RR+L+TQW    ++KI++D + R RLF+KTG  +TADGS D  INLEGV+
Sbjct: 1681 YLYKECNTLLWLLPAGCTDELQPVDAGMGRRMKTGMGRQLDSWLEHGDNLQQWEDGSLTASERRVLLTQWVAEVIEKINADQQYRSRLFEKTGTGMTADGSGDERINLEGVS 1792          
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5L6W3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.430e-32
Identity = 62/118 (52.54%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVTQDTYSF 351
            ++ + CNT+ WL P  CTDEVQ VD G GR ++V V   +D+WL   D++E WE+  LTASDRR+LITQWT  AV K++S+   R RLF+K G+A+T DGS D+ I LEG+ Q  Y+F
Sbjct:   94 YLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVGNEMDKWLDQSDNIERWETASLTASDRRVLITQWTGAAVAKLNSNQGYRHRLFEKCGMAMTVDGSGDDRITLEGLDQP-YTF 210          
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5KH13_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH13_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.160e-31
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVTQDTYSF 351
            ++ + CNT+ WL P  CTDEVQ VD G GR ++V V   +D+WL   D++E WE+  LTASDRR+LITQWT  A+ K++S+   R RLF+K G+A+T DGS D+ I LEG+ Q  Y+F
Sbjct:  281 YLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVGNEMDKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQGYRHRLFEKCGMAMTVDGSGDDRITLEGLDQP-YTF 397          
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5JKG3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG3_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.500e-30
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVTQDTYSF 351
            ++ + CNT+ WL P  CTDEVQ VD G GR ++V V   +D+WL   D++E WE+  LTASDRR+LITQWT  A+ K++S+   R RLF+K G+A+T DGS D+ I LEG+ Q  Y+F
Sbjct:  443 YLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVGNEMDKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQGYRHRLFEKCGMAMTVDGSGDDRITLEGLDQP-YTF 559          
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.660e-30
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVTQDTYSF 351
            ++ + CNT+ WL P  CTDEVQ VD G GR ++V V   +D+WL   D++E WE+  LTASDRR+LITQWT  A+ K++S+   R RLF+K G+A+T DGS D+ I LEG+ Q  Y+F
Sbjct:  625 YLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVGNEMDKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQGYRHRLFEKCGMAMTVDGSGDDRITLEGLDQP-YTF 741          
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.040e-30
Identity = 61/118 (51.69%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVTQDTYSF 351
            ++ + CNT+ WL P  CTDEVQ VD G GRL++V V   +D+WL   +++E WE+  LTASDRR+LITQWT  A+ K++S+   R RLF+K G+A+T DGS D+ I LEG+ Q  Y+F
Sbjct:  511 YLAKQCNTIAWLGPADCTDEVQPVDAGAGRLLKVEVGNEVDKWLDQSNNIERWETASLTASDRRVLITQWTGAAMAKLNSNQGYRHRLFEKCGMAMTVDGSGDDRITLEGLDQP-YTF 627          
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5K187_9PHAE (DDE-1 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K187_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.730e-30
Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVTQDTYSF 351
            ++ + CNT+ WL P  CTDEVQ VD G GR ++V V   +D+WL   D++E WE+  LTASDR +LITQWT  A+ K++S+   R RLF+K G+A+T DGS D+ I LEG+ Q  Y+F
Sbjct:   94 YLAKQCNTIAWLGPAECTDEVQPVDAGAGRFLKVEVGSEMDKWLDQSDNIERWETASLTASDRCVLITQWTGAAMAKLNSNQGYRHRLFEKCGMAMTVDGSGDDRITLEGLDQP-YTF 210          
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5KNG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.830e-30
Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVTQDTYSF 351
            ++ + CNT+ WL P  CTDEVQ VD G GR V+V V   +D+WL   D++E WE+  LTASDRR LITQWT  A  K++S+   R  LF+K G+A+T DGS DN I LEG+    Y+F
Sbjct:   42 YLAKQCNTIAWLGPSECTDEVQPVDAGAGRFVKVEVGSEMDKWLDQSDNIERWETVSLTASDRRALITQWTGGARAKLNSNQGYRHHLFEKCGMAMTVDGSGDNRITLEGL-DPPYTF 158          
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5JFU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU2_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 8.600e-30
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVTQDTYSF 351
            ++ + CNTL W  P  CTDEVQ VD G GR ++V V + LD WL   D++E WE+  LTASDRR+LITQW   A+ +++S    R RLFKK G+A+T DGS D+ I LEG+ +  Y+F
Sbjct:   30 YLAKHCNTLAWYGPSVCTDEVQPVDAGAGRFLKVEVGRQLDMWLEQSDNLERWETASLTASDRRVLITQWMGAAMARLNSQQAYRYRLFKKCGMAMTGDGSGDDRITLEGLDKP-YTF 146          
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Match: A0A6H5KZ92_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ92_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.020e-29
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHVEMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADGS-DNLINLEGVTQDTYSF 351
            ++ + CNT+ WL P  CTDEVQ VD G GR ++V V   +D+WL   D +E WE+  LTASDRR+LITQWT  A+ K++S+   R R F+K G+A+T DGS D+ I LEG+ Q  Y+F
Sbjct:  471 YLAKQCNTIAWLGPAQCTDEVQPVDAGAGRFLEVEVGNEMDKWLDQSDKIERWETASLTASDRRVLITQWTGAAMAKLNSNQGYRHRRFEKCGMAMTVDGSGDDRITLEGLDQP-YTF 587          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93029.16753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE3.450e-3353.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6W3_9PHAE1.430e-3252.54DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KH13_9PHAE4.160e-3151.69DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JKG3_9PHAE1.500e-3051.69DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFX9_9PHAE1.660e-3051.69C2H2-type domain-containing protein n=15 Tax=Ectoc... [more]
A0A6H5KDV1_9PHAE2.040e-3051.69C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K187_9PHAE2.730e-3050.85DDE-1 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KNG7_9PHAE4.830e-3051.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFU2_9PHAE8.600e-3050.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ92_9PHAE1.020e-2950.85DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93029contigH-elongata_contig93029:1766..2116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue2e-26
Seed eggNOG ortholog2880.D7FI08
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931328.09609-CDS-H-elongata_contig93029:1765..21161622931328.09609-CDS-H-elongata_contig93029:1765..2116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93029 1766..2116 +
1691679791.9677727-CDS-H-elongata_contig93029:1765..21161691679791.9677727-CDS-H-elongata_contig93029:1765..2116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93029 1766..2116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93029.16753.1prot_H-elongata_contig93029.16753.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93029 1766..2116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93029.16753.1

>prot_H-elongata_contig93029.16753.1 ID=prot_H-elongata_contig93029.16753.1|Name=mRNA_H-elongata_contig93029.16753.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
WVVESCNTLLWLLPPGCTDEVQAVDTGYGRLVQVYVAQMLDEWLLNGDHV
EMWESNKLTASDRRILITQWTDRAVKKIDSDIRNRRRLFKKTGLAVTADG
SDNLINLEGVTQDTYSF
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mRNA from alignment at H-elongata_contig93029:1766..2116+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93029.16753.1 ID=mRNA_H-elongata_contig93029.16753.1|Name=mRNA_H-elongata_contig93029.16753.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig93029:1766..2116+ (Himanthalia elongata Himel1 dioecious)
TGGGTTGTTGAAAGTTGTAACACGCTGCTCTGGCTTCTTCCCCCGGGATG CACGGATGAGGTGCAAGCTGTGGATACCGGCTACGGACGGCTCGTCCAGG TCTACGTGGCACAGATGCTTGACGAGTGGCTCCTAAACGGCGACCACGTA GAGATGTGGGAGTCCAACAAGCTGACCGCGTCCGACCGTCGGATTTTGAT CACGCAATGGACCGACAGGGCCGTGAAGAAGATCGACAGCGACATTAGAA ACCGCAGGCGCCTGTTCAAGAAGACGGGGCTAGCGGTGACAGCGGACGGT AGCGACAACCTCATCAACCTTGAAGGCGTGACGCAAGACACGTACTCGTT C
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Coding sequence (CDS) from alignment at H-elongata_contig93029:1766..2116+

>mRNA_H-elongata_contig93029.16753.1 ID=mRNA_H-elongata_contig93029.16753.1|Name=mRNA_H-elongata_contig93029.16753.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig93029:1766..2116+ (Himanthalia elongata Himel1 dioecious)
TGGGTTGTTGAAAGTTGTAACACGCTGCTCTGGCTTCTTCCCCCGGGATG
CACGGATGAGGTGCAAGCTGTGGATACCGGCTACGGACGGCTCGTCCAGG
TCTACGTGGCACAGATGCTTGACGAGTGGCTCCTAAACGGCGACCACGTA
GAGATGTGGGAGTCCAACAAGCTGACCGCGTCCGACCGTCGGATTTTGAT
CACGCAATGGACCGACAGGGCCGTGAAGAAGATCGACAGCGACATTAGAA
ACCGCAGGCGCCTGTTCAAGAAGACGGGGCTAGCGGTGACAGCGGACGGT
AGCGACAACCTCATCAACCTTGAAGGCGTGACGCAAGACACGTACTCGTT
CTGGGTTGTTGAAAGTTGTAACACGCTGCTCTGGCTTCTTCCCCCGGGAT
GCACGGATGAGGTGCAAGCTGTGGATACCGGCTACGGACGGCTCGTCCAG
GTCTACGTGGCACAGATGCTTGACGAGTGGCTCCTAAACGGCGACCACGT
AGAGATGTGGGAGTCCAACAAGCTGACCGCGTCCGACCGTCGGATTTTGA
TCACGCAATGGACCGACAGGGCCGTGAAGAAGATCGACAGCGACATTAGA
AACCGCAGGCGCCTGTTCAAGAAGACGGGGCTAGCGGTGACAGCGGACGG
TAGCGACAACCTCATCAACCTTGAAGGCGTGACGCAAGACACGTACTCGT
TC
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