mRNA_H-elongata_contig9299.16747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9299.16747.1
Unique NamemRNA_H-elongata_contig9299.16747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: D7G7N2_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N2_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 9.150e-112
Identity = 232/448 (51.79%), Postives = 261/448 (58.26%), Query Frame = 1
Query:   64 EELLESARLATDEDRLDDAADALRRAAQLSPLDGDVLYRAGVCAINQGRWSRAVRLWREGLMLSPDNSQLKHEAERYRALAFWLD---------SPHDSGAECQDIRPFSHPNPLXXXXXXXXXXXXXXXXXXXDRACGLA--------DSLDVTFMAGPGEWVSETRGPPPLSRSECALVIQEAEETAASSR--------------NGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAG----------------------------EAFGVCAKEDEDEDITGLEE-----------------------------EEEEELGA-----------FVARLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFLYEH 1110
            E LL++A+ A DEDR DDA +AL RAA+ +P + D+LYRAGVCAINQGRWSRA+RLWR+GL LSPD+ +LK EAE+Y+ALAFWLD         +   SGA              XXXXXXXXXXXXXXXXX  D     A        D+LDV FM G GEWV  TR P  LS SEC+ ++ EAEE A+                  GWGT+RHYAVPTTD+AVR+LPRTLAWFN AMR RI P VA AAALG G                             A  VC+  D DE     E                              E EE  G             + RLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLN   EYEGGGTWF GLG AVRP + GHVV+FPGG  VHGG  +T G+RYILAVFLYEH
Sbjct:  105 ERLLKAAQQAVDEDRFDDAFEALSRAARAAPDNSDILYRAGVCAINQGRWSRALRLWRDGLALSPDHPELKREAEKYQALAFWLDPGKGDANPDARSSSGALVGAATXXXXXXXXXXXXXXXXXXXXXXXXXQDDGFTATALLPAGEAFDNLDVDFMTGHGEWVCSTRLPL-LSASECSAIVNEAEEKASXXXXXXXXXXXXXXXXXGGWGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGPTVAVAAALGGGVFERPGRRSGSLKRSPPVAEPHAQDEDFPARAVCSAADSDEAAESAEALRASASVEPENGQERRQVESDDDQXXXXXEAEEPRGRPGAPTPXXPALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGEYEGGGTWFEGLGSAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEH 551          
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: A0A6H5L5S3_9PHAE (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5S3_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 4.810e-83
Identity = 190/397 (47.86%), Postives = 215/397 (54.16%), Query Frame = 1
Query:  217 RAVRLWREGLMLSPDNSQLKHEAERYRALAFWLDSPH-DSGAECQD--------------------IRPFSHPNPLXXXXXXXXXXXXXXXXXXXDRACGLA-DSLDVTFMAGPGEWVSETRGPPPLSRSECALVIQEAEETAASSR---------------NGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAG----------------------------EAFGVCAKEDEDE-----------------------DITGLEEEEEEELGA-----------FVARLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFLYEH 1110
            RA+RLW++GL LSP++ +LK EAE+Y+ALAFWLD    D+  + +                               XXXXXXXXXX             G A D+LDV FMAG GEWV  TR P  +S SEC+ +I EAEE A                   +GWGT+RHYAVPTTD+AVR+LPRTLAWFN AMR RI P VA AAALG G                             A  VC+  D DE                       D  G   E EE  G             + RLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLN   EYEGGGTWF GLGRAVRP + GHVV+FPGG  VHGG  +T G+RYILAVFLYEH
Sbjct:  593 RALRLWKDGLALSPNHPELKREAEKYQALAFWLDPGEGDANTDARSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDDGFTAPAQLPAGEAFDNLDVDFMAGDGEWVCSTRLPL-ISASECSAIINEAEEKAXXXXXXXXXXXXXXXXXXXSGWGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGPTVAVAAALGGGIFERPGRRSGSLELSPPVAKPHAKDEDFPAHAVCSAADSDEAAAAIALIAPEDGQKGRQVESDDDQEGQSREAEEPRGRAGAPXXXXXALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGEYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGKEVTRGVRYILAVFLYEH 988          
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: A0A7S4F157_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F157_CHRCT)

HSP 1 Score: 161 bits (408), Expect = 6.170e-42
Identity = 118/353 (33.43%), Postives = 162/353 (45.89%), Query Frame = 1
Query:   73 LESARLATDEDRLDDAADALRRAAQLSPLDGDVLYRAGVCAINQGRWSRAVRLWREGLMLSPDNSQLKHEAERYRALAFWLDSPHDSGAEC-QDIRPFSHPNPLXXXXXXXXXXXXXXXXXXXDRACGLADSLDVTF-----MAGPG---EWVSETRGPPPLSRSECALVIQEAEETAASSRNGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAGEAFGVCAKEDEDEDITGLEEEEEEELGAFVARLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFLY 1104
            +E A  A  E R DDA    R A ++   DG+  +  G   ++ G W+ A R WREG   +P +  L  +  +  A A    +  D+     Q   P    + L                   +       +  V F         G     V  T   P LS+++CA  I  AEE A  +  GW TARHYAVPTTD+ V   P  LAWF   MR  +AP +++   +GA                                 +RVHDAF+V+Y AAAQ  LP+H D+ +LS+T+ LN   EY+GGGT+F+ L RAVRP + G ++ F G   +HGG  I  G+RY+LA FLY
Sbjct:   72 MELAATAMVEGRHDDAERFARMALRVDATDGNAWHLRGAALLSSGLWAAAHREWREGRARAPSHELLASQCAKDLAYASASATRQDNEMGLPQAAAPSPPSSQLPSSSLSPSQPSSSSAVAVAETPTAAVVNSSVLFDEAEPCTNDGMRLRIVCSTA--PVLSQAQCASAIAMAEEFA-QTEGGWTTARHYAVPTTDLPVHKCPCLLAWFKELMRSAVAPFLSSNFEVGAD-------------------------------AVRVHDAFIVKYHAAAQARLPMHFDESQLSITLPLNESSEYDGGGTYFYALRRAVRP-EQGQLLAFSG-ALLHGGEPIVRGVRYVLAAFLY 388          
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: A0A7S4BI62_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BI62_CHRCT)

HSP 1 Score: 149 bits (377), Expect = 5.890e-38
Identity = 107/315 (33.97%), Postives = 145/315 (46.03%), Query Frame = 1
Query:  187 VCAINQGRWSRAVRLWREGLMLSPDNSQLKHEAERYRALAFWLDSPHDSGAEC-QDIRPFSHPNPLXXXXXXXXXXXXXXXXXXXDRACGLADSLDVTF-----MAGPG---EWVSETRGPPPLSRSECALVIQEAEETAASSRNGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAGEAFGVCAKEDEDEDITGLEEEEEEELGAFVARLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFLY 1104
            +CA   G W+ A R WREG   +P +  L  +  +  A A    +  D+     Q   P    + L                   +       +  V F         G     V  T   P LS+++CA  I  AEE A  +  GW TARHYAVPTTD+ V   P  LAWF   MR  +AP +++   +GA                                 +RVHDAF+V+Y AAAQ  LP+H D+ +LS+T+ LN   EY+GGGT+F+ L RAVRP + G ++ F G   +HGG  I  G+RY+LA FLY
Sbjct:   52 LCAAPSGLWAAAHREWREGRARAPSHELLASQCAKDLAYASASATRQDNEMGLPQAAAPSPPSSQLPSSSLSPSQPSSSSAVAVAETPTAAVVNSSVLFDEAEPCTNDGMRLRIVCSTA--PVLSQAQCASAIAMAEEFA-QTEGGWTTARHYAVPTTDLPVHKCPCLLAWFKELMRSAVAPFLSSNFEVGAD-------------------------------AVRVHDAFIVKYHAAAQARLPMHFDESQLSITLPLNESSEYDGGGTYFYALRRAVRP-EQGQLLAFSG-ALLHGGEPIVRGVRYVLAAFLY 330          
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: F0Y9Z7_AURAN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Z7_AURAN)

HSP 1 Score: 153 bits (387), Expect = 2.840e-37
Identity = 126/350 (36.00%), Postives = 164/350 (46.86%), Query Frame = 1
Query:   70 LLESARLATDEDRLDDAADALRRAAQLSPLDGDVLYRAGVCAINQGRWSRAVRLWREGLMLSPDNSQL-KH--EAERYRALAFWLDSPHDSGAECQDIRPFSHPNPLXXXXXXXXXXXXXXXXXXXDRACGLADSLDVTFMAGPGEWVSETRGPPPLSRSECALVIQEAEETAASSRNGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAGEAFGVCAKEDEDEDITGLEEEEEEELGAFVARLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFLYEH 1110
            L + A  A  + R +DA  A      L+P D D LY          RWS   RL R  L L+PD++++ KH  +A+ Y A A       D     +   PF                              L           P  +V      P +  + CA  I  AE  A S   GW TARH+AVPTTD+ VR++P  L WFN A+R  I P      ALGA               + GL+           ARLRV DAF+V+Y AAAQRSLPLH+DQ ++S+T+ LNS  +Y+GGGT+FH L +AV   D G +V FPG    H G AIT G R+++  FLYE+
Sbjct:  612 LRDIAACAQADGRHEDALAAFCALLVLAPRDADALYGRARVTGWMDRWSAERRLMRAALDLAPDDARIRKHVGDADAYHAGAC------DVAGWAKRRVPFE----------------------------ALERPKSDDXXXEPPAYVYAF-DEPVVPAASCADAIAIAEAHA-SHGGGWTTARHFAVPTTDVPVREVPALLKWFNDALRSSIFP------ALGA---------------LYGLDP----------ARLRVIDAFLVKYSAAAQRSLPLHSDQSQISITLPLNSSADYDGGGTYFHDLRQAVN-RDAGGLVAFPG-FLPHAGHAITRGTRFVVVAFLYEY 892          
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: R1G8J0_EMIHU (Fe2OG dioxygenase domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G8J0_EMIHU)

HSP 1 Score: 153 bits (386), Expect = 3.890e-37
Identity = 118/338 (34.91%), Postives = 154/338 (45.56%), Query Frame = 1
Query:  112 DDAADALRRAAQLSPLDGDVLYRAGVCAINQGRWSRAVRLWREGLMLSPDNSQLKHEAERYRALAFWLDSPHDSGAECQDIRPFSHPNPLXXXXXXXXXXXXXXXXXXXDRACGLADSLDV-----TFMAGPGEWVSETRGPPPLSRSECALVIQEAEETAASSRNGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAGEAFGVCAKEDEDEDITGLEEEEEEELGAFVARLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFL-YE 1107
            D A  A  +A +LSP  GDV    G      G  + +  ++  G+  +P ++ L+ EA+R  A AF L +P  +     D+     P                             +S+D+     TF   P  +VS+    P L +  C   I  AE  AA S  GW TARH++V TTDI +  L   L  FN A+R  + P            A   C  E                     + LRV D F+VRYDA  Q SLP HTDQ  LS TI+LN   EY+GGGTWF GLGRAV     GH V+FPG +  HGG  IT G+RYI+ +F+ YE
Sbjct:  668 DAATSAFAQALRLSPASGDVWNDLGTSLFFAGELAESSLVYAAGVQRAPSHAALRAEAKR--AAAFPL-APRSADQITVDLFGGGAPRSGGAPGGGTFASEFTAIPLPEGSYGSRPESVDLQAGAETFGERPRVFVSQR---PLLPKPTCERYIAAAEAWAARS-GGWTTARHHSVATTDIPLTSLDELLPSFNEALRTLLLP------------ALSACYPE----------------AAPLASSLRVLDCFLVRYDATKQASLPTHTDQSLLSFTIALNDPGEYDGGGTWFRGLGRAVDAPAAGHAVLFPG-KVEHGGHPITRGVRYIIVLFMGYE 969          
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: A0A7S3T9C2_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T9C2_EMIHU)

HSP 1 Score: 142 bits (357), Expect = 5.310e-37
Identity = 91/193 (47.15%), Postives = 111/193 (57.51%), Query Frame = 1
Query:  529 LSRSECALVIQEAEETAASSRNGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAGEAFGVCAKEDEDEDITGLEEEEEEELGAFVARLRVHDAFVVRYDAAA-QRSLPLHTDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFLY 1104
             S +EC   +  AE  AA S  GW T+RH AVPTTD+ V ++P  L WFN AM  RIAPL+AA         F V A                       A +RVHDAF+VRY A+  Q  LPLHTD+  LSLT+ LN  DE+EGGGT+F  L R++ P   GH+V F G  A+HGG  I SG+RYI+A FLY
Sbjct:    2 FSAAECERAVAAAEAHAAKS-GGWTTSRHRAVPTTDVPVHEVPELLRWFNHAMAGRIAPLLAAQ--------FRVAA-----------------------ADIRVHDAFLVRYSASGGQAHLPLHTDESVLSLTVVLN--DEFEGGGTFFADLRRSLSPP-VGHLVAFHG-RALHGGEPIVSGVRYIVAAFLY 158          
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: R1DHQ3_EMIHU (Fe2OG dioxygenase domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DHQ3_EMIHU)

HSP 1 Score: 143 bits (361), Expect = 7.960e-36
Identity = 98/218 (44.95%), Postives = 120/218 (55.05%), Query Frame = 1
Query:  457 ADSLDVTFMAGPGEWVSETRGPPPL-SRSECALVIQEAEETAASSRNGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAGEAFGVCAKEDEDEDITGLEEEEEEELGAFVARLRVHDAFVVRYDAAA-QRSLPLHTDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFLY 1104
            A   +V  +AG G          PL S +EC   +  AE  AA S  GW T+RH AVPTTD+ V ++P  L WFN AM  RIAPL+AA         F V A                       A +RVHDAF+VRY A+  Q  LPLHTD+  LSLT+ LN  DE+EGGGT+F  L R++ P   GH+V F G  A+HGG  I SG+RYI+A FLY
Sbjct:  158 AAPCEVHALAGGGPACKVVVSRSPLFSAAECERAVAAAEAHAAKS-GGWTTSRHRAVPTTDVPVHEVPELLRWFNHAMAGRIAPLLAAQ--------FRVAA-----------------------ADIRVHDAFLVRYSASGGQAHLPLHTDESVLSLTVVLN--DEFEGGGTFFADLRRSLSPP-VGHLVAFHG-RALHGGEPIVSGVRYIVAAFLY 339          
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: A0A5B8MSU2_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSU2_9CHLO)

HSP 1 Score: 147 bits (372), Expect = 1.700e-35
Identity = 105/349 (30.09%), Postives = 150/349 (42.98%), Query Frame = 1
Query:   85 RLATDEDRLDDAADALRRAAQLSPLDGDVLYRAGVCAINQGRWSRAVRLWREGLMLSPDNSQLKHEAERYRALAFWLDSPHDSGAECQDIRPFSHPNPLXXXXXXXXXXXXXXXXXXXDRACGLADSLDVTFMAGPGEWVSETRGPPPLSRSECALVIQEAEETAASSRNGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAGEAFGVCAKEDEDEDITGLEEEEEEELGAFVARLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNSGDEYEGGGT-------WFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFLYEH 1110
            +LA DE+R  DA +   +  ++S  DG+  +  G   +N GRWS+    W+ G  ++ ++     E E   A   +  +   + AE +D                             D         D  F+           G P ++  EC  +I EAE  A   +NGW T RHY+VPTTD+    LP  L   N ++RD I P +A+                               + G  +  L+VHDAFV++Y    Q+ LP+HTDQ   S TI LN   EY GGG        +  G G  V+  + G   +F GGE  HGG  ITSGIRYI+A+F++ H
Sbjct:  426 KLAFDEERYSDACELYEKRLEVSKQDGETWHNYGRALVNMGRWSKGYEAWKLGAEVTRESGSPHDELETLMAAHRYF-TYRTTDAEDRDSA-----------------GAEPSEEDEADDRLPRHLRQDAFFL-----------GSPVMTLDECKEIIDEAESHA-REKNGWSTKRHYSVPTTDLPAHALPGCLGILNRSLRDHIFPAIAS-------------------------------KFGEELEDLQVHDAFVIKYSMDGQKFLPIHTDQSHYSATIGLNPTSEYGGGGIIIVEDGGFEEGEGHVVK-VEEGGAFVFRGGELSHGGRNITSGIRYIIALFIFSH 712          
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Match: C1MHS0_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MHS0_MICPC)

HSP 1 Score: 145 bits (366), Expect = 1.410e-34
Identity = 81/194 (41.75%), Postives = 111/194 (57.22%), Query Frame = 1
Query:  523 PPLSRSECALVIQEAEETAASSRNGWGTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAGEAFGVCAKEDEDEDITGLEEEEEEELGAFVARLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVHGGCAITSGIRYILAVFLY 1104
            P LS  EC   I  AE  AA +R GW T+RHYAVPTTD+ V  +   +  +N  MR++++PL+AAA A                            ++ A  + +RVHD FVVRYDA+AQ  LP+H DQ  +SLT++LN GD ++GGGT F  LG    P + GH  +F G +  HGG  +T G+RY++A FL+
Sbjct:  731 PLLSERECLEWIAAAEAHAAKTRGGWTTSRHYAVPTTDLPVHAVEALVPRWNDLMREKLSPLLAAACA----------------------------DVVARASSVRVHDVFVVRYDASAQHHLPIHVDQSAVSLTLALNGGDAFDGGGTTFADLGVTCSP-ETGHAAVFRG-DLRHGGAPVTRGVRYVVAAFLF 894          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9299.16747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7N2_ECTSI9.150e-11251.79Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5L5S3_9PHAE4.810e-8347.86Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A7S4F157_CHRCT6.170e-4233.43Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4BI62_CHRCT5.890e-3833.97Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
F0Y9Z7_AURAN2.840e-3736.00Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
R1G8J0_EMIHU3.890e-3734.91Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]
A0A7S3T9C2_EMIHU5.310e-3747.15Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1DHQ3_EMIHU7.960e-3644.95Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A5B8MSU2_9CHLO1.700e-3530.09Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
C1MHS0_MICPC1.410e-3441.75Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9299contigH-elongata_contig9299:3209..6128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score348.6
Seed ortholog evalue3.6e-93
Seed eggNOG ortholog2880.D7G7N2
EggNOG free text desc.procollagen-lysine 5-dioxygenase activity
EggNOG OGsKOG1971@1,KOG1971@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-22_001730.2
Exons3
Model size1115
Cds size1113
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9299.16747.1prot_H-elongata_contig9299.16747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9299 3211..6128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931327.5184245-CDS-H-elongata_contig9299:3210..41051622931327.5184245-CDS-H-elongata_contig9299:3210..4105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9299 3211..4105 -
1691679791.682836-CDS-H-elongata_contig9299:3210..41051691679791.682836-CDS-H-elongata_contig9299:3210..4105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9299 3211..4105 -
1622931327.532736-CDS-H-elongata_contig9299:5542..56531622931327.532736-CDS-H-elongata_contig9299:5542..5653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9299 5543..5653 -
1691679791.6972015-CDS-H-elongata_contig9299:5542..56531691679791.6972015-CDS-H-elongata_contig9299:5542..5653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9299 5543..5653 -
1622931327.5502453-CDS-H-elongata_contig9299:6021..61281622931327.5502453-CDS-H-elongata_contig9299:6021..6128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9299 6022..6128 -
1691679791.7091742-CDS-H-elongata_contig9299:6021..61281691679791.7091742-CDS-H-elongata_contig9299:6021..6128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9299 6022..6128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9299.16747.1

>prot_H-elongata_contig9299.16747.1 ID=prot_H-elongata_contig9299.16747.1|Name=mRNA_H-elongata_contig9299.16747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=371bp
VEGAAEERDESVAPGVAPIGIEELLESARLATDEDRLDDAADALRRAAQL
SPLDGDVLYRAGVCAINQGRWSRAVRLWREGLMLSPDNSQLKHEAERYRA
LAFWLDSPHDSGAECQDIRPFSHPNPLPPPLPMASTSPGNHRHRYRDRAC
GLADSLDVTFMAGPGEWVSETRGPPPLSRSECALVIQEAEETAASSRNGW
GTARHYAVPTTDIAVRDLPRTLAWFNTAMRDRIAPLVAAAAALGAGEAFG
VCAKEDEDEDITGLEEEEEEELGAFVARLRVHDAFVVRYDAAAQRSLPLH
TDQGELSLTISLNSGDEYEGGGTWFHGLGRAVRPADPGHVVIFPGGEAVH
GGCAITSGIRYILAVFLYEHH
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mRNA from alignment at H-elongata_contig9299:3209..6128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9299.16747.1 ID=mRNA_H-elongata_contig9299.16747.1|Name=mRNA_H-elongata_contig9299.16747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2920bp|location=Sequence derived from alignment at H-elongata_contig9299:3209..6128- (Himanthalia elongata Himel1 dioecious)
GTTGAAGGTGCCGCGGAGGAGCGGGATGAGTCCGTGGCTCCCGGAGTCGC GCCCATTGGGATTGAGGAGCTTCTTGAATCCGCGCGGCTGGCTACCGACG AGGACCGGTGAGCCGCGCCCGAGGCTGAGGCGCGGCGTCGCGTCGAAGGG GTGTAGTTTTTTTGCTGATTTTTGGGTCGGTTGCAGAATCTAATATCTGC TGCCAGCTTTTTGAAAAAACGGCTACATATTTGGCAGCACCGCGGATGGA GGCAACGGCGCGCGAGGTTTTAAGAGTTGGACGATTGCGATAATTCTCGT ACGGAGAGGGCGCTGAAGCTGAACCCGACCCACTCAAAAGCTCTGCAATC ACTGTAGGCAGACGGTGCAACTTATTTTAAGGTAGAGCTTACCTCGCGCC GTCCGACTCGTTAAAACCTTGCCCGTTGCTCGACTCACCTTTTCATTCGA TCGCCTGCGGTTTTCTGTCGCTCAGCCTCGACGACGCCGCGGACGCCCTG CGACGCGCCGCACAGCTGAGCCCCCTCGACGGGGACGTACTTTACCGCGC CGGCGTGTGCGCGATCAACCAGGGCCGATGGAGTAGGTAAGTTCGTATTT TTTTATCAATACTATTATCAAAGCCTATTAATACACTGATGATTATGGTG ATTATTTTTAAAAATTGAGCTCATTCCAACCCTCCGAACATCCACACCTT CGTAGTGCCGTGAGAGGTGCAGTCCAGGCGACCAACTATTATTATTTTAT TTATTTATTTCCTTTTTTTCTTTTCTTTTCTTTTTTGTCCCCAAACCGTA ACTTCCCCGCGCGAATCGAGAAAAGATGGTTGTCTATTCAGAAAGATTCC GTTTGCTTTAGTTTGTACTGACGTTGGTACATGACAAATTAGTACAGCTG TTATATCACATAATTACGTTGGCACATAACTGTGAACGGTATAGCTGTTA CATCTTATACACTCTTCAGCAAACAAAAAAATAATGCAGCTGTTTCATCA CATATTTACTCTGACTCTATGCACCTTCAGCGGTTTAGCATCATGGATTT TTTATGGGGGGGTGGTTATGAAACATCCCCGGCTAGGGTCAGAAAATATA CCACTACTACCTTAGGGCATGAGATGGGCATATAATATATATATATATAT ATATATATATATATACATATATGTTTAATTAGTATCACGGGGAAATTCCA CAAAAACGCAAAAAGCGGGGATGGACTAAAAAATAAATCTGGTGTGAAAA AACGTCAGATCAATCTGAAATTTTCAGGGTATGGCAATTTGGGGGTGGAG ATCACGAATCCCTGATATCGGCATTGCCCGGAGCAGCATTGTCTTAAAAA CAAATCCAACAAAATTAAAACTCAGCTTCAGGGGCGTTCATGATCAAGCC TCTGCCCAGCTAAATTTTTGTCCGAACAACTTTCTAAGTGGATCTACCCC TCCTATATCGACCAGGAGTAATCAATTGCCGAGGTGCCCATGGAAAACAA AGTTCAAGAATTCGACGAAAAAGTAAATGGCGGCAATCCCGAACCGTTCT TTATTTCAGAAACTCGTAGACGACGGTGTTGGGTGCTTCAGAGGGAACCA AAAAAAACGTTTGTTTGTTTTTTTTCAAGTGGGGAGGGCCAAATGACGCT TAGCCGCAAAAGGCGCATAAAGCAGCGAATAAAACAGCTTTTCTCACACC ACGTATACATTATTTAGTAGACAATACGGAATAGTACAGCTGTCACACTA CATACTTCTACTTCGTTTACAATTGTAAATGGCTGCTACATTGCATAATT AAGCATATACTATGGCAGTGAAAATGACACGTTTTCACACGCATACCACA TGCTGCTTATTTTAGTGTGAAGCAGTGAACAGTACATAGGTTCTCACTCA TCACATCCTTACTTTATTATAAATAGTTAATAACCCCTATTAGTTGCTTT AACCGTCTTATTTGCTTCGCTTTGCCGCGCCGTACCCTTGGGGGGGGGGG GCGATTGCGGACGACCAAAAAAGAGCCGTTCGGCTGTGGCGGGAGGGACT GATGCTGTCTCCGGACAACTCACAGCTGAAGCACGAGGCCGAGAGATATC GCGCTCTCGCCTTCTGGCTGGATTCGCCTCACGATTCCGGAGCGGAATGC CAAGACATTCGCCCCTTTTCGCATCCAAATCCCTTGCCTCCGCCGCTGCC GATGGCTTCGACCTCACCGGGCAACCATCGCCACCGGTACCGCGATCGCG CTTGCGGCCTCGCGGACAGCCTTGACGTAACCTTCATGGCCGGACCGGGT GAATGGGTGAGCGAGACGCGGGGGCCACCCCCGCTCTCACGATCCGAGTG CGCCTTGGTCATCCAGGAGGCGGAAGAGACCGCGGCGTCCAGCAGAAACG GCTGGGGCACAGCAAGGCACTACGCCGTGCCCACCACGGACATCGCCGTG CGGGACCTTCCCCGAACGCTCGCGTGGTTCAACACGGCCATGCGCGATCG GATTGCCCCGCTGGTGGCGGCCGCCGCGGCGCTTGGCGCTGGCGAGGCCT TTGGCGTTTGCGCCAAAGAGGACGAAGACGAGGATATTACCGGGCTAGAG GAGGAGGAAGAGGAGGAGCTTGGCGCGTTTGTAGCGCGTTTGCGCGTCCA TGATGCATTCGTCGTTCGGTACGACGCGGCCGCGCAGCGGTCGCTTCCGC TTCATACCGACCAGGGGGAGCTTTCCTTGACGATTTCCCTCAACAGCGGC GACGAGTACGAGGGCGGGGGGACGTGGTTCCATGGGCTGGGGCGTGCCGT TCGGCCTGCGGATCCCGGCCATGTGGTGATTTTCCCGGGGGGTGAGGCGG TTCACGGAGGGTGTGCGATCACGAGCGGGATCCGGTATATTCTGGCGGTG TTTTTGTACGAGCATCATCG
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Coding sequence (CDS) from alignment at H-elongata_contig9299:3209..6128-

>mRNA_H-elongata_contig9299.16747.1 ID=mRNA_H-elongata_contig9299.16747.1|Name=mRNA_H-elongata_contig9299.16747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2226bp|location=Sequence derived from alignment at H-elongata_contig9299:3209..6128- (Himanthalia elongata Himel1 dioecious)
GTTGAAGGTGCCGCGGAGGAGCGGGATGAGTCCGTGGCTCCCGGAGTCGC
GCCCATTGGGATTGAGGAGCTTCTTGAATCCGCGCGGCTGGCTACCGACG
AGGACCGGTTGAAGGTGCCGCGGAGGAGCGGGATGAGTCCGTGGCTCCCG
GAGTCGCGCCCATTGGGATTGAGGAGCTTCTTGAATCCGCGCGGCTGGCT
ACCGACGAGGACCGCCTCGACGACGCCGCGGACGCCCTGCGACGCGCCGC
ACAGCTGAGCCCCCTCGACGGGGACGTACTTTACCGCGCCGGCGTGTGCG
CGATCAACCAGGGCCGATGGAGTAGCCTCGACGACGCCGCGGACGCCCTG
CGACGCGCCGCACAGCTGAGCCCCCTCGACGGGGACGTACTTTACCGCGC
CGGCGTGTGCGCGATCAACCAGGGCCGATGGAGTAGAGCCGTTCGGCTGT
GGCGGGAGGGACTGATGCTGTCTCCGGACAACTCACAGCTGAAGCACGAG
GCCGAGAGATATCGCGCTCTCGCCTTCTGGCTGGATTCGCCTCACGATTC
CGGAGCGGAATGCCAAGACATTCGCCCCTTTTCGCATCCAAATCCCTTGC
CTCCGCCGCTGCCGATGGCTTCGACCTCACCGGGCAACCATCGCCACCGG
TACCGCGATCGCGCTTGCGGCCTCGCGGACAGCCTTGACGTAACCTTCAT
GGCCGGACCGGGTGAATGGGTGAGCGAGACGCGGGGGCCACCCCCGCTCT
CACGATCCGAGTGCGCCTTGGTCATCCAGGAGGCGGAAGAGACCGCGGCG
TCCAGCAGAAACGGCTGGGGCACAGCAAGGCACTACGCCGTGCCCACCAC
GGACATCGCCGTGCGGGACCTTCCCCGAACGCTCGCGTGGTTCAACACGG
CCATGCGCGATCGGATTGCCCCGCTGGTGGCGGCCGCCGCGGCGCTTGGC
GCTGGCGAGGCCTTTGGCGTTTGCGCCAAAGAGGACGAAGACGAGGATAT
TACCGGGCTAGAGGAGGAGGAAGAGGAGGAGCTTGGCGCGTTTGTAGCGC
GTTTGCGCGTCCATGATGCATTCGTCGTTCGGTACGACGCGGCCGCGCAG
CGGTCGCTTCCGCTTCATACCGACCAGGGGGAGCTTTCCTTGACGATTTC
CCTCAACAGCGGCGACGAGTACGAGGGCGGGGGGACGTGGTTCCATGGGC
TGGGGCGTGCCGTTCGGCCTGCGGATCCCGGCCATGTGGTGATTTTCCCG
GGGGGTGAGGCGGTTCACGGAGGGTGTGCGATCACGAGCGGGATCCGGTA
TATTCTGGCGGTGTTTTTGTACGAGCATCATAGCCGTTCGGCTGTGGCGG
GAGGGACTGATGCTGTCTCCGGACAACTCACAGCTGAAGCACGAGGCCGA
GAGATATCGCGCTCTCGCCTTCTGGCTGGATTCGCCTCACGATTCCGGAG
CGGAATGCCAAGACATTCGCCCCTTTTCGCATCCAAATCCCTTGCCTCCG
CCGCTGCCGATGGCTTCGACCTCACCGGGCAACCATCGCCACCGGTACCG
CGATCGCGCTTGCGGCCTCGCGGACAGCCTTGACGTAACCTTCATGGCCG
GACCGGGTGAATGGGTGAGCGAGACGCGGGGGCCACCCCCGCTCTCACGA
TCCGAGTGCGCCTTGGTCATCCAGGAGGCGGAAGAGACCGCGGCGTCCAG
CAGAAACGGCTGGGGCACAGCAAGGCACTACGCCGTGCCCACCACGGACA
TCGCCGTGCGGGACCTTCCCCGAACGCTCGCGTGGTTCAACACGGCCATG
CGCGATCGGATTGCCCCGCTGGTGGCGGCCGCCGCGGCGCTTGGCGCTGG
CGAGGCCTTTGGCGTTTGCGCCAAAGAGGACGAAGACGAGGATATTACCG
GGCTAGAGGAGGAGGAAGAGGAGGAGCTTGGCGCGTTTGTAGCGCGTTTG
CGCGTCCATGATGCATTCGTCGTTCGGTACGACGCGGCCGCGCAGCGGTC
GCTTCCGCTTCATACCGACCAGGGGGAGCTTTCCTTGACGATTTCCCTCA
ACAGCGGCGACGAGTACGAGGGCGGGGGGACGTGGTTCCATGGGCTGGGG
CGTGCCGTTCGGCCTGCGGATCCCGGCCATGTGGTGATTTTCCCGGGGGG
TGAGGCGGTTCACGGAGGGTGTGCGATCACGAGCGGGATCCGGTATATTC
TGGCGGTGTTTTTGTACGAGCATCAT
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