mRNA_H-elongata_contig9297.16745.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9297.16745.1
Unique NamemRNA_H-elongata_contig9297.16745.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9297.16745.1 vs. uniprot
Match: A0A6H5KVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD9_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.670e-30
Identity = 79/125 (63.20%), Postives = 88/125 (70.40%), Query Frame = 1 
Query:    1 QVKSLMARTEELQRKLEEAGESNRIITQAVRLKQDEVDQLSVVNNAINRRLKEKDPAAAIFGEERPEVDMASGGGDYEDGEGNGGSGGD------------TRDIGSVRANAGRGVFYVESRPTQ 339
            QVKSLM RTEELQRKLEEAGESNRIITQAVRLKQDE+DQLSV+N+AINR+LK KDPA   F E+RPEVD              G +G D             RDI +VRA+AGRGVFYVES+P Q
Sbjct:  574 QVKSLMVRTEELQRKLEEAGESNRIITQAVRLKQDELDQLSVINSAINRQLKAKDPALGNF-EDRPEVD--------------GETGADXXXXXXXXXXXXARDIAAVRASAGRGVFYVESKPAQ 683
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BLAST of mRNA_H-elongata_contig9297.16745.1 vs. uniprot
Match: A0A7S2RQ17_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQ17_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.430e-16
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:    1 QVKSLMARTEELQRKLEEAGESNRIITQAVRLKQDEVDQLSVVNNAINRRLKEKDPAAAIFGEERPEVDMASGGGDYEDGEGNGGSGGDTRDIGSVRANAGRGVFYVESRPT 336
            Q+K+L  R EELQRK++E GESNR+ITQA+RLKQDEV++L+V  +A+ +  +E+D A A       +   A G G   DGEG         D  ++RA  GRG FY ES+P+
Sbjct:   35 QIKTLSERCEELQRKVDETGESNRVITQAMRLKQDEVEELTVKLDAMQKMRREQDDAVASA----EQHSGAGGEGPEVDGEG---------DADAIRAAGGRGRFYTESKPS 133
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BLAST of mRNA_H-elongata_contig9297.16745.1 vs. uniprot
Match: A0A482T2T7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2T7_9ARCH)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-7
Identity = 45/108 (41.67%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:   28 EELQRKLEEAGESNRIITQAVRLKQDEVDQLSV-VNNAINRRLKEKDPAAAIFGEERPEVDMASGGGDYEDGEGNGGSGGDTRDIGSVRANAGRGVFYVESRPTQASS 348
            EELQ KL E GESNRIITQAVRLKQ+E++ L V   NA+      +   A + G +    + A  G    D            DI  VR N GRG FYVE++     S
Sbjct:  409 EELQSKLTEMGESNRIITQAVRLKQEEINNLDVKYKNAMQELGSREKELAQLHGNQIQPSENADDGNPRPD------------DIEHVRMNEGRGRFYVEAKSVGGGS 504
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BLAST of mRNA_H-elongata_contig9297.16745.1 vs. uniprot
Match: D8LFA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA2_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.060e-5
Identity = 38/80 (47.50%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:  136 AINRRLKEKDPAAAIFGEERPEVDMASGGGDYEDGEGNGGSGGD------------TRDIGSVRANAGRGVFYVESRPTQ 339
            AINR+LK KDPA   F E+RPEVD              G +G D             RDI +VRA+AGRGVFYVES+P Q
Sbjct:  524 AINRQLKAKDPALGNF-EDRPEVD--------------GETGTDXXXXXXXXXXXXARDIAAVRASAGRGVFYVESKPAQ 588
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9297.16745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KVD9_9PHAE1.670e-3063.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RQ17_9STRA1.430e-1646.43Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A482T2T7_9ARCH1.940e-741.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D8LFA2_ECTSI2.060e-547.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9297contigH-elongata_contig9297:6668..7313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9297.16745.1prot_H-elongata_contig9297.16745.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9297 6668..7298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931327.0799205-CDS-H-elongata_contig9297:6667..68621622931327.0799205-CDS-H-elongata_contig9297:6667..6862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9297 6668..6862 -
1691679791.4629736-CDS-H-elongata_contig9297:6667..68621691679791.4629736-CDS-H-elongata_contig9297:6667..6862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9297 6668..6862 -
1622931327.093665-CDS-H-elongata_contig9297:7157..72981622931327.093665-CDS-H-elongata_contig9297:7157..7298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9297 7158..7298 -
1691679791.4728212-CDS-H-elongata_contig9297:7157..72981691679791.4728212-CDS-H-elongata_contig9297:7157..7298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9297 7158..7298 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931327.1081626-UTR-H-elongata_contig9297:7298..73131622931327.1081626-UTR-H-elongata_contig9297:7298..7313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9297 7299..7313 -
1691679791.482399-UTR-H-elongata_contig9297:7298..73131691679791.482399-UTR-H-elongata_contig9297:7298..7313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9297 7299..7313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9297.16745.1

>prot_H-elongata_contig9297.16745.1 ID=prot_H-elongata_contig9297.16745.1|Name=mRNA_H-elongata_contig9297.16745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MARTEELQRKLEEAGESNRIITQAVRLKQDEVDQLSVVNNAINRRLKEKD
PAAAIFGEERPEVDMASGGGDYEDGEGNGGSGGDTRDIGSVRANAGRGVF
YVESRPTQASS*
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mRNA from alignment at H-elongata_contig9297:6668..7313-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9297.16745.1 ID=mRNA_H-elongata_contig9297.16745.1|Name=mRNA_H-elongata_contig9297.16745.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=646bp|location=Sequence derived from alignment at H-elongata_contig9297:6668..7313- (Himanthalia elongata Himel1 dioecious)
CAGGTTAAATCTCTGATGGCTCGTACTGAAGAGCTGCAGCGGAAGCTGGA
AGAGGCTGGGGAAAGCAACCGAATCATCACACAGGCGGTTAGGTTGAAGC
AGGACGAAGTAGACCAGCTCTCTGTCGTCAACAACGCAATCAACAGGAGG
TTGAAGGTGTGTTTTAAAGAGATAGCGCGCCAGCAGGGCTATTGATACCG
GCTTAAGTTGTGCTTAGGTGGGGAGGGGGGGGGCGTAAAGGCATGATAAA
TTGTACGCTTTCGAATATTTTGTATTAACGGCGCTCGTGCCAAGAACAGG
AGGCACGGCGGCAGGGTTTCTAGTGGCTTAGTGGGTACCCACCTTTCCGG
CCTGGACGTGCACAAGCTAGCATAATGCGATCGTCTAGATTTTACATTTT
GCTACCTCCCCCCAAATAACTGTGACTCTGAGTTCTCCCTCTGTACCACA
GGAGAAAGACCCCGCGGCCGCAATATTTGGCGAGGAGAGACCGGAAGTAG
ATATGGCTAGCGGTGGCGGCGATTATGAAGACGGCGAAGGCAACGGCGGC
TCAGGGGGAGACACTAGAGACATAGGTTCCGTTCGCGCGAATGCTGGGAG
AGGGGTGTTCTATGTAGAATCTAGGCCCACACAGGCGAGCTCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig9297:6668..7313-

>mRNA_H-elongata_contig9297.16745.1 ID=mRNA_H-elongata_contig9297.16745.1|Name=mRNA_H-elongata_contig9297.16745.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig9297:6668..7313- (Himanthalia elongata Himel1 dioecious)
ATGGCTCGTACTGAAGAGCTGCAGCGGAAGCTGGAAGAGGCTGGGGAAAG
CAACCGAATCATCACACAGGCGGTTAGGTTGAAGCAGGACGAAGTAGACC
AGCTCTCTGTCGTCAACAACGCAATCAACAGGAGGTTGAAGATGGCTCGT
ACTGAAGAGCTGCAGCGGAAGCTGGAAGAGGCTGGGGAAAGCAACCGAAT
CATCACACAGGCGGTTAGGTTGAAGCAGGACGAAGTAGACCAGCTCTCTG
TCGTCAACAACGCAATCAACAGGAGGTTGAAGGAGAAAGACCCCGCGGCC
GCAATATTTGGCGAGGAGAGACCGGAAGTAGATATGGCTAGCGGTGGCGG
CGATTATGAAGACGGCGAAGGCAACGGCGGCTCAGGGGGAGACACTAGAG
ACATAGGTTCCGTTCGCGCGAATGCTGGGAGAGGGGTGTTCTATGTAGAA
TCTAGGCCCACACAGGCGAGCTCGTAGGAGAAAGACCCCGCGGCCGCAAT
ATTTGGCGAGGAGAGACCGGAAGTAGATATGGCTAGCGGTGGCGGCGATT
ATGAAGACGGCGAAGGCAACGGCGGCTCAGGGGGAGACACTAGAGACATA
GGTTCCGTTCGCGCGAATGCTGGGAGAGGGGTGTTCTATGTAGAATCTAG
GCCCACACAGGCGAGCTCGTAG
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