mRNA_H-elongata_contig92802.16732.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92802.16732.1
Unique NamemRNA_H-elongata_contig92802.16732.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig92802.16732.1 vs. uniprot
Match: A0A0V0GG49_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GG49_SOLCH)

HSP 1 Score: 72.0 bits (175), Expect = 4.580e-16
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 TKWRSELTHVEKLADELWLGVEMPIEFGASWFSPKCV 111
            TKWRSE T+VEKLADE+WLG EMPIE GASWFSPKCV
Sbjct:    4 TKWRSEPTNVEKLADEVWLGGEMPIEPGASWFSPKCV 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92802.16732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0V0GG49_SOLCH4.580e-1686.49Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92802contigH-elongata_contig92802:743..856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931325.9205134-CDS-H-elongata_contig92802:742..8561622931325.9205134-CDS-H-elongata_contig92802:742..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92802 743..856 +
1691679791.06918-CDS-H-elongata_contig92802:742..8561691679791.06918-CDS-H-elongata_contig92802:742..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92802 743..856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92802.16732.1prot_H-elongata_contig92802.16732.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92802 743..856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92802.16732.1

>prot_H-elongata_contig92802.16732.1 ID=prot_H-elongata_contig92802.16732.1|Name=mRNA_H-elongata_contig92802.16732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
TKWRSELTHVEKLADELWLGVEMPIEFGASWFSPKCV*
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mRNA from alignment at H-elongata_contig92802:743..856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92802.16732.1 ID=mRNA_H-elongata_contig92802.16732.1|Name=mRNA_H-elongata_contig92802.16732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig92802:743..856+ (Himanthalia elongata Himel1 dioecious)
ACTAAGTGGAGGTCCGAACTGACTCATGTTGAAAAATTAGCAGATGAACT
GTGGTTAGGGGTGGAAATGCCAATCGAATTCGGAGCTAGCTGGTTCTCCC
CAAAATGTGTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig92802:743..856+

>mRNA_H-elongata_contig92802.16732.1 ID=mRNA_H-elongata_contig92802.16732.1|Name=mRNA_H-elongata_contig92802.16732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig92802:743..856+ (Himanthalia elongata Himel1 dioecious)
ACTAAGTGGAGGTCCGAACTGACTCATGTTGAAAAATTAGCAGATGAACT
GTGGTTAGGGGTGGAAATGCCAATCGAATTCGGAGCTAGCTGGTTCTCCC
CAAAATGTGTTTAGACTAAGTGGAGGTCCGAACTGACTCATGTTGAAAAA
TTAGCAGATGAACTGTGGTTAGGGGTGGAAATGCCAATCGAATTCGGAGC
TAGCTGGTTCTCCCCAAAATGTGTTTAG
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