mRNA_H-elongata_contig92582.16712.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92582.16712.1
Unique NamemRNA_H-elongata_contig92582.16712.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig92582.16712.1 vs. uniprot
Match: D7FYJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 8.810e-23
Identity = 57/84 (67.86%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 GAELILRAGEAVVRAAGAMAATGLQEQGPEFAALQAAALGAIAALLPGLAASSDG-SNIIAIAEAVVSLVRRCWEGRAGERGGN 249
            G  L++RAGEAVVRAA  MA+ GL  +GPEFAALQAAAL A+  LLPGLAA SDG +N  AIAEAVV+LVR CWE  A E GG+
Sbjct:   19 GRGLLMRAGEAVVRAAATMASAGLHVRGPEFAALQAAALSAVGGLLPGLAAGSDGDNNATAIAEAVVALVRSCWESAASEGGGD 102
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BLAST of mRNA_H-elongata_contig92582.16712.1 vs. uniprot
Match: A0A6H5KJI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.920e-20
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 GAELILRAGEAVVRAAGAMAATGLQEQGPEFAALQAAALGAIAALLPGLAASSDG-SNIIAIAEAVVSLVRRCWE 222
            G  L++RAGEAVVRAAG MA+ GL  +GPEFAALQAAAL A+  LLPGLAA  DG SN  AIAEAVV+LVR CWE
Sbjct:   22 GRGLLMRAGEAVVRAAGTMASAGLHVRGPEFAALQAAALSAVGGLLPGLAAGGDGDSNATAIAEAVVALVRSCWE 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92582.16712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYJ7_ECTSI8.810e-2367.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJI2_9PHAE3.920e-2072.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92582contigH-elongata_contig92582:384..2060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004270.1
Exons3
Model size255
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92582.16712.1prot_H-elongata_contig92582.16712.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92582 384..2060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931323.401362-CDS-H-elongata_contig92582:383..4621622931323.401362-CDS-H-elongata_contig92582:383..462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92582 384..462 -
1691679789.8487208-CDS-H-elongata_contig92582:383..4621691679789.8487208-CDS-H-elongata_contig92582:383..462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92582 384..462 -
1622931323.4137268-CDS-H-elongata_contig92582:1261..13321622931323.4137268-CDS-H-elongata_contig92582:1261..1332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92582 1262..1332 -
1691679789.8575628-CDS-H-elongata_contig92582:1261..13321691679789.8575628-CDS-H-elongata_contig92582:1261..1332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92582 1262..1332 -
1622931323.4274404-CDS-H-elongata_contig92582:1955..20601622931323.4274404-CDS-H-elongata_contig92582:1955..2060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92582 1956..2060 -
1691679789.8687003-CDS-H-elongata_contig92582:1955..20601691679789.8687003-CDS-H-elongata_contig92582:1955..2060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92582 1956..2060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92582.16712.1

>prot_H-elongata_contig92582.16712.1 ID=prot_H-elongata_contig92582.16712.1|Name=mRNA_H-elongata_contig92582.16712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
GAELILRAGEAVVRAAGAMAATGLQEQGPEFAALQAAALGAIAALLPGLA
ASSDGSNIIAIAEAVVSLVRRCWEGRAGERGGNVV
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mRNA from alignment at H-elongata_contig92582:384..2060-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92582.16712.1 ID=mRNA_H-elongata_contig92582.16712.1|Name=mRNA_H-elongata_contig92582.16712.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1677bp|location=Sequence derived from alignment at H-elongata_contig92582:384..2060- (Himanthalia elongata Himel1 dioecious)
GGCGCCGAGTTGATTCTTCGGGCCGGCGAAGCGGTGGTTCGAGCGGCAGG
GGCGATGGCGGCGACGGGGCTCCAAGAGCAGGGACCGGAGTTCGCGGCGC
TTCAGGTGTGCCGGCAAAGAAGTTGTCGGGGCGAGGATAGGAGACGGGAG
GGGATAGAAGTATTGACACGTAATTTCATCGATTCGCGTGCTAGGAATGT
TGCGCTTGAGTTTTGAATATAAGGATGGCGTTTTTTTAACGGGGCCCTGG
GGGAACATCTGTTTTACACACCGTATACAGGAGGAAAATGAAGTTGAGTA
TAGCTAGCACGCGATAGATGAAACGGGGTGCATTTTTCTTCAATTCATTT
TTTTTTTTTGATAGGGAGAATGATCATTGCTCGTACACACCTCAAGCCCC
GGGTCTGTCTGATGATTTCCACCTCAAATATCACTGAGCGCTCAGTCAAC
AAGCCTTGGTGGATAGTTGTCGCTTGTTTTGATGTTATATCATTTGATAT
GGTTTGATGTCGTTTGGTGGGGGGTGGGAGATGCGATGTTTCAGTTACGC
CCTTCATTCATTCACCACGTTTAACACTGCTGTTGTCTCTTTTACTTTCC
CGCGCTCCACATTTTCCTTGGTTGCTTTTGTGGTTTAGCTTTTTGTGTGT
TTTGTCCTTTTTTGTCCTTTTTTTCTCCTTCCTTTAATTATAAAACATTG
ATACTAATATGTATTTTGTTCTCTGCAGGCGGCCGCTCTGGGCGCAATCG
CGGCGTTGCTTCCCGGGCTGGCGGCTAGCAGCGACGGTAGCAACATCATG
TAAGGCTGGACCGCAGCAGTCTGGCGAATGTGCTCTTTCCCCCACCCCTC
CTCGGGGATCTTAAGAAGATATGATATAAGGGCCTGTGTCTCTGCCTCTT
GGACAAAGCAGCAGGCCACAGCAAAGCAATACACGTTTTTTCAGTATATA
TACCCGTTTCAGCACCGTAGTTACCAAAAGGTACATCAATGAAAACAAGG
TAGCCTTGAGACAGATGTCGTCATGCCCGGCGCGCGACTCACGCTGGCGA
TCGAAACATTTTGATTGGTCTATTGTTTCGATTGGTCGAGACATCCATTG
TGCGGCACCATTGACAACCTCCTGTCGGGGGGGCGTCAGAGCTTCAGCGG
AACAGCTAGACACCGTATTTAAAGTAGGACGGGAAAAAAAAATGGCGCGA
AAGAAGGTGACGGTAACAGTAACGGTGACGGTAACAGTAACGGTGACGGT
AACAGTAACGGTGACGGTAACAGTAACGATAACGGTGACGGTAACAGTAA
CGATAACGGTGACGGTAACAGTAACGGTAACGATTACGGTGACGGTAACG
ATAACGGTGACGGTAACAGTAACGATAACGGTAACGGTGGAGCGAAATGA
AAAAAAAGAGGTCCACCACAACGTGCGTACGAACGAACGCACTCAAGTAT
ATTTTATTAGAGCCCAAAATTCCATGTGTCTTTGAATACCCCGCCCGTCC
CCGTCCCCGCCCCCGCCCCCCCCTGCTTTACTTTCCACGCACCCCAATCG
GACTGGCGGACCGGCGAACCTGCTCACATATGGTTAATATTGCCCCAGCG
CGATCGCGGAAGCGGTGGTGTCTTTGGTCCGGCGTTGCTGGGAGGGCAGG
GCGGGCGAGAGGGGTGGAAACGTGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig92582:384..2060-

>mRNA_H-elongata_contig92582.16712.1 ID=mRNA_H-elongata_contig92582.16712.1|Name=mRNA_H-elongata_contig92582.16712.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig92582:384..2060- (Himanthalia elongata Himel1 dioecious)
GGCGCCGAGTTGATTCTTCGGGCCGGCGAAGCGGTGGTTCGAGCGGCAGG
GGCGATGGCGGCGACGGGGCTCCAAGAGCAGGGACCGGAGTTCGCGGCGC
TTCAGGGCGCCGAGTTGATTCTTCGGGCCGGCGAAGCGGTGGTTCGAGCG
GCAGGGGCGATGGCGGCGACGGGGCTCCAAGAGCAGGGACCGGAGTTCGC
GGCGCTTCAGGCGGCCGCTCTGGGCGCAATCGCGGCGTTGCTTCCCGGGC
TGGCGGCTAGCAGCGACGGTAGCAACATCATGCGGCCGCTCTGGGCGCAA
TCGCGGCGTTGCTTCCCGGGCTGGCGGCTAGCAGCGACGGTAGCAACATC
ATCGCGATCGCGGAAGCGGTGGTGTCTTTGGTCCGGCGTTGCTGGGAGGG
CAGGGCGGGCGAGAGGGGTGGAAACGTGGTACGCGATCGCGGAAGCGGTG
GTGTCTTTGGTCCGGCGTTGCTGGGAGGGCAGGGCGGGCGAGAGGGGTGG
AAACGTGGTA
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