mRNA_H-elongata_contig92571.16710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92571.16710.1
Unique NamemRNA_H-elongata_contig92571.16710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: D7G490_ECTSI (Dhm exonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G490_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.390e-27
Identity = 48/58 (82.76%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    7 GLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 180
            GL +HT+P+DNLYLDMNG+IHMCTH NDDEF+ELNEKEMFRRIFIFTDR++KL+RPRR
Sbjct:  154 GLNEHTAPIDNLYLDMNGVIHMCTHHNDDEFIELNEKEMFRRIFIFTDRMFKLVRPRR 211
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BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A835ZEW4_9STRA (5'-3' exoribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.860e-20
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    7 GLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 180
            G    T+P+DN YLDMNGIIHM TH N D F+ELNE+EMF+RIFI+TDRLYKL+ P R
Sbjct:   87 GFNTETAPIDNFYLDMNGIIHMATHNNADSFIELNEEEMFKRIFIYTDRLYKLVAPTR 144
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BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A7S2LHT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHT5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.730e-18
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   31 VDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRP 174
            VDN YLDMNGIIH CTH N DE V LNE EMF++IF++ DRLYKL++P
Sbjct:   69 VDNFYLDMNGIIHPCTHGNSDELVVLNETEMFKKIFLYVDRLYKLVQP 116
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BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: W7TB93_9STRA (5-3 exoribonuclease 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB93_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.530e-18
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 GTGLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 180
            G  L   T+ V+N YLDMNGIIHMCTHAN +E + L+E++MF+RIF +TDRLYK++ P R
Sbjct:  119 GETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTR 178
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BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A7R9WBB9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WBB9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.530e-17
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   31 VDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 180
            VDN YLDMNGIIH CTH N +EFV L+E+EMF++IF + DRLY+++RPRR
Sbjct:   63 VDNFYLDMNGIIHPCTHGNREEFVVLDEREMFKKIFGYVDRLYRIVRPRR 112
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BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A4D9CYF6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYF6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.320e-17
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 GTGLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 180
            G  L   T+ V+N YLDMNGIIHMCTHAN +E + L+E++MF+RIF +TDRLYK++ P R
Sbjct:   61 GETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTR 120
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BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A7S2AHT5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AHT5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.830e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    7 GLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 180
            GL   +  VDNLYLDMNGIIHMCTH N D  V L EKEM +RIF +TDR+YK+++P++
Sbjct:   87 GLGAQSQDVDNLYLDMNGIIHMCTHGNADSIVLLQEKEMLQRIFTYTDRIYKIVQPKK 144
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BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A0G4EF62_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EF62_VITBC)

HSP 1 Score: 79.3 bits (194), Expect = 8.310e-16
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   31 VDNLYLDMNGIIHMCTHAN-DDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 180
            VD  YLDMNGIIHMCTHAN D +FVE +E+EMF RIF + DRLYK+IRPRR
Sbjct:   30 VDTFYLDMNGIIHMCTHANVDADFVEHDEEEMFHRIFAYIDRLYKIIRPRR 80
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BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A5J4YW09_PORPP (5'-3' exoribonuclease n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW09_PORPP)

HSP 1 Score: 78.2 bits (191), Expect = 2.120e-15
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   34 DNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 180
            DN YLDMNGIIH CTH NDDE V +N+++MF+ +F +TDRLYK++RPR+
Sbjct:   28 DNFYLDMNGIIHQCTHPNDDEIVVMNQEQMFQAMFDYTDRLYKIVRPRK 76
[Close]
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A6U6L5K8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6L5K8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.890e-15
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   31 VDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 180
            VDN YLDMNGIIH CTH N +EF+ L+E EMF++IF + DRLY+++RPRR
Sbjct:   26 VDNFYLDMNGIIHPCTHGNREEFIVLDEAEMFKKIFGYVDRLYRIVRPRR 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G490_ECTSI1.390e-2782.76Dhm exonuclease n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A835ZEW4_9STRA3.860e-2068.975'-3' exoribonuclease n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2LHT5_9STRA7.730e-1870.83Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
W7TB93_9STRA9.530e-1860.005-3 exoribonuclease 1 n=1 Tax=Nannochloropsis gadi... [more]
A0A7R9WBB9_9STRA1.530e-1768.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A4D9CYF6_9STRA3.320e-1760.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2AHT5_9STRA6.830e-1762.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0G4EF62_VITBC8.310e-1674.51Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A5J4YW09_PORPP2.120e-1565.315'-3' exoribonuclease n=1 Tax=Porphyridium purpure... [more]
A0A6U6L5K8_9STRA2.890e-1566.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92571contigH-elongata_contig92571:123..308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue5.6e-23
Seed eggNOG ortholog2880.D7G490
Preferred nameXRN1
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
GOsGO:0000003,GO:0000184,GO:0000287,GO:0000291,GO:0000723,GO:0000932,GO:0000956,GO:0001700,GO:0002009,GO:0002151,GO:0002165,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004534,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007049,GO:0007089,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007391,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008334,GO:0008340,GO:0008409,GO:0009056,GO:0009057,GO:0009611,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010603,GO:0010604,GO:0010605,GO:0010607,GO:0010608,GO:0010628,GO:0010629,GO:0010639,GO:0010941,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016075,GO:0016246,GO:0016331,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019953,GO:0022414,GO:0022613,GO:0030425,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031333,GO:0031334,GO:0032126,GO:0032200,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034248,GO:0034249,GO:0034428,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035107,GO:0035114,GO:0035120,GO:0035194,GO:0035220,GO:0035239,GO:0035295,GO:0035770,GO:0036464,GO:0036477,GO:0040008,GO:0040029,GO:0042060,GO:0042254,GO:0042592,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043066,GO:0043067,GO:0043069,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043487,GO:0043488,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044853,GO:0045121,GO:0045202,GO:0045570,GO:0045572,GO:0045787,GO:0045893,GO:0045927,GO:0045931,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046528,GO:0046529,GO:0046620,GO:0046622,GO:0046700,GO:0046872,GO:0048232,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048598,GO:0048609,GO:0048638,GO:0048639,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051321,GO:0051704,GO:0051726,GO:0051880,GO:0060249,GO:0060255,GO:0060260,GO:0060261,GO:0060429,GO:0060548,GO:0060562,GO:0061013,GO:0061014,GO:0061157,GO:0065007,GO:0065008,GO:0070034,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071044,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0090512,GO:0097159,GO:0097447,GO:0097458,GO:0098589,GO:0098590,GO:0098805,GO:0098857,GO:0120025,GO:0120038,GO:0140098,GO:1900087,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902115,GO:1902116,GO:1902680,GO:1902806,GO:1902808,GO:1903311,GO:1903313,GO:1903506,GO:1903508,GO:1904356,GO:1904357,GO:1990904,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2000278,GO:2000279,GO:2001141,GO:2001251
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
Ec32 ortholog descriptiondhm exonuclease
Ec32 orthologEc-02_001760.1
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931323.2164552-CDS-H-elongata_contig92571:122..3081622931323.2164552-CDS-H-elongata_contig92571:122..308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92571 123..308 +
1691679789.7998369-CDS-H-elongata_contig92571:122..3081691679789.7998369-CDS-H-elongata_contig92571:122..308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92571 123..308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92571.16710.1prot_H-elongata_contig92571.16710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92571 123..308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92571.16710.1

>prot_H-elongata_contig92571.16710.1 ID=prot_H-elongata_contig92571.16710.1|Name=mRNA_H-elongata_contig92571.16710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
GTGLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTD
RLYKLIRPRRFV
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mRNA from alignment at H-elongata_contig92571:123..308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92571.16710.1 ID=mRNA_H-elongata_contig92571.16710.1|Name=mRNA_H-elongata_contig92571.16710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig92571:123..308+ (Himanthalia elongata Himel1 dioecious)
GGAACTGGGCTCGAGAAGCACACCTCCCCCGTGGACAACCTTTACCTGGA
CATGAACGGCATCATCCACATGTGCACCCACGCCAACGACGACGAGTTCG
TGGAGCTGAACGAGAAGGAGATGTTCCGAAGGATTTTTATATTCACCGAC
CGGCTCTACAAGCTCATCAGGCCGCGGAGGTTTGTA
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Coding sequence (CDS) from alignment at H-elongata_contig92571:123..308+

>mRNA_H-elongata_contig92571.16710.1 ID=mRNA_H-elongata_contig92571.16710.1|Name=mRNA_H-elongata_contig92571.16710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig92571:123..308+ (Himanthalia elongata Himel1 dioecious)
GGAACTGGGCTCGAGAAGCACACCTCCCCCGTGGACAACCTTTACCTGGA
CATGAACGGCATCATCCACATGTGCACCCACGCCAACGACGACGAGTTCG
TGGAGCTGAACGAGAAGGAGATGTTCCGAAGGATTTTTATATTCACCGAC
CGGCTCTACAAGCTCATCAGGCCGCGGAGGTTTGTAGGAACTGGGCTCGA
GAAGCACACCTCCCCCGTGGACAACCTTTACCTGGACATGAACGGCATCA
TCCACATGTGCACCCACGCCAACGACGACGAGTTCGTGGAGCTGAACGAG
AAGGAGATGTTCCGAAGGATTTTTATATTCACCGACCGGCTCTACAAGCT
CATCAGGCCGCGGAGGTTTGTA
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