mRNA_H-elongata_contig92537.16706.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92537.16706.1
Unique NamemRNA_H-elongata_contig92537.16706.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 147 bits (370), Expect = 2.100e-39
Identity = 84/180 (46.67%), Postives = 114/180 (63.33%), Query Frame = 1 
Query:    4 VVIQQKRSDGETEGMSLHFSQGIVDAT---LSEVN-RPSIIEDGYIIFGR--------------TGSGTKRQAKVMT----DKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYFEVRCRDSPNHGTVRL 477
            V + Q+ +D  TEG+S+H+ + +V+     LS ++ R   ++D ++IFG                G G  R +K  T    + ++AP KRHK+DPN PRGYISAFNFFVKD+RP+YVQ+  NAQG SL+HNNEINK+LG+ WK ATE+EKK YEEK+T DK RY +      P  G  R+
Sbjct:  141 VAVHQRCADEATEGLSVHYFRTMVEDRHLGLSSIHDRQDNVQDAFVIFGTHSRHPVRFRQHTGALGHGRSRYSKPQTRVAYESATAP-KRHKKDPNRPRGYISAFNFFVKDKRPTYVQSRPNAQGHSLEHNNEINKMLGKVWKTATEQEKKTYEEKATADKVRYLKEMSAYRPPEGYERI 319
[Close]
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: D7G5V4_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.730e-27
Identity = 66/164 (40.24%), Postives = 97/164 (59.15%), Query Frame = 1 
Query:    4 VVIQQKRSDGETEGMSLHFSQ-----GIVDATLSEVNRPSIIEDGYIIFGRTGSGTKR----------------QAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYF 432
            V + Q+ SDG T+G++   S      G+V     E+   S+ +D ++IF    SG+ R                +A+ M  K ++P +R ++DPN PRGY+SAFNFFVKD+R +YV++   AQG S  +NNE+NK+LG+AWK  T EEK  Y+ +S +DK RY 
Sbjct:  139 VSVHQRSSDGVTDGVAFQHSLVNGDGGLVSTAKEEMYHNSV-QDAFVIFNTHPSGSTRFVEHSQALTSGHTRSSEARRMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRD---AQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYL 298
[Close]
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: A0A6H5JSJ1_9PHAE (HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 8.420e-27
Identity = 68/178 (38.20%), Postives = 103/178 (57.87%), Query Frame = 1 
Query:    4 VVIQQKRSDGETEGMSLHFS----QGIVDATLSEVNRPSIIEDGYIIFGRTGSGTKR---QAKVMTD-------------KSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYFEVRCRDSPNHGTVRL 477
            V + Q+ +DG T+G++   S     G + +T  E    S ++D ++IF    SG+ R    ++ +T              K ++P KR ++DPN PRGY+SAFNFFVKD+R +YV++   AQG S  +NNE+NK+LG+AWK  T EEK  Y+ +S +DK RY +     +P  G  R+
Sbjct:  202 VSVHQRSADGATDGVAFQHSLVSGDGGLVSTAKEEMYHSSVQDAFVIFNTHPSGSTRFVEHSRALTSGHTHSSEPRRTVPKKTSPPKRKRKDPNRPRGYVSAFNFFVKDKRSAYVRD---AQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLKEVAEYTPPVGGARI 376
[Close]
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: A0A167JA28_PHYB8 (HMG box domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167JA28_PHYB8)

HSP 1 Score: 60.1 bits (144), Expect = 7.210e-9
Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:  139 RTGSGTKRQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYFEVRCRDSPNHG 465
            +  S TKR +KV+ D      +R K+DP+ P+  +SA+ FF +D+R    +N  +A         +I KILG  WK  T+ +KK Y +K+ +DK+RY + +   +  H 
Sbjct:    3 KESSKTKRTSKVVDD---GKKRRTKKDPSAPKRGLSAYMFFSQDQRHVVKENNPDASF------GQIGKILGERWKKMTDADKKPYNQKAELDKKRYEDEKAIAAEKHS 102
[Close]
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: A0A5C5G4Q3_9BASI (High mobility group box domain-containing protein n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G4Q3_9BASI)

HSP 1 Score: 53.1 bits (126), Expect = 3.610e-6
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:  160 RQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRY 429
            +++K  + K++A +K  K+DPN P+  +SA+  F +D R    +   +          EI K+LG  WK ATE +KK YEEK+  DK RY
Sbjct:    3 KESKTRSGKATAAAK-PKKDPNAPKRPLSAYMHFSQDMRSVVKEENPDVTF------GEIGKLLGVKWKEATENDKKPYEEKAKADKERY 85
[Close]
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: W7APU7_PLAVN (High mobility group protein B2, putative n=8 Tax=Plasmodium TaxID=5820 RepID=W7APU7_PLAVN)

HSP 1 Score: 49.7 bits (117), Expect = 5.590e-5
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  154 TKRQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRY 429
            TK Q KV+  ++    K+ K+DP  P+  +SA+ F+VKD+R   +Q          Q    + K++G AW   T  +K  YE+K+ +DK RY
Sbjct:    3 TKTQKKVIKKQN----KKKKKDPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQ----VGKLIGEAWGQLTPAQKAPYEKKAELDKVRY 86
[Close]
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: Q7R8Z3_PLAYO (High mobility group protein n=5 Tax=Plasmodium (Vinckeia) TaxID=418101 RepID=Q7R8Z3_PLAYO)

HSP 1 Score: 49.7 bits (117), Expect = 9.820e-5
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  154 TKRQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRY 429
            TK Q KV+  ++    K+ K+DP  P+  +SA+ F+VKD+R   +Q          Q    + K++G AW   T  +K  YE+K+ +DK RY
Sbjct:   31 TKTQKKVIKKQN----KKKKKDPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQ----VGKLIGEAWGQLTPAQKAPYEKKAELDKVRY 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2Z4MTA2_SACJA2.100e-3946.67HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
D7G5V4_ECTSI1.730e-2740.24HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JSJ1_9PHAE8.420e-2738.20HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A167JA28_PHYB87.210e-933.94HMG box domain-containing protein n=1 Tax=Phycomyc... [more]
A0A5C5G4Q3_9BASI3.610e-637.78High mobility group box domain-containing protein ... [more]
W7APU7_PLAVN5.590e-534.78High mobility group protein B2, putative n=8 Tax=P... [more]
Q7R8Z3_PLAYO9.820e-534.78High mobility group protein n=5 Tax=Plasmodium (Vi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92537contigH-elongata_contig92537:6..1067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.5
Seed ortholog evalue8.5e-07
Seed eggNOG ortholog936053.I1C3L6
Preferred nameNHP6
GOsGO:0000228,GO:0000785,GO:0000790,GO:0001192,GO:0001195,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006351,GO:0006352,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006383,GO:0006384,GO:0006385,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031497,GO:0031974,GO:0031981,GO:0032774,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0070898,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.high mobility group
EggNOG OGs1GXAT@112252,3A6QT@33154,3P5CR@4751,COG5648@1,KOG0381@2759
COG Functional cat.K
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.9044356-CDS-H-elongata_contig92537:5..1761622931322.9044356-CDS-H-elongata_contig92537:5..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92537 6..176 -
1691679789.6730819-CDS-H-elongata_contig92537:5..1761691679789.6730819-CDS-H-elongata_contig92537:5..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92537 6..176 -
1622931322.9253492-CDS-H-elongata_contig92537:758..10671622931322.9253492-CDS-H-elongata_contig92537:758..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92537 759..1067 -
1691679789.6877975-CDS-H-elongata_contig92537:758..10671691679789.6877975-CDS-H-elongata_contig92537:758..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92537 759..1067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92537.16706.1prot_H-elongata_contig92537.16706.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92537 6..1067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92537.16706.1

>prot_H-elongata_contig92537.16706.1 ID=prot_H-elongata_contig92537.16706.1|Name=mRNA_H-elongata_contig92537.16706.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
QVVIQQKRSDGETEGMSLHFSQGIVDATLSEVNRPSIIEDGYIIFGRTGS
GTKRQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQ
NAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYFEVRCRD
SPNHGTVRL*
back to top

mRNA from alignment at H-elongata_contig92537:6..1067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92537.16706.1 ID=mRNA_H-elongata_contig92537.16706.1|Name=mRNA_H-elongata_contig92537.16706.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1062bp|location=Sequence derived from alignment at H-elongata_contig92537:6..1067- (Himanthalia elongata Himel1 dioecious)
CAGGTGGTTATACAGCAAAAGCGCAGCGATGGTGAAACAGAGGGCATGTC
TCTTCATTTTTCCCAGGGCATCGTGGATGCCACACTTTCAGAGGTAAACC
GCCCCTCAATCATCGAAGATGGCTATATAATATTTGGTCGTACGGGCTCG
GGCACCAAGCGCCAAGCCAAGGTGATGACCGATAAGAGTTCCGCTCCGTC
CAAACGACACAAAAGAGACCCGAACCACCCGAGGGGCTACATAAGCGCCT
TCAACTTCTTCGTCAAAGATAGGCGACCAAGCTACGTCCAGAATGGGCAA
AACGCTCAGGTGATCGCTCCCTCGATGATCAACAGCGTTGCCCATTCTGA
AGGATTGTACAAAAGAAGACTCAATCGCGTAGAGTTTATGATCGTAAGCG
GGTTCGACAAGTAGTATATTGGTGCATGGTCCGCGAGCGCACTTGAGACG
ACCAGGCCAGTAACCTCATGTGGTCGGTGCCCAGAGGACACTAAGAAAGG
GCAATACTTTCCCCTAGTAAGTCCCCGAGGAACATATGATACCGTTACCC
ATACCCATACCACCAGCGAAAAATAATGAAGTAACATACGTGAAAAAATA
ACGATGAGAGAGCACATAGTAGTCCCTTGGAGGCGTACCGTAGCCCATCC
AAGTTATTATAGTGAGATGTGGCGGACACGATTTCGTCTCCACTTTGTTC
AACGCTCACAGACCTCAAGTGCCTGGTGCTTGTCTCTTACCTGTATTTAT
CTCGTATAAGTTGGTGGTTCTCCAATGATATAAGAAGCCGACTTTGCGGA
TGGGGGCTTGACGCAGAAGGTGGCCTACACTGCTTAGCTTTCTGTCGTGT
TTGGGATGAATTTCGTATTTCGTGCCCCTTGCCCGAGGCAGGGCCGTTCG
CTGCAGCACAACAACGAAATCAACAAAATTCTCGGAAGGGCGTGGAAGAA
CGCGACGGAAGAAGAAAAGAAGATTTATGAAGAGAAATCGACGATAGACA
AGCGCCGCTACTTTGAGGTTCGTTGTAGAGACTCTCCCAACCACGGTACC
GTACGATTGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig92537:6..1067-

>mRNA_H-elongata_contig92537.16706.1 ID=mRNA_H-elongata_contig92537.16706.1|Name=mRNA_H-elongata_contig92537.16706.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig92537:6..1067- (Himanthalia elongata Himel1 dioecious)
CAGGTGGTTATACAGCAAAAGCGCAGCGATGGTGAAACAGAGGGCATGTC
TCTTCATTTTTCCCAGGGCATCGTGGATGCCACACTTTCAGAGGTAAACC
GCCCCTCAATCATCGAAGATGGCTATATAATATTTGGTCGTACGGGCTCG
GGCACCAAGCGCCAAGCCAAGGTGATGACCGATAAGAGTTCCGCTCCGTC
CAAACGACACAAAAGAGACCCGAACCACCCGAGGGGCTACATAAGCGCCT
TCAACTTCTTCGTCAAAGATAGGCGACCAAGCTACGTCCAGAATGGGCAA
AACGCTCAGCAGGTGGTTATACAGCAAAAGCGCAGCGATGGTGAAACAGA
GGGCATGTCTCTTCATTTTTCCCAGGGCATCGTGGATGCCACACTTTCAG
AGGTAAACCGCCCCTCAATCATCGAAGATGGCTATATAATATTTGGTCGT
ACGGGCTCGGGCACCAAGCGCCAAGCCAAGGTGATGACCGATAAGAGTTC
CGCTCCGTCCAAACGACACAAAAGAGACCCGAACCACCCGAGGGGCTACA
TAAGCGCCTTCAACTTCTTCGTCAAAGATAGGCGACCAAGCTACGTCCAG
AATGGGCAAAACGCTCAGGGCCGTTCGCTGCAGCACAACAACGAAATCAA
CAAAATTCTCGGAAGGGCGTGGAAGAACGCGACGGAAGAAGAAAAGAAGA
TTTATGAAGAGAAATCGACGATAGACAAGCGCCGCTACTTTGAGGTTCGT
TGTAGAGACTCTCCCAACCACGGTACCGTACGATTGTAAGGCCGTTCGCT
GCAGCACAACAACGAAATCAACAAAATTCTCGGAAGGGCGTGGAAGAACG
CGACGGAAGAAGAAAAGAAGATTTATGAAGAGAAATCGACGATAGACAAG
CGCCGCTACTTTGAGGTTCGTTGTAGAGACTCTCCCAACCACGGTACCGT
ACGATTGTAA
back to top