mRNA_H-elongata_contig92450.16699.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92450.16699.1
Unique NamemRNA_H-elongata_contig92450.16699.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92450.16699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92450contigH-elongata_contig92450:2..1091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size773
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92450.16699.1prot_H-elongata_contig92450.16699.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92450 46..992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.4032774-UTR-H-elongata_contig92450:1..451622931322.4032774-UTR-H-elongata_contig92450:1..45Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92450 2..45 -
1691679789.4089046-UTR-H-elongata_contig92450:1..451691679789.4089046-UTR-H-elongata_contig92450:1..45Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92450 2..45 -
1622931322.4539053-UTR-H-elongata_contig92450:992..10911622931322.4539053-UTR-H-elongata_contig92450:992..1091Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92450 993..1091 -
1691679789.4521523-UTR-H-elongata_contig92450:992..10911691679789.4521523-UTR-H-elongata_contig92450:992..1091Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92450 993..1091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.4224813-CDS-H-elongata_contig92450:45..6571622931322.4224813-CDS-H-elongata_contig92450:45..657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92450 46..657 -
1691679789.431102-CDS-H-elongata_contig92450:45..6571691679789.431102-CDS-H-elongata_contig92450:45..657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92450 46..657 -
1622931322.436923-CDS-H-elongata_contig92450:974..9921622931322.436923-CDS-H-elongata_contig92450:974..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92450 975..992 -
1691679789.4424007-CDS-H-elongata_contig92450:974..9921691679789.4424007-CDS-H-elongata_contig92450:974..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92450 975..992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92450.16699.1

>prot_H-elongata_contig92450.16699.1 ID=prot_H-elongata_contig92450.16699.1|Name=mRNA_H-elongata_contig92450.16699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
MAVAEEGQQMKRPATRCIDPSAMVSSRGMGPHSVRPKTIRESREPRSNSV
GVGGSSLPPGTARGSFAKHDQFSSSGGSGGGVTGSRRNGRDLDSRDDPRS
ISGISFGCGPGREHERTGTRMRGDGDRYLEEPRSRRADEVDMYPRGGSSS
GGGSLTWRDGRPIESPRGGSKRGRSVDFDRGLDNRDERQRSRDSREKKKS
KTKKRKHQN*
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mRNA from alignment at H-elongata_contig92450:2..1091-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92450.16699.1 ID=mRNA_H-elongata_contig92450.16699.1|Name=mRNA_H-elongata_contig92450.16699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1090bp|location=Sequence derived from alignment at H-elongata_contig92450:2..1091- (Himanthalia elongata Himel1 dioecious)
ACCGGGGGAACAGGAGGAAGAAGTGCCAGAGAGGGGAGGGGGTGGGACGG
CGAACGCGAGGTGGAAGTTAGAATCAGGGACAAGAACGGGTCCGCGAGGA
TGGCGGTGGCCGAAGAGGTGATGAGGTCGGCCATCCTTTGATGGCATGCC
TTGTATTATTTTGTCTACAGCTAGTCACGGACTTTGAACACCCCGCTTGG
CTAGCTGAAGGCGACACCTGCAAATATGCTGTCCATGTCTTTGGCGTAGC
TGTTACTGTCATGTCTTTCACTAACCCTAACCCTAACCCTAACATTAACC
CTAATACTCTTGTCATACTTCACGGATTCGTTTTGTTGATATGTCGTCCA
CTTCGACGTGTAACATAGCCTCCCCCCCCATCTCAATTTTAAGCTAACCT
CGTTTTTACCGACGCTGCCGATTGTAATCCACAGGGACAGCAAATGAAAC
GCCCGGCAACTCGCTGCATCGACCCCTCGGCAATGGTGTCCTCGCGGGGG
ATGGGACCGCACAGCGTCCGCCCCAAGACGATACGCGAATCCCGCGAGCC
ACGCTCTAATAGCGTCGGCGTCGGCGGGAGCAGTCTGCCGCCGGGTACGG
CGCGCGGGTCCTTCGCGAAGCACGATCAGTTCTCTTCGAGCGGCGGCAGT
GGAGGCGGCGTCACGGGGAGCAGACGCAACGGGCGCGACCTCGATAGCCG
TGACGATCCCCGCAGCATCAGTGGCATCAGTTTTGGTTGTGGTCCGGGGC
GAGAGCATGAGAGGACGGGAACGAGAATGAGGGGAGACGGTGATCGTTAC
CTGGAAGAGCCCAGATCGCGGCGGGCGGACGAAGTTGACATGTACCCTCG
CGGCGGGAGTTCCAGTGGTGGAGGCAGTCTGACGTGGCGAGATGGGAGGC
CGATAGAATCTCCCCGCGGTGGGAGCAAGAGGGGTCGGAGCGTTGATTTC
GATCGGGGCTTGGATAATCGGGACGAAAGGCAGCGCAGCCGCGACAGCCG
AGAAAAAAAAAAGAGTAAGACTAAAAAAAGGAAGCACCAAAACTAGTCAC
CGATATTAGGACCACTCTGTTTTAGTGCTTCCTCTATTTA
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Coding sequence (CDS) from alignment at H-elongata_contig92450:2..1091-

>mRNA_H-elongata_contig92450.16699.1 ID=mRNA_H-elongata_contig92450.16699.1|Name=mRNA_H-elongata_contig92450.16699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig92450:2..1091- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGGCCGAAGAGATGGCGGTGGCCGAAGAGGGACAGCAAATGAA
ACGCCCGGCAACTCGCTGCATCGACCCCTCGGCAATGGTGTCCTCGCGGG
GGATGGGACCGCACAGCGTCCGCCCCAAGACGATACGCGAATCCCGCGAG
CCACGCTCTAATAGCGTCGGCGTCGGCGGGAGCAGTCTGCCGCCGGGTAC
GGCGCGCGGGTCCTTCGCGAAGCACGATCAGTTCTCTTCGAGCGGCGGCA
GTGGAGGCGGCGTCACGGGGAGCAGACGCAACGGGCGCGACCTCGATAGC
CGTGACGATCCCCGCAGCATCAGTGGCATCAGTTTTGGTTGTGGTCCGGG
GCGAGAGCATGAGAGGACGGGAACGAGAATGAGGGGAGACGGTGATCGTT
ACCTGGAAGAGCCCAGATCGCGGCGGGCGGACGAAGTTGACATGTACCCT
CGCGGCGGGAGTTCCAGTGGTGGAGGCAGTCTGACGTGGCGAGATGGGAG
GCCGATAGAATCTCCCCGCGGTGGGAGCAAGAGGGGTCGGAGCGTTGATT
TCGATCGGGGCTTGGATAATCGGGACGAAAGGCAGCGCAGCCGCGACAGC
CGAGAAAAAAAAAAGAGTAAGACTAAAAAAAGGAAGCACCAAAACTAGGG
ACAGCAAATGAAACGCCCGGCAACTCGCTGCATCGACCCCTCGGCAATGG
TGTCCTCGCGGGGGATGGGACCGCACAGCGTCCGCCCCAAGACGATACGC
GAATCCCGCGAGCCACGCTCTAATAGCGTCGGCGTCGGCGGGAGCAGTCT
GCCGCCGGGTACGGCGCGCGGGTCCTTCGCGAAGCACGATCAGTTCTCTT
CGAGCGGCGGCAGTGGAGGCGGCGTCACGGGGAGCAGACGCAACGGGCGC
GACCTCGATAGCCGTGACGATCCCCGCAGCATCAGTGGCATCAGTTTTGG
TTGTGGTCCGGGGCGAGAGCATGAGAGGACGGGAACGAGAATGAGGGGAG
ACGGTGATCGTTACCTGGAAGAGCCCAGATCGCGGCGGGCGGACGAAGTT
GACATGTACCCTCGCGGCGGGAGTTCCAGTGGTGGAGGCAGTCTGACGTG
GCGAGATGGGAGGCCGATAGAATCTCCCCGCGGTGGGAGCAAGAGGGGTC
GGAGCGTTGATTTCGATCGGGGCTTGGATAATCGGGACGAAAGGCAGCGC
AGCCGCGACAGCCGAGAAAAAAAAAAGAGTAAGACTAAAAAAAGGAAGCA
CCAAAACTAG
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