mRNA_H-elongata_contig92419.16696.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92419.16696.1
Unique NamemRNA_H-elongata_contig92419.16696.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig92419.16696.1 vs. uniprot
Match: D8LTK4_ECTSI (Caffeoyl-CoA O-Methyltransferase (N-terminal region) Caffeoyl-CoA O-Methyltransferase (C-terminal r) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 7.630e-13
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 LKIGRSLDDFNKRVRGDDRVDVLMLPLRDGLSIIRWREGMYP 126
            +KI  SLD FNKRV+ D RV+VLMLPLRDGLS++RWR G YP
Sbjct:  182 MKIAESLDRFNKRVKEDGRVEVLMLPLRDGLSVVRWRAGGYP 223
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BLAST of mRNA_H-elongata_contig92419.16696.1 vs. uniprot
Match: A0A6H5KFJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.030e-10
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 LKIGRSLDDFNKRVRGDDRVDVLMLPLRDGLSIIRWREGMYP 126
            +KI  SLD FNKRV+ D RV+VLMLPLRDGLS++RWR   +P
Sbjct:  362 MKIAESLDRFNKRVKEDGRVEVLMLPLRDGLSVVRWRARGFP 403
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BLAST of mRNA_H-elongata_contig92419.16696.1 vs. uniprot
Match: Q2GMQ3_CHAGB (Uncharacterized protein n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2GMQ3_CHAGB)

HSP 1 Score: 50.1 bits (118), Expect = 6.760e-6
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 LKIGRSLDDFNKRVRGDDRVDVLMLPLRDGLSIIRWRE 114
            L  G++LD+FN  +  D+RVDVL+LPL DG++ IRWR+
Sbjct:  198 LSCGQALDEFNTNLMKDERVDVLLLPLFDGVTQIRWRD 235
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BLAST of mRNA_H-elongata_contig92419.16696.1 vs. uniprot
Match: UPI0019A4C0AF (Class I SAM-dependent methyltransferase n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=UPI0019A4C0AF)

HSP 1 Score: 48.1 bits (113), Expect = 3.040e-5
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 KIGRSLDDFNKRVRGDDRVDVLMLPLRDGLSIIRWREG 117
            K  R++D FNK+++ D+RV+ ++LPLRDGL IIR R G
Sbjct:  179 KDARAMDAFNKKIQTDERVENMLLPLRDGLMIIRKRTG 216
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BLAST of mRNA_H-elongata_contig92419.16696.1 vs. uniprot
Match: A0A8K0UM77_9AGAM (O-methyltransferase-domain-containing protein n=1 Tax=Cristinia sonorae TaxID=1940300 RepID=A0A8K0UM77_9AGAM)

HSP 1 Score: 47.4 bits (111), Expect = 7.160e-5
Identity = 20/37 (54.05%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    7 IGRSLDDFNKRVRGDDRVDVLMLPLRDGLSIIRWREG 117
            +G+ +D+FNK++R D  VDV+MLP+ DG+S+IR R+G
Sbjct:  251 MGQVIDEFNKKIRSDPSVDVVMLPIEDGVSLIR-RKG 286
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BLAST of mRNA_H-elongata_contig92419.16696.1 vs. uniprot
Match: UPI00148A3E3D (probable caffeoyl-CoA O-methyltransferase 3 isoform X3 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A3E3D)

HSP 1 Score: 47.0 bits (110), Expect = 7.620e-5
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 KIGRSLDDFNKRVRGDDRVDVLMLPLRDGLSIIRWREGM 120
            +IG+S+ +FN+ VR DDRV  +M+P+RDGL IIR +E +
Sbjct:  164 EIGQSIINFNEMVRKDDRVHKIMVPIRDGLMIIRRKEDV 202
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BLAST of mRNA_H-elongata_contig92419.16696.1 vs. uniprot
Match: UPI00148A8939 (O-methyltransferase MdmC n=3 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A8939)

HSP 1 Score: 47.0 bits (110), Expect = 9.670e-5
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 KIGRSLDDFNKRVRGDDRVDVLMLPLRDGLSIIRWREGM 120
            +IG+S+ +FN+ VR DDRV  +M+P+RDGL IIR +E +
Sbjct:  234 EIGQSIINFNEMVRKDDRVHKIMVPIRDGLMIIRRKEDV 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92419.16696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LTK4_ECTSI7.630e-1371.43Caffeoyl-CoA O-Methyltransferase (N-terminal regio... [more]
A0A6H5KFJ8_9PHAE1.030e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q2GMQ3_CHAGB6.760e-655.26Uncharacterized protein n=1 Tax=Chaetomium globosu... [more]
UPI0019A4C0AF3.040e-555.26Class I SAM-dependent methyltransferase n=1 Tax=Ba... [more]
A0A8K0UM77_9AGAM7.160e-554.05O-methyltransferase-domain-containing protein n=1 ... [more]
UPI00148A3E3D7.620e-553.85probable caffeoyl-CoA O-methyltransferase 3 isofor... [more]
UPI00148A89399.670e-553.85O-methyltransferase MdmC n=3 Tax=Crassostrea gigas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92419contigH-elongata_contig92419:8..142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue5.1e-10
Seed eggNOG ortholog2880.D8LTK4
EggNOG free text desc.O-methyltransferase activity
EggNOG OGsCOG4122@1,KOG1663@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.0883286-CDS-H-elongata_contig92419:7..1421622931322.0883286-CDS-H-elongata_contig92419:7..142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92419 8..142 +
1691679789.2549493-CDS-H-elongata_contig92419:7..1421691679789.2549493-CDS-H-elongata_contig92419:7..142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92419 8..142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92419.16696.1prot_H-elongata_contig92419.16696.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92419 8..142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92419.16696.1

>prot_H-elongata_contig92419.16696.1 ID=prot_H-elongata_contig92419.16696.1|Name=mRNA_H-elongata_contig92419.16696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
LKIGRSLDDFNKRVRGDDRVDVLMLPLRDGLSIIRWREGMYPKD*
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mRNA from alignment at H-elongata_contig92419:8..142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92419.16696.1 ID=mRNA_H-elongata_contig92419.16696.1|Name=mRNA_H-elongata_contig92419.16696.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig92419:8..142+ (Himanthalia elongata Himel1 dioecious)
TTAAAGATCGGTCGATCTCTGGACGATTTCAATAAGCGAGTCCGGGGTGA
CGATCGGGTGGATGTCTTGATGCTGCCCTTACGGGACGGCTTGTCCATTA
TACGATGGCGGGAGGGGATGTATCCCAAAGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig92419:8..142+

>mRNA_H-elongata_contig92419.16696.1 ID=mRNA_H-elongata_contig92419.16696.1|Name=mRNA_H-elongata_contig92419.16696.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig92419:8..142+ (Himanthalia elongata Himel1 dioecious)
TTAAAGATCGGTCGATCTCTGGACGATTTCAATAAGCGAGTCCGGGGTGA
CGATCGGGTGGATGTCTTGATGCTGCCCTTACGGGACGGCTTGTCCATTA
TACGATGGCGGGAGGGGATGTATCCCAAAGATTGATTAAAGATCGGTCGA
TCTCTGGACGATTTCAATAAGCGAGTCCGGGGTGACGATCGGGTGGATGT
CTTGATGCTGCCCTTACGGGACGGCTTGTCCATTATACGATGGCGGGAGG
GGATGTATCCCAAAGATTGA
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