mRNA_H-elongata_contig92385.16693.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92385.16693.1
Unique NamemRNA_H-elongata_contig92385.16693.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig92385.16693.1 vs. uniprot
Match: A0A7S0RGS6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RGS6_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 3.000e-5
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:    1 DPSHAHAWQAWGLMEARVGNYEIARSLWESGLKTCP 108
            DP H H WQAWG+MEA +GN + AR L++ G+   P
Sbjct:  167 DPGHLHLWQAWGVMEASLGNLDRARQLYQEGVWADP 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92385.16693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0RGS6_9CHLO3.000e-552.78Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92385contigH-elongata_contig92385:1482..1619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog2903.EOD12078
KEGG rclassRC00010,RC00100,RC00950,RC01025
KEGG koko:K01426,ko:K12855,ko:K16531
KEGG ReactionR02540,R03096,R03180,R03909,R05551,R05590
KEGG Pathwayko00330,ko00360,ko00380,ko00627,ko00643,ko01120,ko03040,map00330,map00360,map00380,map00627,map00643,map01120,map03040
KEGG ModuleM00354
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
EC3.5.1.4
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931321.9030704-CDS-H-elongata_contig92385:1481..16191622931321.9030704-CDS-H-elongata_contig92385:1481..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92385 1482..1619 +
1691679789.1833067-CDS-H-elongata_contig92385:1481..16191691679789.1833067-CDS-H-elongata_contig92385:1481..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92385 1482..1619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92385.16693.1prot_H-elongata_contig92385.16693.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92385 1482..1619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92385.16693.1

>prot_H-elongata_contig92385.16693.1 ID=prot_H-elongata_contig92385.16693.1|Name=mRNA_H-elongata_contig92385.16693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
DPSHAHAWQAWGLMEARVGNYEIARSLWESGLKTCPVHGPLWQVL*
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mRNA from alignment at H-elongata_contig92385:1482..1619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92385.16693.1 ID=mRNA_H-elongata_contig92385.16693.1|Name=mRNA_H-elongata_contig92385.16693.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig92385:1482..1619+ (Himanthalia elongata Himel1 dioecious)
GACCCCTCTCACGCGCACGCATGGCAAGCATGGGGTCTGATGGAGGCTCG
AGTGGGAAACTACGAGATCGCCAGGTCGCTGTGGGAGAGCGGGCTTAAGA
CCTGCCCCGTGCACGGGCCCCTGTGGCAGGTGCTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig92385:1482..1619+

>mRNA_H-elongata_contig92385.16693.1 ID=mRNA_H-elongata_contig92385.16693.1|Name=mRNA_H-elongata_contig92385.16693.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig92385:1482..1619+ (Himanthalia elongata Himel1 dioecious)
GACCCCTCTCACGCGCACGCATGGCAAGCATGGGGTCTGATGGAGGCTCG
AGTGGGAAACTACGAGATCGCCAGGTCGCTGTGGGAGAGCGGGCTTAAGA
CCTGCCCCGTGCACGGGCCCCTGTGGCAGGTGCTTTGAGACCCCTCTCAC
GCGCACGCATGGCAAGCATGGGGTCTGATGGAGGCTCGAGTGGGAAACTA
CGAGATCGCCAGGTCGCTGTGGGAGAGCGGGCTTAAGACCTGCCCCGTGC
ACGGGCCCCTGTGGCAGGTGCTTTGA
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