mRNA_H-elongata_contig91851.16640.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A6H5JNJ8_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNJ8_9PHAE) HSP 1 Score: 368 bits (944), Expect = 4.390e-118 Identity = 201/397 (50.63%), Postives = 256/397 (64.48%), Query Frame = 3
Query: 48 SKIWRELRKLRD-LPPL-----------QRGRNTYNDYQSFAACNEVRSTLGPCAGLPRKEFLAIFTCLGNGSHLEELVQLLGGSRQ--HPALQYACLIALNGIAELNDRRVDMLTNRGLVCELLSMISSPQPRIITSSNVGLAPAGVVNPAAGAVTAITGLFSSNRTLESEYANLWVELGAVQALICCLEGHVAFDRGDPVTNDLPLCLFLISHSLLAGAADAIPEPEKLRLGTAWLQLFVDAREWIADDAEQMLVNFYTRPNWVGSVVLEIPQQLRVLAVEAAQRCEAEG---GS--WGGDRVHQLALALSCANV--WHQGQFRITSKRCARVGCVHAEQGNGDRGCSQVDVERDMGG----APRLKRCSQCRGVFYCSRECQVAHWRSGHREAC 1163
SKIW+ELRKLRD +PP Q Y D+ +FAACNEVR +G + LPR +FLAIF L G L+EL++L SR HPALQYACL+AL+G+AEL+DRR D+LT +V EL ++++SP+ R++T ++ G +VN AAGAVT ITGLF+SN LE YA LWVELGAV AL CLE H FDR +PV+ DLPLC FLI+ SLLAGAAD++ E +KLRLG AWL +F++A WIAD+A +L +FYTRPNW+ ++V +P++LR AV AA+ CE EG GS W G + +LALAL C N W G + +RCA C ++ G D GG + KRCSQC V YCSRECQ A W+ HR+AC
Sbjct: 9 SKIWQELRKLRDDIPPPVDNNTGSNKGDQESSTCYKDFAAFAACNEVRVAIGRSSALPRDQFLAIFRQLVAGPRLDELLELFKFSRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGAVTTITGLFTSNGPLEPPYAKLWVELGAVSALASCLENHAVFDRSNPVSGDLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLTVFLEATRWIADEAADLLADFYTRPNWLKNIVERMPEKLRASAVAAARECEREGTGSGSSPWKGGKADRLALALLCGNAYNWDAGG-ELVGRRCAGPRCDRVQKCGHGGGNPHPAASEDEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKK-HRKAC 403
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A6H5KPW0_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW0_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.580e-34 Identity = 118/421 (28.03%), Postives = 186/421 (44.18%), Query Frame = 3
Query: 54 IWRELRKLRDLPPLQRGRNTYNDYQSFAACNEVRSTLGPCAGLPRKEFLAIFTCLGNGSHLEELVQLLGGSRQHPALQYACLIALNGIAELNDRRVDMLTNRGLVCELLSMISSPQPRIITSSNVGLAPAGVVNPAAGAVTAITGLFSSNRTLESEYANLWVELGAVQALICCLEGHVAFDRGDPVTNDLPLCLFLISHSLLAGAADAIPEPEKLRLGTAWLQLFVDAREWIADDAEQMLVNFYTRPNWVGSVVLEIPQQLRVLAVEAAQRCEAEGGSWGGDRVHQLALALSCANVWHQG-------------------QFRITSKRCARVGCVHAEQG-------------NGDRG------------------CSQVDVERDMGGAPR-LKRCSQCRGVFYCSRECQVAHWRSGHREAC 1163
+W ++RKLRD P++ Y D + A + L P + R+ L+++ + +G L++L+ L GS++HPAL+YACL L + +L +L ++ LL+++ +PRI+ S P+ + PAA A ++ L ++ L+ +A WV LGA+ A+ LE + A D P+ +F+IS LL+ A A+ ++ R+ L L+V+ R W+A A L + + P G ++ P +LR AV+ A+ AEG S GG V +A LS + G +T A G V G RG CS+ R G KRC +CR YCS++CQVAHW+ H+ C
Sbjct: 24 LWDQIRKLRDCAPMEG--EFYPDEEPAKALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPALRYACLELLGFVGQLKQTHRRLLCRMDVIKTLLTVLE--RPRIVPISPY--CPSNDICPAAEAARVLSVLCAAEGGLKGAHAEEWVSLGALGAISSALEFNAAIPD---YFTDFPMVMFMISGVLLSEAGHAVSLDDRARVAETSLGLWVERRRWVAPYAGS-LGSLFEGP-LRGEALMRAPLELRNQAVKQAEDFIAEGFSLGGWAVRLVAAILSESPADGGGGGDGVAGNXXXXXXXXXXXXXXVTDSASATAGGVGPTSGVSGPVRPSGGKQVPSTRGHLNVVLSDIKRGADAAVLCSRETCGRRQGDVKEGFKRCGRCRTTVYCSKDCQVAHWKEKHKMEC 433
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A836C0P3_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C0P3_9CHLO) HSP 1 Score: 69.3 bits (168), Expect = 2.270e-8 Identity = 48/127 (37.80%), Postives = 61/127 (48.03%), Query Frame = 3
Query: 825 PQQLRVLAVEAAQRCEAEGGSWGGDRVH---QLALALSCANVWHQGQFRI-------TSKRCARVGCVHAEQGNGDRGCSQ---VDVERDMGGAPRLKRCSQCRGVFYCSRECQVAHWRSGHREACG 1166
P+ LR+LA A R AE GS+GGD + LA AL +G R+ + RV V E C V + +L++C QCR V YC RECQ AHWR+GH+EACG
Sbjct: 1864 PEALRLLAWHA-WRLGAERGSFGGDVIEWVTALASALETGGTL-EGAVRVGPGSGGGAGEAAGRVAEVLVEAKALLPACGNPTCVSLAGPSEAEQKLQKCGQCRRVSYCCRECQAAHWRAGHKEACG 1988
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A836C0Q2_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C0Q2_9CHLO) HSP 1 Score: 64.7 bits (156), Expect = 4.950e-7 Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 3
Query: 837 RVLAVEAAQRCEAEGG-SWGGDRVHQLALALSCANVWHQ--GQFRITSKRCARVGCVHAEQGNGDRGCSQVDVERDMGGAPRLKRCSQCRGVFYCSRECQVAHWRSGHREAC 1163
RV AV AA EA G GGD +LA A ++ G+ R CA CV+ E G S+ D+ +L++C +C V+YC RECQVAHW++GH++AC
Sbjct: 802 RVTAVSAA--LEAGGVIPAGGDSSEELAARRHRAGLYAAALGRARDHLALCANPACVNLE------GDSEADL--------KLQQCGRCGRVWYCCRECQVAHWKAGHKKAC 897
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A835XEB1_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XEB1_9CHLO) HSP 1 Score: 60.8 bits (146), Expect = 5.340e-7 Identity = 48/138 (34.78%), Postives = 55/138 (39.86%), Query Frame = 3
Query: 825 PQQLRVLAVEAAQRCEAEG------------------GSWGGDRVHQLALALSCA---NVWHQGQFRITSKRCARVGCVHAEQGNGDRGCSQ---VDVERDMGGAPRLKRCSQCRGVF-YCSRECQVAHWRSGHREAC 1163
PQQLR L E R A G GG R + A + A W G + A A G GCS ++E D A L+ C+ C G YCSRECQ AHWRSGHREAC
Sbjct: 36 PQQLRSLGAECRARGHAAAAEALAAQLVRWAHGSGPRGGRGGARASAASGAHALAARFGAWFPGLEAAAALLPASPAAARACLG----GCSNPACANLEGDSDAALPLRACAGCGGTASYCSRECQTAHWRSGHREAC 169
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A835XMW0_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XMW0_9CHLO) HSP 1 Score: 60.1 bits (144), Expect = 6.800e-7 Identity = 49/148 (33.11%), Postives = 67/148 (45.27%), Query Frame = 3
Query: 786 TRPNWVGSV-----VLEIPQQLRVLAVEAAQRCE----AEGGSWGGDRVHQLALALS----CANVWHQGQFRITS---KRCAR--VGCVHAEQGNGDRGCSQ---VDVERDMGGAPRLKRCSQCRGVFYCSRECQVAHWRSGHREACG 1166
TRP VG++ + ++ V+ VEA +R + E GS+ G + A A W G F S R A+ V A + G CS ++ D RL++C +C YC RECQ AHWRSGH+EACG
Sbjct: 9 TRPEEVGALGASGSAVAWQRKAVVVVVEAMRRVQEDQQGEAGSYAGAATYLAAWAAGEGAEIEAAW--GAFVHNSCLIHRTAQQLVPPAEARRRLGLPACSNPACANLAGDSEAGLRLQQCGRCGRASYCCRECQTAHWRSGHKEACG 154
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A836BNV0_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNV0_9CHLO) HSP 1 Score: 63.5 bits (153), Expect = 1.070e-6 Identity = 51/141 (36.17%), Postives = 60/141 (42.55%), Query Frame = 3
Query: 825 PQQLRVL-----------AVEAAQRCEAEGGSW----------GGDRVHQLALALSCA---NVWHQGQFRITSKRCARVGCVHAEQGNGDRGCSQ---VDVERDMGGAPRLKRCSQCRGVF-YCSRECQVAHWRSGHREAC 1163
PQQLR L A EAA+ A+ W GG RV + A + A W G + A A G GCS ++E D A L+ C+ C G YCSRECQ AHWRSGHREAC
Sbjct: 644 PQQLRTLGAECRARGHAAAAEAAEALAAQLVRWAYGSGPRGGRGGARVSAASGAQALAARFGAWFPGLEAAAALLPASPAAARACLG----GCSNPACANLEGDSDAALPLRACAGCGGAASYCSRECQTAHWRSGHREAC 780
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A835XH40_9CHLO (MYND-type domain-containing protein n=3 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XH40_9CHLO) HSP 1 Score: 63.5 bits (153), Expect = 1.190e-6 Identity = 52/142 (36.62%), Postives = 58/142 (40.85%), Query Frame = 3
Query: 825 PQQLRVLAVEAAQR---CEAEG---------------GSWGGDRVHQL-----ALALSCA-NVWHQGQFRITSKRCARVGCVHAEQGNGDRGCSQ---VDVERDMGGAPRLKRCSQCRGV-FYCSRECQVAHWRSGHREACG 1166
PQQLR L E R EAE G GG A AL+ W G + A A G GCS ++E D A L+ C+ C G FYCSRECQ AHWRSGHREACG
Sbjct: 899 PQQLRSLGAECRARGYMAEAEAVEALAAQLVRWVHGSGPRGGRXXXXXXXXXGAQALAARFGAWFPGLEAAAALLPASPAAARARLG----GCSNPTCANLEGDSDAALPLRACAVCGGAAFYCSRECQTAHWRSGHREACG 1036
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A836C254_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C254_9CHLO) HSP 1 Score: 63.2 bits (152), Expect = 1.420e-6 Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 3
Query: 828 QQLRVLAVEAAQRCEAEGGSWGGDRVHQLALALSCANVWH-----QGQFRITSKRCARVGCVHAEQGNGDRGCSQVDVERDMGGAPRLKRCSQCRGVFYCSRECQVAHWRSGHREAC 1163
Q+L L E Q + GS ++++ A+A A Q + R CA CV+ G S+ DV +L+RC++C+GV YC RECQ AHW++GH+ C
Sbjct: 712 QELEALVAELEQPHQ---GSMPPRKLNRRAIAAGLAAATKRLAALQAEARALLPACANPACVNLA------GESEADV--------KLQRCARCKGVSYCCRECQTAHWKAGHKAVC 811
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Match: A0A1Y1I581_KLENI (MYND-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I581_KLENI) HSP 1 Score: 63.2 bits (152), Expect = 1.520e-6 Identity = 51/165 (30.91%), Postives = 76/165 (46.06%), Query Frame = 3
Query: 681 PEPEKLRLGTAWLQLFVDAREWIADDAEQMLVNFYTRPNWVGSVVLEI---PQQLRVLAVEAAQRCEAEGGSWGGDRVHQLALALSCAN-VWHQGQFRITSKRCARVGCVHAEQGNGDRGCSQVDVERDMGGAPRLKRCSQCRGVFYCSRECQVAHWRSGHREAC 1163
P P R+ A QL + I D +E V F R V + + I P +L + + E + WG +LA A A+ +W + + + +RC RV N + C Q + + GG K+C + GVFYCSR+CQV HW+ GH++AC
Sbjct: 804 PPPVWPRVFGAVYQLLKVLADVIRDQSEPAFVEF-VRSGGVEAAAVFIDLNPTRLLMCQSDDPNIWETD---WGLRARKRLAEAADLADGLWERAEAKYGLRRCGRVK-------NAFQRCHQRETK---GGT--FKQCGRKCGVFYCSRDCQVNHWKEGHKQAC 952 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91851.16640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig91851.16640.1 >prot_H-elongata_contig91851.16640.1 ID=prot_H-elongata_contig91851.16640.1|Name=mRNA_H-elongata_contig91851.16640.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=409bp MNMDADKAPIVASICSKIWRELRKLRDLPPLQRGRNTYNDYQSFAACNEVback to top mRNA from alignment at H-elongata_contig91851:363..2568+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig91851.16640.1 ID=mRNA_H-elongata_contig91851.16640.1|Name=mRNA_H-elongata_contig91851.16640.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2206bp|location=Sequence derived from alignment at H-elongata_contig91851:363..2568+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig91851:363..2568+ >mRNA_H-elongata_contig91851.16640.1 ID=mRNA_H-elongata_contig91851.16640.1|Name=mRNA_H-elongata_contig91851.16640.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2454bp|location=Sequence derived from alignment at H-elongata_contig91851:363..2568+ (Himanthalia elongata Himel1 dioecious)back to top |