mRNA_H-elongata_contig91805.16638.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91805.16638.1
Unique NamemRNA_H-elongata_contig91805.16638.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5KBF3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF3_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.540e-25
Identity = 56/137 (40.88%), Postives = 77/137 (56.20%), Query Frame = 1 
Query:    4 GCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISIKSNFG-TFGVAYAPTEEAKE------GEKAKYIAALNSTVSSVPDHEYVFILTDANARTGK 393
            GCD+I LQET+R+G   I   GY + + G   G K KKG H VG+AIKE +     ++   +ECIS RL K R+ I    G TF V YAPTE  +         K  +  AL++ +  V   +++ +L DANARTG+
Sbjct:   11 GCDVIRLQETRREGQGSIAHDGYVIIWSGARAGTKDKKGVHRVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFSTALDAAIREVHSRDHLVVLMDANARTGR 147
[Close]
BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.190e-25
Identity = 58/138 (42.03%), Postives = 82/138 (59.42%), Query Frame = 1 
Query:    4 GCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISI-KSNFGTFGVAYAPTEEAKE------GEKAKYIAALNSTVSSVPDHEYVFILTDANARTGKR 396
            GCD+IELQET+R+G   I   GY + + G   G K K+G HGVG+AIKE +     ++   +ECIS RL KAR+ I ++   TF V YAPTE  +         K  +  AL++ +  V   +++ +L DANARTG+R
Sbjct:   11 GCDVIELQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTGRR 148
[Close]
BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.320e-25
Identity = 57/138 (41.30%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    4 GCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISIKSNFG-TFGVAYAPTEEAKE------GEKAKYIAALNSTVSSVPDHEYVFILTDANARTGKR 396
            GCD+I LQET+R+G   I   GY + + G   G K K+G HGVG+AIKE +     ++   +ECI  RL K R+ I    G TF V YAPTE  +         K  +  AL++ +  V  H+++ +L DANARTG+R
Sbjct:  181 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRR 318
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BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 5.020e-25
Identity = 57/138 (41.30%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    4 GCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISIKSNFG-TFGVAYAPTEEAKE------GEKAKYIAALNSTVSSVPDHEYVFILTDANARTGKR 396
            GCD+I LQET+R+G   I   GY + + G   G K K+G HGVG+AIKE +     ++   +ECIS RL K R+ I    G TF V YAPTE  +         K  +  AL++ +  V   +++ +L DANARTG+R
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
[Close]
BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.060e-25
Identity = 57/138 (41.30%), Postives = 78/138 (56.52%), Query Frame = 1 
Query:    4 GCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISIKSNFG-TFGVAYAPTEEAKE------GEKAKYIAALNSTVSSVPDHEYVFILTDANARTGKR 396
            GCD+I LQET+R+G   I   GY + + G   G K K+G HGVG+AIKE I     ++   +ECIS RL K R+ I    G TF V YAPTE  +         K  +  AL++ +  V   +++ +L  ANARTG+R
Sbjct:   42 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRR 179
[Close]
BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.430e-24
Identity = 58/138 (42.03%), Postives = 78/138 (56.52%), Query Frame = 1 
Query:    4 GCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISIKSNFG-TFGVAYAPTEEAKE------GEKAKYIAALNSTVSSVPDHEYVFILTDANARTGKR 396
            GCD+I LQET+R+G   I   GY   + G   G KGK G HGVG+AIKE +     ++   +ECIS RL K R+ I    G TF V YAPTE  +         K  +  AL++ +  V   +++ +L DANARTG+R
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
[Close]
BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.430e-24
Identity = 56/137 (40.88%), Postives = 77/137 (56.20%), Query Frame = 1 
Query:    7 CDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISIKSNFG-TFGVAYAPTEEAKE------GEKAKYIAALNSTVSSVPDHEYVFILTDANARTGKR 396
            CD+I LQET+R+G   I   GY + + G   G K K+G HGVG AIKE +     ++   +ECIS RL K R+ I    G TF V YAPTE  +         K  +  AL++ +  V   +++ +L DANARTG+R
Sbjct:   12 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
[Close]
BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.380e-24
Identity = 57/138 (41.30%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    4 GCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISIKSNFG-TFGVAYAPTEEAKE------GEKAKYIAALNSTVSSVPDHEYVFILTDANARTGKR 396
            GCD+I LQET+R+G   I   GY + + G   G K K+G HGVG+AIKE +     ++   +ECIS RL K R+ I    G TF V YAPTE  +         K  +  AL++ +  V   +++ +L DANARTG+R
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
[Close]
BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5KTK0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.600e-24
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    4 GCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISIKSNFG-TFGVAYAPTEEAKEGE------KAKYIAALNSTVSSVPDHEYVFILTDANARTGKR 396
            GCD+I LQET+R+G   I   GY + + G   G K K+G HGVG+AIKE +     ++   +ECIS RL K R+ I    G TF V YAPTE  +         K  +  AL++ +  V  H+++ +  DANARTG++
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTNAGGDVHAKESFWTALDAVMREVHSHDHLVVPMDANARTGRK 148
[Close]
BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.690e-24
Identity = 57/138 (41.30%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    4 GCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKEEIVLKASKDDIAIECISARLWKARISIKSNFG-TFGVAYAPTEEAKE------GEKAKYIAALNSTVSSVPDHEYVFILTDANARTGKR 396
            GCD+I LQET+R+G   I   GY + + G   G K K+G HGVG+AIKE +     ++   +ECIS RL K R+ I    G TF V YAPTE  +         K  +  AL++ +  V   +++ +L DANARTG+R
Sbjct:  690 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 827
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91805.16638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBF3_9PHAE1.540e-2540.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT2_9PHAE3.190e-2542.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L660_9PHAE4.320e-2541.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBZ6_9PHAE5.020e-2541.30Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KZE6_9PHAE7.060e-2541.30Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KQ63_9PHAE1.430e-2442.03Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMM5_9PHAE1.430e-2440.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7A7_9PHAE3.380e-2441.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTK0_9PHAE4.600e-2440.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1H7_9PHAE4.690e-2441.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91805contigH-elongata_contig91805:99..494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue9.1e-07
Seed eggNOG ortholog28377.ENSACAP00000020197
EggNOG free text desc.Endonuclease-reverse transcriptase
EggNOG OGs39VM0@33154,3BKMM@33208,3D1CS@33213,48RU4@7711,49N7J@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931316.1321166-CDS-H-elongata_contig91805:98..4941622931316.1321166-CDS-H-elongata_contig91805:98..494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91805 99..494 +
1691679786.5852103-CDS-H-elongata_contig91805:98..4941691679786.5852103-CDS-H-elongata_contig91805:98..494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91805 99..494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91805.16638.1prot_H-elongata_contig91805.16638.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91805 99..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91805.16638.1

>prot_H-elongata_contig91805.16638.1 ID=prot_H-elongata_contig91805.16638.1|Name=mRNA_H-elongata_contig91805.16638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
RGCDIIELQETKRDGHSEITLSGYRVYFRGDCTGVKGKKGQHGVGLAIKE
EIVLKASKDDIAIECISARLWKARISIKSNFGTFGVAYAPTEEAKEGEKA
KYIAALNSTVSSVPDHEYVFILTDANARTGKR
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mRNA from alignment at H-elongata_contig91805:99..494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91805.16638.1 ID=mRNA_H-elongata_contig91805.16638.1|Name=mRNA_H-elongata_contig91805.16638.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig91805:99..494+ (Himanthalia elongata Himel1 dioecious)
AGAGGGTGTGATATTATTGAACTGCAGGAGACAAAACGGGACGGACATTC
TGAAATAACTTTATCTGGATACCGGGTCTATTTCCGTGGTGACTGTACCG
GAGTCAAAGGGAAGAAAGGGCAACATGGGGTAGGACTAGCGATAAAGGAG
GAGATCGTTCTTAAGGCCAGCAAGGACGACATCGCAATCGAGTGCATCAG
CGCACGTCTCTGGAAGGCTCGAATATCGATTAAATCTAATTTTGGTACGT
TTGGGGTAGCCTACGCTCCGACCGAGGAAGCGAAGGAGGGGGAGAAGGCC
AAGTATATCGCAGCCCTCAACAGCACCGTGTCATCAGTGCCCGATCATGA
ATACGTGTTCATTTTGACCGACGCAAATGCCAGGACAGGGAAAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig91805:99..494+

>mRNA_H-elongata_contig91805.16638.1 ID=mRNA_H-elongata_contig91805.16638.1|Name=mRNA_H-elongata_contig91805.16638.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig91805:99..494+ (Himanthalia elongata Himel1 dioecious)
AGAGGGTGTGATATTATTGAACTGCAGGAGACAAAACGGGACGGACATTC
TGAAATAACTTTATCTGGATACCGGGTCTATTTCCGTGGTGACTGTACCG
GAGTCAAAGGGAAGAAAGGGCAACATGGGGTAGGACTAGCGATAAAGGAG
GAGATCGTTCTTAAGGCCAGCAAGGACGACATCGCAATCGAGTGCATCAG
CGCACGTCTCTGGAAGGCTCGAATATCGATTAAATCTAATTTTGGTACGT
TTGGGGTAGCCTACGCTCCGACCGAGGAAGCGAAGGAGGGGGAGAAGGCC
AAGTATATCGCAGCCCTCAACAGCACCGTGTCATCAGTGCCCGATCATGA
ATACGTGTTCATTTTGACCGACGCAAATGCCAGGACAGGGAAAAGGAGAG
GGTGTGATATTATTGAACTGCAGGAGACAAAACGGGACGGACATTCTGAA
ATAACTTTATCTGGATACCGGGTCTATTTCCGTGGTGACTGTACCGGAGT
CAAAGGGAAGAAAGGGCAACATGGGGTAGGACTAGCGATAAAGGAGGAGA
TCGTTCTTAAGGCCAGCAAGGACGACATCGCAATCGAGTGCATCAGCGCA
CGTCTCTGGAAGGCTCGAATATCGATTAAATCTAATTTTGGTACGTTTGG
GGTAGCCTACGCTCCGACCGAGGAAGCGAAGGAGGGGGAGAAGGCCAAGT
ATATCGCAGCCCTCAACAGCACCGTGTCATCAGTGCCCGATCATGAATAC
GTGTTCATTTTGACCGACGCAAATGCCAGGACAGGGAAAAGG
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