mRNA_H-elongata_contig918.16636.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig918.16636.1
Unique NamemRNA_H-elongata_contig918.16636.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig918.16636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig918contigH-elongata_contig918:10878..11380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_000200.1
Exons2
Model size286
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931315.952272-CDS-H-elongata_contig918:10879..109061622931315.952272-CDS-H-elongata_contig918:10879..10906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig918 10880..10906 -
1691679786.5141222-CDS-H-elongata_contig918:10879..109061691679786.5141222-CDS-H-elongata_contig918:10879..10906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig918 10880..10906 -
1622931315.9731588-CDS-H-elongata_contig918:11125..113801622931315.9731588-CDS-H-elongata_contig918:11125..11380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig918 11126..11380 -
1691679786.5239055-CDS-H-elongata_contig918:11125..113801691679786.5239055-CDS-H-elongata_contig918:11125..11380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig918 11126..11380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig918.16636.1prot_H-elongata_contig918.16636.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig918 10880..11380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig918.16636.1

>prot_H-elongata_contig918.16636.1 ID=prot_H-elongata_contig918.16636.1|Name=mRNA_H-elongata_contig918.16636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
YVEDVTSATKAERANTLLKTRLAAMKKREGSTTTPPRGMTARDQPSHHHV
TASAEGARVRFGERSAPREEELIAVKISLAQSLAHAGELEAQMH
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mRNA from alignment at H-elongata_contig918:10878..11380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig918.16636.1 ID=mRNA_H-elongata_contig918.16636.1|Name=mRNA_H-elongata_contig918.16636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=503bp|location=Sequence derived from alignment at H-elongata_contig918:10878..11380- (Himanthalia elongata Himel1 dioecious)
TATGTGGAAGATGTCACCTCTGCGACCAAGGCAGAGCGGGCAAACACGCT
CCTGAAGACTCGCCTCGCGGCCATGAAGAAAAGAGAAGGAAGCACTACTA
CACCTCCACGAGGCATGACTGCACGTGATCAGCCGTCTCACCACCATGTC
ACTGCTTCCGCGGAGGGGGCCAGGGTTAGGTTTGGCGAAAGGAGTGCACC
AAGAGAGGAAGAGCTGATTGCCGTCAAGATTTCCCTGGCGCAATCCTTGG
CGCATGTGAGCGTTGAGTGAAATATGGGGTACCGCGATGCTGCATGCAGA
TGGACGATTCGGGCGTTCCTCATTTTAAAAATTGGTGCCCACTCCGCACT
GAACAAGCTAGACCAGGACTTCCGTGGTAAAGAAATCCCCAATCGCATCG
TGCGCGCGTTCGTGTCTTGTCTACGAAGTATTTTTTTGATTCGTTTTTTC
TTTTCCGACAGTGTGCTGTGTCAGGCCGGAGAGCTGGAGGCCCAGATGCA
CGC
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Coding sequence (CDS) from alignment at H-elongata_contig918:10878..11380-

>mRNA_H-elongata_contig918.16636.1 ID=mRNA_H-elongata_contig918.16636.1|Name=mRNA_H-elongata_contig918.16636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig918:10878..11380- (Himanthalia elongata Himel1 dioecious)
TATGTGGAAGATGTCACCTCTGCGACCAAGGCAGAGCGGGCAAACACGCT
CCTGAAGACTCGCCTCGCGGCCATGAAGAAAAGAGAAGGAAGCACTACTA
CACCTCCACGAGGCATGACTGCACGTGATCAGCCGTCTCACCACCATGTC
ACTGCTTCCGCGGAGGGGGCCAGGGTTAGGTTTGGCGAAAGGAGTGCACC
AAGAGAGGAAGAGCTGATTGCCGTCAAGATTTCCCTGGCGCAATCCTTGG
CGCATTATGTGGAAGATGTCACCTCTGCGACCAAGGCAGAGCGGGCAAAC
ACGCTCCTGAAGACTCGCCTCGCGGCCATGAAGAAAAGAGAAGGAAGCAC
TACTACACCTCCACGAGGCATGACTGCACGTGATCAGCCGTCTCACCACC
ATGTCACTGCTTCCGCGGAGGGGGCCAGGGTTAGGTTTGGCGAAAGGAGT
GCACCAAGAGAGGAAGAGCTGATTGCCGTCAAGATTTCCCTGGCGCAATC
CTTGGCGCATGCCGGAGAGCTGGAGGCCCAGATGCACGCCGGAGAGCTGG
AGGCCCAGATGCAC
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