mRNA_H-elongata_contig916.16619.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig916.16619.1 vs. uniprot
Match: D7FN50_ECTSI (Death domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN50_ECTSI) HSP 1 Score: 841 bits (2172), Expect = 1.350e-294 Identity = 458/756 (60.58%), Postives = 549/756 (72.62%), Query Frame = 1
Query: 1 LVVRLTERCRRAKENISDWDRRRGGDAGGGGSGAGVQVVGLPTDMHSSLKFSTKKNGLGKAAAEVATGFLPHYECVKERANAIRGVERCLSEFCMVWSTARLLESRATPDTKRDFLFHLKALLEHAPACDRHEAVLVLCRGLFTPSTGGIESELRHSVHSATFDREEGGYPLADSFREVYEGCSEHPRALRAARQAFPFLEILTRWAWRCHVPPEPASASSRDENGPGRITNRMQADYNDESTALERGTEIAPGVYGSYWGELETERADARGRGNTGIASLLVALAKADPSGETIRSMQRWACEALVPEQVGQAPWSAIGTSVDRNEVARCLVCTRETFVIWKETFHLKWMKSCREIGEVLRLLVSALDEERLDGGDLTSVVNHAMFVTTFLRSMPEGAKARRNYERLIGSGQVPGEEVSFSAERGARERVTSWREAAEVLDLNMASILRVSEKRVRSEEFRSALSSVFRRWRSPHALADFYNMHVQQKREARKISETRTWKYLRFLRALLNASDETLHDIRFMDPANTEHMQHMPEGVRRLWQAEPCILAGTSDPEVIFRMGEDTRSCMGIRRACCKTNGALLGYLLQGNVRFVGVQSAL-GRMEARAVLRLLLRADNMAAVLFMDEIYYSSQRDDALESQVVFEAKSVSDALGIPLYRAGDTLPRHPR-EEIRTPSCLSSHHDDGVDCGPVEETDIAKRS-KVCELIEVNGLSDFVYSDAPIGLLEKAGMLQREC-VPGQP-SRRRLVLAELAY 2253
+V RL++RCR + D+ + G G G + +G+P + SSLK+ KKNGLGKAA+E+A LP Y+C +ERA AIRGVERCLSEFC+VWSTARLL+S A TK DF+FHLK LLEH A DRHEAVLVLCRG+FTP +ES+ H V +A F + GG LA +F EV EG +EHPRALRAARQAFPFLE LTRW+WRC P E +S + E G G D N++ T R E RGR NTG+ASLLVALAKADPSGETI+SM RWA E L+PEQVG+APWSA GT DRNEVARCL+ TRE F ++ HL WM++CRE G+VL LLV LD++ L+G DLT VNHAMFVTTFLRSMPEGAKARR YERLIGSG+VPGE++SFSAERG+RERVTSW+EAA V+DL MAS+LRVSE ++R+E+FR ALSSV R WRSP LAD+YN +QQK RK+ Y+RFLRALL ASDE+LHD+RF DPAN + MQH+P R+LW+AEPC LAGT+DP VIFRMGEDTRSCMGI+R+C KTN LLGYL+QGNVRFVGVQS GRM+ARAVLR+L+R+DN AVLFMD+IYYSS RD +LE QV+ EAK+VSDALGIPL+RAGDT+PR P+ E+ + + LS GP +A+R KVC L+EVNGL+ FV+SDAP+ L+ AGML RE +PG RL+LAEL Y
Sbjct: 1 MVTRLSKRCR-------ELDKGGVINEGSGKKAGGGEFLGVPAGLGSSLKYCIKKNGLGKAASEIARDILPSYDCTRERAAAIRGVERCLSEFCIVWSTARLLDSHAESATKSDFVFHLKPLLEHTAARDRHEAVLVLCRGIFTPQNDVVESKWEHHVFAAVFQPKSGGSSLASAFAEVQEGSAEHPRALRAARQAFPFLEPLTRWSWRCRTP-ETSSTDNDGETGTG--------DVNEDDTKAGR----------------EGSGRRKRGRDNTGVASLLVALAKADPSGETIKSMMRWAIEGLMPEQVGEAPWSATGTLADRNEVARCLMSTREMFSDCRDARHLSWMRACREAGDVLSLLVGVLDDDGLEGEDLTREVNHAMFVTTFLRSMPEGAKARRGYERLIGSGRVPGEDMSFSAERGSRERVTSWKEAARVMDLGMASVLRVSEDKIRTEKFRQALSSVLRTWRSPQILADYYN--IQQKE--RKVMGN----YIRFLRALLGASDESLHDMRFRDPANAQQMQHLPARARQLWEAEPCTLAGTTDPCVIFRMGEDTRSCMGIQRSCIKTNRGLLGYLIQGNVRFVGVQSTRDGRMDARAVLRMLVRSDNKEAVLFMDKIYYSSNRDASLERQVIEEAKNVSDALGIPLFRAGDTVPRPPKMEDDKALAGLS---------GP--RAILARRKPKVCHLLEVNGLARFVHSDAPVAPLDTAGMLVREDPIPGTNYDIGRLILAELCY 705
BLAST of mRNA_H-elongata_contig916.16619.1 vs. uniprot
Match: A0A6H5LCB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCB0_9PHAE) HSP 1 Score: 635 bits (1637), Expect = 1.340e-211 Identity = 381/833 (45.74%), Postives = 477/833 (57.26%), Query Frame = 1
Query: 1 LVVRLTERCRRAKENISDWDRRRGGDAGGGGSGAGVQVVGLPTDMHSSLKFSTKKNGLGKAAAEVATGFLPHYECVKERANAIRGVERCLSEFCMVWSTARLLESRATPDTKRDFLFHLKALLEHAPACDRHEAVLVLCRGLFTPSTGGIESELRHSVHSATFDREEGGYPLADSFREVYEGCSEHPRALRAARQAFPFLEILTRWAWRCHVPPEPASASSRDENGPGRITNRMQADYNDESTALERGTEIAPGVYGSYWGELETERAD-----------ARGRGNTGIASLLVALAKADPSGETIRSMQRWACEALVPEQVGQAPWSAIGTSVDRNEVARCLVCTRETFVIWKETFHLKWMKSCREIGEVLRLLVSALDEERLDGGDLTSVVNHAMFVTTFLRSMPEGAKARRNYERLIGSGQVPGEEVSFSAERGARERVTSWREAAEVLDLNMASILRVSEKR--VRSEEFRSALSSVFRRWRSPHALADFYNMHVQQKREARKISETRTWKYLRFLRALLNASDETLHDIRFMDPANTEHMQHMPEGVRRLWQAEPCILAGTSDPEVIFRMGEDTRSCMGIRRACCKTNGALLGYLLQGNVRFVGVQSALGRMEARAVLRLLLRADNMAAVLFMDEIYYSSQRDDALESQVVFEAKSVSDALGIPLYRAGDTL------PRHPREEIRTPSCLSSHH------------DDGVDC----GPVEETDIAKRSKV-----------------------------------------------CELIEVNGLSDFVYSDAPIGLLEKAGMLQRECVPGQPSRRRLVLAELAY 2253
LV RL+ER R GA G P DM+SSLK+STKKNG+ +AAA+VA GF+P +E E+ IRGVERCL+EF +VWSTARLLE+ A P TKRDFLFHL+ LLEHAPA DRHE+VLVLCRGLFTP S + +VH +E GG PL ++F EV G E P LRAARQAFPF+E+LTRWAWRC + E + + + + + + R R +TG+ASLLV LAKADPSG TIRSMQRWACEA++PEQV AR ++CT E FV ++ +W K+CRE+G+V+RLLV A+DEE L G D+TS+VNHA+FVT FLRSMP G KAR+ YE L+ G+ PG ++ RV SWREAA +LD +AS+L+V + R +S+ F ALS++ W+SP+ALAD+Y MH + E K+ Y+RFL ALL S ET+ DIR DP+N EHM+H PE VRR W A+P LAGT DP+VIFRMG+DTRSCMGIRR+C N AL+GYLLQGN R VGVQS GRMEARAVLRLLLR DN+ VLFMD +YY+S D +LE QVV EA+SVS+ALGIPLYRAGD + P E R + + DDG + G V E +A+ +V CELIE++GLS +VYSD IG G++QR+ + S R++ LA+L Y
Sbjct: 82 LVARLSERAR----------------------GARAGEEGAPVDMYSSLKYSTKKNGVVRAAAQVAQGFVPKFESSYEKLVVIRGVERCLAEFTLVWSTARLLETCAPPKTKRDFLFHLRPLLEHAPARDRHESVLVLCRGLFTPGHNKEPSRVHDNVHGVALRQEHGGCPLEEAFSEVQRGAVETPGGLRAARQAFPFVEMLTRWAWRCKLSEEEEAFAGKRKKSVTKSFGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSREDTGVASLLVELAKADPSGATIRSMQRWACEAILPEQV-----------------ARGIICTHEIFVSGQKVQRQRWAKACREVGQVIRLLVGAMDEENLRGDDVTSMVNHALFVTAFLRSMPLGVKARKGYELLVAGGRTPGAVKGLELKQ-VSTRVASWREAALILDSGLASVLQVPQARSDAKSDAFGQALSTLLTTWQSPYALADYYVMHRKDP-EVLKV-------YVRFLLALLGLSGETVRDIRIRDPSNFEHMKHFPEDVRRQWHADPPTLAGTIDPQVIFRMGDDTRSCMGIRRSCSAQNRALMGYLLQGNARLVGVQSESGRMEARAVLRLLLRQDNLTPVLFMDSVYYASNLDSSLEQQVVAEAQSVSEALGIPLYRAGDKIAKVEPTPEEISERERQDAAADAAAAAWLEGEGGGAGDDGEEYDELQGRVFEVGVAEYREVDSGRAYGDXXXXXXXXXXXXXXXXXXXXXXXXDEGPLPPEDRESPEMCELIEMDGLSPWVYSDGAIGEATNPGVVQRD-LSHAGSVRKVALAQLEY 865
BLAST of mRNA_H-elongata_contig916.16619.1 vs. uniprot
Match: D7FXL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL8_ECTSI) HSP 1 Score: 612 bits (1577), Expect = 1.100e-202 Identity = 370/830 (44.58%), Postives = 466/830 (56.14%), Query Frame = 1
Query: 1 LVVRLTERCRRAKENISDWDRRRGGDAGGGGSGAGVQVVGLPTDMHSSLKFSTKKNGLGKAAAEVATGFLPHYECVKERANAIRGVERCLSEFCMVWSTARLLESRATPDTKRDFLFHLKALLEHAPACDRHEAVLVLCRGLFTPSTGGIESELRHSVHSATFDREEGGYPLADSFREVYEGCSEHPRALRAARQAFPFLEILTRWAWRCHVPPEPASASSRDENGPGRITNRMQADYNDESTALERGTEIAPGVYGSYWGELETER---------ADARGRGNTGIASLLVALAKADPSGETIRSMQRWACEALVPEQVGQAPWSAIGTSVDRNEVARCLVCTRETFVIWKETFHLKWM--------------KSCREIGEVLRLLVSALDEERLDGGDLTSVVNHAMFVTTFLRSMPEGAKARRNYERLIGSGQVPGEEVSFSAERGARERVTSWREAAEVLDLNMASILRVSEKRVRSEEFRSALSSVFRRWRSPHALADFYNMHVQQKREARKISETRTWKYLRFLRALLNASDETLHDIRFMDPANTEHMQHMPEGVRRLWQAEPCILAGTSDPEVIFRMGEDTRSCMGIRRACCKTNGALLGYLLQGNVRFVGVQSALGRMEARAVLRLLLRADNMAAVLFMDEIYYSSQRDDALESQVVFEAKSVSDALGIPLYRAGDTL------PRHPREEIRTPSCLSS------HHDDGVDCGPVEETD----------IAKRSKV----------------------------------------------------CELIEVNGLSDFVYSDAPIGLLEKAGMLQRE 2199
LV RL+ER R GA G P DM+SSLK+STKKNG+ +AAA+VA G +P +E E+ IRGVERCL+EF +VWSTARLLE+ A P+TKRDFLFHL+ LLE+APA DRHE+VLVLCRGLFTP S + +VH +E GG PL ++F EV G E P LRAARQAFPFLE+LTRWAWRC + E + + + + + + + R R +TG+ASLLV LAKADPSG TIRSMQRWACEA++PEQV W + L+ R T + W+E + K+CRE+G+V+RLLV A+DEE L G D+TS+VNHA+FVT FLRSMP G KAR+ YE L+ G+ PG ++ RV SWREAA +LD +AS+L+V + +S+ F ALS++ W+SP+ALAD+Y MH + E K+ Y+RFL ALL S ET+ DIR DP+N EHM+H PE VRR W A+P LAGT DP+VIFRMG+DTRSCMGIRR+C N AL+GYLLQGN R VGVQS GRMEARAVLRLLLR DNM VLFMD +YY+S D +LE QV EA+SVS+ALG+PLYRAGD + P E+ R + + + + G D VEE D +A+ +V CELIE++GLS +VYSD IG G++QR+
Sbjct: 61 LVARLSERAR----------------------GARAGEEGAPADMYSSLKYSTKKNGVARAAAQVAQGLVPKFESSYEKLVVIRGVERCLAEFSLVWSTARLLETCAPPETKRDFLFHLRPLLEYAPARDRHESVLVLCRGLFTPGHNKEPSRVHDNVHGVALRQEHGGCPLEEAFSEVQRGAVETPGGLRAARQAFPFLEMLTRWAWRCKLSEEEEAFAGKRKKSVTKSFGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGRSREDTGVASLLVELAKADPSGATIRSMQRWACEAILPEQV----WE------------KRLLKRRRTGMRWREASSARTKSSSPGRRSNGSAGPKACREVGQVIRLLVGAMDEENLRGDDVTSMVNHALFVTAFLRSMPLGVKARKGYELLVAGGRTPGAVKGLELKQ-VSTRVASWREAALILDSGLASVLQVPQSDAKSDAFGQALSTLLTTWQSPYALADYYVMHRKDP-EVLKV-------YVRFLLALLGLSGETVRDIRIRDPSNFEHMKHFPEDVRRQWHADPPTLAGTIDPQVIFRMGDDTRSCMGIRRSCSAQNRALMGYLLQGNARLVGVQSESGRMEARAVLRLLLRQDNMTPVLFMDSVYYASNLDSSLEQQVAAEAQSVSEALGVPLYRAGDKIAKVEPTPEEISEKERQDAAVHAAAAAWLEGEGGEDEDDVEEYDELQGRVFEVGVAEYREVDSGRAYGEXXXXXXXXXXXXXGHLTEDRAFQAGIAQYDEGPLPPEDREAPEMCELIEMDGLSPWVYSDGAIGEATNPGVVQRD 843
BLAST of mRNA_H-elongata_contig916.16619.1 vs. uniprot
Match: A0A7S3UU88_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU88_HETAK) HSP 1 Score: 103 bits (257), Expect = 1.550e-19 Identity = 78/272 (28.68%), Postives = 127/272 (46.69%), Query Frame = 1
Query: 823 NTGIASLLVALAKADPSGETIRSMQRWACEALVPEQVGQAPWSAIGTSVDRNEVARCLVCTRETFVIWKETFHLKWMKSCREIGEVLRLLVSALDEERLDGGDLTSVVNHAMFVTTFLRSMPEGAKARRNYERLIGSGQVPGEEVS---FSAERGARERVTSWREAAEVLDLNMASILRVSEKRVRSEEFRSALSSVFRRWRSPHALADFYNMHVQQKREARKISETRTWKYLRFLRALLNASDETLHDIRFMDPANTEHMQHMPEGVRRLW 1629
+T + LL L + + I+ +++WA + L+ V + + +NEVA L T + FV + W E G V+ L+ DG +L + VN F FL + G AR+NYE ++ +G++ ++ S + VT+ E VLD + + L + + E ++A++ + W PH LADFY H R+ ++IS+ ++RFLRALL+ SDET+ DIR P N + + RLW
Sbjct: 176 STRVVGLLQRLQRLENGATLIKGLRKWAVQFLLGPYVDDKN-ERLSEYLQQNEVALSLTTTYKIFVDGVKRDRQGWQLRVMEFGRVVLLMAEYAAAPGRDGAELGAAVNRFTFGAAFLSRLNPGTAARKNYE-MVATGRMGSNKLKTFLLSYKYPQAGSVTA-EEFLGVLDEGLGAALGAEPRAMGRPEAQAAMARLLESWAQPHQLADFYQFH----RKNKEISKL----FMRFLRALLHLSDETVQDIRLRAPENRAQLAGLSREALRLW 436 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig916.16619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig916.16619.1 >prot_H-elongata_contig916.16619.1 ID=prot_H-elongata_contig916.16619.1|Name=mRNA_H-elongata_contig916.16619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=709bp MHSSLKFSTKKNGLGKAAAEVATGFLPHYECVKERANAIRGVERCLSEFCback to top mRNA from alignment at H-elongata_contig916:5742..14573- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig916.16619.1 ID=mRNA_H-elongata_contig916.16619.1|Name=mRNA_H-elongata_contig916.16619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8832bp|location=Sequence derived from alignment at H-elongata_contig916:5742..14573- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig916:5742..14573- >mRNA_H-elongata_contig916.16619.1 ID=mRNA_H-elongata_contig916.16619.1|Name=mRNA_H-elongata_contig916.16619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4254bp|location=Sequence derived from alignment at H-elongata_contig916:5742..14573- (Himanthalia elongata Himel1 dioecious)back to top |