mRNA_H-elongata_contig90240.16512.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90240.16512.1
Unique NamemRNA_H-elongata_contig90240.16512.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig90240.16512.1 vs. uniprot
Match: A0A4D9DBJ1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBJ1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.340e-7
Identity = 44/152 (28.95%), Postives = 64/152 (42.11%), Query Frame = 1 
Query:    4 EKHGVAPDVVSYNSVISGHERAGEWREALALARQMERS-------------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLFEELTM------------SSDTSLTPDLYSYNTVMTFFSDSGMLPRALDLLEEAKARGLRPDVVTYRR 384
            E+HG+APD VS+ ++I    RAGEWR ALAL   ME +             E                             L L +E+ +            + D  ++  ++S  T++T    SG LPR L LLE  + +G+ PD+ TY R
Sbjct:  673 ERHGLAPDSVSFTTLIQACGRAGEWRRALALLHAMEGARGGEGRGQGEDGAEAGAWGEGMSEQAVLAAVEACAENGEVEEGLQLCQEILVRRLGPDRAREERTQDALVSAVIFS--TMITLACRSGALPRVLGLLETLREQGIAPDLATYTR 822
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90240.16512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4D9DBJ1_9STRA6.340e-728.95Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90240contigH-elongata_contig90240:1268..2420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931302.973308-CDS-H-elongata_contig90240:1267..14681622931302.973308-CDS-H-elongata_contig90240:1267..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90240 1268..1468 +
1691679780.7954068-CDS-H-elongata_contig90240:1267..14681691679780.7954068-CDS-H-elongata_contig90240:1267..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90240 1268..1468 +
1622931303.0246577-CDS-H-elongata_contig90240:2222..24201622931303.0246577-CDS-H-elongata_contig90240:2222..2420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90240 2223..2420 +
1691679780.8049955-CDS-H-elongata_contig90240:2222..24201691679780.8049955-CDS-H-elongata_contig90240:2222..2420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90240 2223..2420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90240.16512.1prot_H-elongata_contig90240.16512.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90240 1268..2420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90240.16512.1

>prot_H-elongata_contig90240.16512.1 ID=prot_H-elongata_contig90240.16512.1|Name=mRNA_H-elongata_contig90240.16512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
QEKHGVAPDVVSYNSVISGHERAGEWREALALARQMERSEGISPTVVTFN
SAIGACKRAGQPMEALAIALSLFEELTMSSDTSLTPDLYSYNTVMTFFSD
SGMLPRALDLLEEAKARGLRPDVVTYRRDKFC*
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mRNA from alignment at H-elongata_contig90240:1268..2420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90240.16512.1 ID=mRNA_H-elongata_contig90240.16512.1|Name=mRNA_H-elongata_contig90240.16512.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1153bp|location=Sequence derived from alignment at H-elongata_contig90240:1268..2420+ (Himanthalia elongata Himel1 dioecious)
CAGGAAAAACACGGGGTGGCCCCTGATGTGGTGAGTTACAATTCCGTCAT
CAGCGGCCACGAGCGAGCGGGCGAGTGGCGTGAGGCATTGGCCCTCGCCC
GTCAGATGGAGCGGTCGGAGGGTATCTCCCCGACCGTGGTGACGTTCAAC
TCGGCGATCGGCGCGTGCAAGCGAGCCGGGCAACCCATGGAGGCGTTGGC
CGTGCTTAGCCTGCTGCGCCAGAAAGGACTGCAACCCGACGTGATTAGTT
TCAACAGTGCCATGAGCGCCTGCGCCAGGTCAGAAAGGGGTACAGGCTGG
AGGTTTGTATTTAAAACAAGAACAAAACTTGATCGAGTAAAAGCACAGAG
CCCGCGTGAGCTTCAACGCGCTGTTAATCCATCAAATCGAATTGTGTCTC
TGCCGCCACCTCATACGGCCCCTGATATGTCGTCTTTGTCTGTTTTTTCC
CATTGACTGCATATATTTTCAAGCGGGGGAAAGTGGGAGGAGGCGCTTCA
GCTGTTAGATATCATGCCTTCGGAGGGTGTCAAGCCGGACTTGACGACCT
ACAACACCGCGTTGGACGCATGCGTCAAGGTGCCTTGACCCCCTAGCTAT
ATCCTGGCAGTATAACGAAAATATGGGCGCACTTCATGCCGCGTCGCGTG
TATCCTCCACGAGCTTCGCTGCCGTCATCCTCGCAAGATCTCTTTCCACT
CACAGGTTGAAATATGTTCTTGGGTCACTTCGCGCCAAACTCTCAATGGG
GCACAAACACCAAGGCCACCTGTGTTCTAGAAATCGTGCGTTTTGACGCA
TGCGACAGGGGCGGGGCGTTTCTTAACTTTTGTCTTTATTCAAGAGCCCT
CCCGCTCTCCTGCTACCCGACCCTTGGCCCTCAACCGCGATTGCCTTCGT
GTGCCTCGATCTGACGCGATATCGTCCACGAACGAAAAAGAGTGGTCAGT
GGGAGATAGCCCTGTCTCTGTTTGAAGAGCTGACGATGAGCTCGGATACC
TCTCTGACACCGGACCTGTACTCGTACAACACCGTAATGACGTTCTTCAG
CGACTCGGGCATGCTTCCTCGCGCACTCGACCTGCTCGAGGAGGCCAAGG
CCAGAGGGCTGAGGCCAGACGTTGTCACCTACAGGCGAGACAAGTTCTGC
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig90240:1268..2420+

>mRNA_H-elongata_contig90240.16512.1 ID=mRNA_H-elongata_contig90240.16512.1|Name=mRNA_H-elongata_contig90240.16512.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig90240:1268..2420+ (Himanthalia elongata Himel1 dioecious)
CAGGAAAAACACGGGGTGGCCCCTGATGTGGTGAGTTACAATTCCGTCAT
CAGCGGCCACGAGCGAGCGGGCGAGTGGCGTGAGGCATTGGCCCTCGCCC
GTCAGATGGAGCGGTCGGAGGGTATCTCCCCGACCGTGGTGACGTTCAAC
TCGGCGATCGGCGCGTGCAAGCGAGCCGGGCAACCCATGGAGGCGTTGGC
CCAGGAAAAACACGGGGTGGCCCCTGATGTGGTGAGTTACAATTCCGTCA
TCAGCGGCCACGAGCGAGCGGGCGAGTGGCGTGAGGCATTGGCCCTCGCC
CGTCAGATGGAGCGGTCGGAGGGTATCTCCCCGACCGTGGTGACGTTCAA
CTCGGCGATCGGCGCGTGCAAGCGAGCCGGGCAACCCATGGAGGCGTTGG
CCATAGCCCTGTCTCTGTTTGAAGAGCTGACGATGAGCTCGGATACCTCT
CTGACACCGGACCTGTACTCGTACAACACCGTAATGACGTTCTTCAGCGA
CTCGGGCATGCTTCCTCGCGCACTCGACCTGCTCGAGGAGGCCAAGGCCA
GAGGGCTGAGGCCAGACGTTGTCACCTACAGGCGAGACAAGTTCTGCTGA
ATAGCCCTGTCTCTGTTTGAAGAGCTGACGATGAGCTCGGATACCTCTCT
GACACCGGACCTGTACTCGTACAACACCGTAATGACGTTCTTCAGCGACT
CGGGCATGCTTCCTCGCGCACTCGACCTGCTCGAGGAGGCCAAGGCCAGA
GGGCTGAGGCCAGACGTTGTCACCTACAGGCGAGACAAGTTCTGCTGA
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