mRNA_H-elongata_contig90174.16505.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90174.16505.1
Unique NamemRNA_H-elongata_contig90174.16505.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig90174.16505.1 vs. uniprot
Match: D8LBM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.370e-26
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 AGFLPVISMAGSIVQHCEVATSNNGWVIEVVNPETNTTLWLDPANPTGLLRWGSVLCQSL-LEGKRGEEDE 210
            AGF+P+I++ G+ +QHCEVA SNNGW+IEVVNP  N TLWLDP N T LLRWGSVLCQ+L  E   GEEDE
Sbjct:  339 AGFMPLIALEGAAIQHCEVANSNNGWIIEVVNPSENVTLWLDPENATALLRWGSVLCQALQTERYDGEEDE 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90174.16505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBM8_ECTSI1.370e-2669.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90174contigH-elongata_contig90174:2086..2298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_003380.1
Exons1
Model size213
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931302.0239704-CDS-H-elongata_contig90174:2085..22741622931302.0239704-CDS-H-elongata_contig90174:2085..2274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90174 2086..2274 -
1691679780.3909574-CDS-H-elongata_contig90174:2085..22741691679780.3909574-CDS-H-elongata_contig90174:2085..2274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90174 2086..2274 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931302.0424068-UTR-H-elongata_contig90174:2274..22981622931302.0424068-UTR-H-elongata_contig90174:2274..2298Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig90174 2275..2298 -
1691679780.4092176-UTR-H-elongata_contig90174:2274..22981691679780.4092176-UTR-H-elongata_contig90174:2274..2298Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig90174 2275..2298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90174.16505.1prot_H-elongata_contig90174.16505.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90174 2086..2274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90174.16505.1

>prot_H-elongata_contig90174.16505.1 ID=prot_H-elongata_contig90174.16505.1|Name=mRNA_H-elongata_contig90174.16505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MAGSIVQHCEVATSNNGWVIEVVNPETNTTLWLDPANPTGLLRWGSVLCQ
SLLEGKRGEEDE*
back to top

mRNA from alignment at H-elongata_contig90174:2086..2298-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90174.16505.1 ID=mRNA_H-elongata_contig90174.16505.1|Name=mRNA_H-elongata_contig90174.16505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig90174:2086..2298- (Himanthalia elongata Himel1 dioecious)
GCTGGATTTCTTCCGGTGATCTCCATGGCCGGATCGATCGTGCAGCACTG
CGAGGTGGCCACCTCCAACAATGGCTGGGTTATTGAAGTCGTCAACCCGG
AAACGAACACAACCCTCTGGCTCGATCCAGCCAATCCTACCGGTCTGCTT
CGGTGGGGCTCGGTCTTGTGCCAGTCTCTGCTGGAAGGCAAGAGAGGAGA
GGAGGACGAATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig90174:2086..2298-

>mRNA_H-elongata_contig90174.16505.1 ID=mRNA_H-elongata_contig90174.16505.1|Name=mRNA_H-elongata_contig90174.16505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig90174:2086..2298- (Himanthalia elongata Himel1 dioecious)
ATGGCCGGATCGATCGTGCAGCACTGCGAGGTGGCCACCTCCAACAATGG
CTGGGTTATTGAAGTCGTCAACCCGGAAACGAACACAACCCTCTGGCTCG
ATCCAGCCAATCCTACCGGTCTGCTTCGGTGGGGCTCGGTCTTGTGCCAG
TCTCTGCTGGAAGGCAAGAGAGGAGAGGAGGACGAATAAATGGCCGGATC
GATCGTGCAGCACTGCGAGGTGGCCACCTCCAACAATGGCTGGGTTATTG
AAGTCGTCAACCCGGAAACGAACACAACCCTCTGGCTCGATCCAGCCAAT
CCTACCGGTCTGCTTCGGTGGGGCTCGGTCTTGTGCCAGTCTCTGCTGGA
AGGCAAGAGAGGAGAGGAGGACGAATAA
back to top