mRNA_H-elongata_contig9016.16503.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9016.16503.1
Unique NamemRNA_H-elongata_contig9016.16503.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: D7G1M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M4_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 4.160e-125
Identity = 226/332 (68.07%), Postives = 245/332 (73.80%), Query Frame = 1
Query:   25 LLGPAERSERRYLRNHQDVDDEVVSASARAGDTGEGEGRGVNQGSSGGGQGKDGGD--VVDIDQTIDRYDYLIAFPNPLD-----GGTGRRR----LEGGEESDDRDSDATE-EDVRRITLAEVTDIWYSAVPGDEVAKTAAKESITREWEARFRTPSNNSEEVSISRSEWSRLARDVIVNTLFAKSGLQLKLTLSRQRDRVLCQIRAPITLLEREAAREKYRLQFRGEVDPGEDFWTEEEIAEEQRLYGKDEANETLEKLFQAGFCCRFRCQAEKISPNDLAVFDEEAVPNQWSRRVHTLERIADRVPVTNRFPVYAEYRNEDKHLHLCQA 984
            LLGPAERSERR+LRN+ D+DD +       G                    +DGG+  V DIDQTIDRYDYLIAFP+P +     GG GRR     +  GE SDD DSD    E  +RITL EV DIWYSAVPGDEV KTAAKES+ REWEARFRTPS +SEEVSIS+SEW RLAR+VIVNTLF KSGLQLKLTLSR  D+VLC+IRAPI LLER+AARE YRLQFRGEVDPGE FWTE+EIAEE RLYGKDEANETLEKLFQA          EKISPNDLAVFDEE  PNQWSRR H LERIADRVPV NRFP YAEY N+DKH HL Q 
Sbjct:   43 LLGPAERSERRFLRNY-DLDDGITQGGGIPGGXXXXXXXXXXXXXXXXXXERDGGNDGVADIDQTIDRYDYLIAFPHPREQAARAGGRGRRSELSAVGDGEGSDDSDSDTGGFEAAQRITLTEVNDIWYSAVPGDEVTKTAAKESLAREWEARFRTPSADSEEVSISQSEWVRLAREVIVNTLFEKSGLQLKLTLSRHGDKVLCRIRAPIVLLERQAARESYRLQFRGEVDPGETFWTEDEIAEELRLYGKDEANETLEKLFQA----------EKISPNDLAVFDEEVAPNQWSRRTHALERIADRVPVVNRFPAYAEYTNDDKHRHLFQT 363          
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: A0A835YL56_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL56_9STRA)

HSP 1 Score: 302 bits (773), Expect = 2.830e-89
Identity = 184/359 (51.25%), Postives = 229/359 (63.79%), Query Frame = 1
Query:   22 RLLGPAERSERRYLRNH----------QDVDDEV---VSASARAGDTGEGEGRGVNQGSSGGGQGKDGGDVVDIDQ-TIDRYDYLIAFPNPLDGGTGRRRL--------EGGEESDDRDSDATEEDVRRITLAEVTDIWYSAVPGDEVAKTAAKESITREWEARFRTPSN-----NSEEVSISRSEWSRLARDVIVNTLFAKSGLQLKLTLSRQRDRVLCQIRAPITLLEREAAREKYRLQFRGEVDPGEDFWTEEEIAEEQRLYGK-----------DEANETLEKLFQAGFCCRFRCQAEKISPNDLAVFDEEAVPNQWSRRVHTLERIADRVPVTNRFPVYAEYRNEDKHLHLCQA 984
            R+L P ER+ERRY+R++           D+D E    ++ S+  G    G  RG +              V    Q T+DRYDYLI FPNP +    R R         +GG  +   D+DA E     ITL EV +IWYSAVPGDEVAK  A++ + RE++ARFRTP+       S E+++SR+EW RLAR+VI+NTL+AKSGLQLKLT+SR   +VLC++RAP+ LLE++AARE YRLQFRGEVDPG DFWTEEEIAEEQRLY K           DEANE LEKL+QA          EKISPND+AVFD+E     +SRR+HTLERIADRVPVTNR+P Y+E+  + K  HL QA
Sbjct:  765 RILNPLERTERRYMRSYGHAEEAAADFADIDQEAAADIAVSSTGGACAVGSARGASN-------------VPKFLQLTVDRYDYLIIFPNPAEDKKSRYRDVEEACSAGDGGARTHAGDADAGEAGTF-ITLGEVAEIWYSAVPGDEVAKHEAQDKLRREFDARFRTPAEFSNLEESREMTMSRNEWLRLAREVIINTLYAKSGLQLKLTVSRDGSKVLCRVRAPVALLEQQAAREGYRLQFRGEVDPGYDFWTEEEIAEEQRLYSKGKANELSMYALDEANELLEKLYQA----------EKISPNDIAVFDQEPTDKHFSRRLHTLERIADRVPVTNRYPAYSEFTLDGKDRHLYQA 1099          
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: A0A8J2SE39_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SE39_9STRA)

HSP 1 Score: 198 bits (503), Expect = 3.240e-53
Identity = 117/277 (42.24%), Postives = 162/277 (58.48%), Query Frame = 1
Query:  190 DVVDIDQTIDRYDYLIAFPNPLDGGTGRRRLEGGEESDDRDSDATEEDVRRITLAEVTDIWYSAVPGDEVAKTAAKESITREWEARFRTPSNNSEEV--SISRSEWSRLARDVIVNTLFAKSGLQLKLTLSRQRDRVLCQIRAPITLLEREAAREKYRLQFRGEVDPGEDFWTEE------------EIAEEQRLYGKDEANETLEKLFQAGFCCRFRCQAEKISPNDLAVFDE-EAVPNQWSRRVHTLERIADRVPVTNRFPVYAEYRNEDKHLHL 975
            D V  D T D+YD+L+ FP P                   D D +E +  RI+  ++  +W+ A+PGDE  KTA  E + +EW +RFRT + +S E   ++  +    L R+ +V+ L  K+GLQL+LTL++   +V C++RAP+ LLER+A    ++L+FRGEVDPG +FW +             EI EE  LY K++ANE LE L++AG          K+ PND AVFDE E     WSRRVHTLERIADRVPVTNRFP +A++    +  HL
Sbjct:   42 DGVQFDPTCDKYDFLLVFPRP-------------------DDDESEAEGDRISWCQIETLWFQAIPGDEDRKTAGIEWLRQEWVSRFRTDTVSSAEGGDTVPLTALQGLVREHVVDRL-TKAGLQLELTLAQDGSKVFCRVRAPMALLERKADELNHKLKFRGEVDPGPEFWRKSADQDAEGKPIFCEIVEESILYEKNQANELLEDLYRAG----------KVGPNDAAVFDEAEPTKKHWSRRVHTLERIADRVPVTNRFPAHADFTTAPESRHL 288          
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: A0A7S3NJZ7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJZ7_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.120e-44
Identity = 107/278 (38.49%), Postives = 157/278 (56.47%), Query Frame = 1
Query:  190 DVVDIDQTIDRYDYLIAFPNPLDGGTGRRRLEGGEESDDRDSDATEEDVRRITLAEVTDIWYSAVPGDEVAKTAAKESITREWEARFRT-PSNNSEEVSIS-RSEWSRLARDVIVNTLFAKSGLQLKLTLSRQRDRVLCQIRAPITLLEREAAREKYRLQFRGEVDPGEDFWTEE-------------EIAEEQRLYGKDEANETLEKLFQAGFCCRFRCQAEKISPNDLAVFDEEAVPNQ-WSRRVHTLERIADRVPVTNRFPVYAEYRNEDKHLHL 975
            D    D T D+YDYLI F N       ++++      DD   +  +E+  +I    + ++W  A+PG+E  K   ++ +   W+ RF + P+ +SEE+ +  +SE   L RD I++ L  KSGLQLKL+LS    +  CQ+RAP++LLER+A + +Y+L+F+ E+DPG  FW                E+ EEQRL  KDE NE L  L++ G          KI P+D++VFDEE    + WSRR+ TLERI D+VP TN +P YA +  + K  HL
Sbjct:   38 DAAAFDPTADKYDYLIVFKNDKP----KKKIS---HYDDEGQEQHKEE-EKIKWEWLENVWLEAIPGEEDKKEKGRDYLKFLWQQRFGSLPNEDSEEIDMQPKSEIELLVRDHIIDVLSRKSGLQLKLSLSANGRKQYCQVRAPMSLLERKATQLEYKLKFKPEIDPGPAFWQRTDGTYDRAGRPRYIELIEEQRLTSKDETNEALAILYKLG----------KIGPHDMSVFDEEETTEKHWSRRLRTLERIVDKVPCTNEYPAYASFTGKPKERHL 297          
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: A0A8J2S5F9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5F9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 8.830e-38
Identity = 103/281 (36.65%), Postives = 140/281 (49.82%), Query Frame = 1
Query:  190 DVVDIDQTIDRYDYLIAFPNPLDGGTGRRRLEGGEESDDRDSDATEEDVRRITLA--EVTDIWYSAVPGDEVAKTAAKESITREWEARFRTPSNNSEEVSISRSEWSRLARDVIVNTLFAKSGLQLKLTL-SRQRDRVLCQIRAPITLLEREAAREKYRLQFRGEVDPGEDFWTE-------------EEIAEEQRLYGKDEANETLEKLFQAGFCCRFRCQAEKISPNDLAVF-DEEAVPNQWSRRVHTLERIADRVPVTNRFPVYAEYRNEDKHLHLCQ 981
            DV   D T D++DYL+ F                         ATE      TL   EV + W+ A+PGDE  KTA  E + R+W  RF       EE    + +   L R+ +V+ L  +SGLQLKL+L S    RV CQ+RAP++LLER+A    Y+ +F+ E+DPG  FW               +EI E+  +  +++A ETL++L+  G C           P D+AVF D E  P  WSRRVH LERI+DRVP  N +  YA Y    +  HL +
Sbjct:   39 DVAAFDPTADKHDYLLVF-------------------------ATERSRSSETLKWNEVRETWFQAIPGDEEKKTAGVELLRRDWVQRF------GEEEECPKGDVLGLCREHVVDLLARRSGLQLKLSLPSDGARRVYCQLRAPVSLLERKADALDYKFKFKDEIDPGPAFWRRSSGTDRVSGRPVYDEIIEDATILDREKAQETLQQLYAQGRC----------GPADVAVFADAEPTPRHWSRRVHALERISDRVPCHNAYAAYAPYDAAPRERHLYE 278          
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: A0A7S2DV50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DV50_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.530e-31
Identity = 86/223 (38.57%), Postives = 126/223 (56.50%), Query Frame = 1
Query:  361 TDIWYSAVPGDEVAKTAAKESITREWEARFRTPSNNSEEVSISRSEWSRLARDVIVNTLFAKSGLQLKLTLSRQRD-------RVLCQIRAPITLLEREAAREKYRLQFRGEVDPGEDFWT---------EEEIAEEQRLYGKDEANETLEKLFQAGFCCRFRCQAEKISPNDLAVFDEEAVPNQWSRRVHTLERIADRVPVTNRFPVYAEY--RNEDKHLHL 975
            +D WY+A+PG+   K  A  ++ + W   F    +  E  SI  S++  L R+ I++ L  +SGLQLKL+ SR+RD       ++ C+IRAPI+LLE+ A    Y+L  R EVDPG +FW+         EE  A+   +  K EA   LE +++ G           ISPND+ +F++E  P  WSRR+ TLERIAD+VPV+ R   YA +  R  ++HL +
Sbjct:   50 SDEWYNAIPGETDRKNKAVLALKQAW-MDFTGNDDVHETTSIEFSKFLELTRNHIIDILMNRSGLQLKLS-SRKRDANGETAEKIFCRIRAPISLLEKRADDLDYKLMLRPEVDPGTEFWSVKNKQTGAYEEIEADANLIESKGEAAGLLETMYENGH----------ISPNDVQIFEDEPTPKHWSRRIRTLERIADKVPVSTRMHPYANFTLRPAERHLFM 260          
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: A0A7S2Y002_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y002_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.960e-30
Identity = 76/170 (44.71%), Postives = 101/170 (59.41%), Query Frame = 1
Query:  442 ARFRTPSNNSEEVSISRSEWSRLARDVIVNTLFAKSGLQLKLTLSRQRDRVLCQIRAPITLLEREAAREKYRLQFRGEVDPGEDFWT-------EEEIAEEQRLYGKDEANETLEKLFQAGFCCRFRCQAEKISPNDLAVFDEEAVPNQWSRRVHTLERIADRVPVTNRF 930
            ARFR     ++  +I   +W  L+R+V+++ L  +SGLQ+K+TLSR +  V C++RAP   L  +A  + +RLQF  EVDP  +FW        E EI EEQ+L  +D ANE LEK + AG          KI PNDLAVF++E    QWS R+HTLERI D V    RF
Sbjct:    2 ARFRVTRPEADH-TIPMEDWLSLSREVVISVLAEQSGLQMKVTLSRDKRYVYCRLRAPARSLMFQADVDNHRLQFCPEVDPSYEFWDPTNKRDEENEILEEQKLVDRDTANERLEKYYDAG----------KIGPNDLAVFEDET-QLQWSTRLHTLERIMDEVTAEPRF 159          
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: A0A7S2BNC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNC7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.780e-15
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  652 YRLQFRGEVDPGEDFWTEE------------EIAEEQRLYG-KDEANETLEKLFQAGFCCRFRCQAEKISPNDLAVFDEEAVPNQWSRRVHTLERIADRVPVTNRFPVYAEYRNEDKHLHL 975
            YRLQFR EVDPG DFW  +            EI  E++L   K  A E LE++++ G+          I  +++ +F++EA P  WSRR+HTLERIAD++P  NR+  YA++       HL
Sbjct:    6 YRLQFRPEVDPGPDFWQVQKPGIQDEEEKFVEIKNEEKLLATKAGAAEHLEQMYKNGY----------IHASEVHIFEDEATPKHWSRRIHTLERIADKIPSCNRWNAYADFSTRPTERHL 116          
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: A0A024U2L3_9STRA (C2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2L3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.290e-6
Identity = 66/286 (23.08%), Postives = 113/286 (39.51%), Query Frame = 1
Query:  205 DQTIDRYDYLIAFPNPLDGGTGRRRLEGGEESDDRDSDATEEDVRRITLAEVTDIWYSAVPGDEVAKTAAKESITREWEARFRT-PSNNSEEVSISRSEWSRLARDVIVNTLFAKSGLQL-KLTLSRQRDR---------------VLCQIRAPITLLEREAAREKYRLQFRGEVDPGEDFWTEEEIAEEQRLYGKDEANETLEKLFQAGFCCRFRCQAEKISPNDLAVFDEEAVPNQWSRRVHTLERIADRVPVTNRFP---VYAEYRNED------KHLHLCQA 984
            D     Y Y + FPN                      D  +    RI+ A+   I      G E  K  A     + W  +FR+ P  + + + +    +  L R++++  L +  G+ L   T +   DR               + C +R    LL R+A +    +    E+DPG ++W   ++   + ++  DEA   L ++F  G          +I  ++  +F  E+ P   SRR+H ++RIADR   T   P   +Y  +RN+       +H+  CQA
Sbjct:   32 DVNFSEYYYALVFPNTP-------------------HDLADVAGERISFADAKTIIRDVTCGGEANKAHAVNEFIQAWVDKFRSVPPIDVDTIPVG--YFRELMRNIVIQRLESLPGISLVTFTSASTIDRSAQLQPGDDTTDAKYIYCLLRVSRELLYRQADQSNILVPIWPEIDPGSEYW---DLHGPESVWTIDEAERELNRMFLQG----------EIQADEAQLFPNES-PAMVSRRIHAIQRIADRTIQTCYRPSPHMYFAFRNDPAFQYLYRHVESCQA 282          
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Match: W4GHV2_9STRA (C2 domain-containing protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GHV2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.200e-5
Identity = 68/282 (24.11%), Postives = 111/282 (39.36%), Query Frame = 1
Query:  223 YDYLIAFPNPLDGGTGRRRLEGGEESDDRDSDATEEDVRRITLAEVTDIWYSAVPGDEVAKTAAKESITREWEARFRTPSNNSEEVSISRSEWSRLARDVIVNTLFAKSGLQLKLTLS------------------RQRDRVLCQIRAPITLLEREAAREKYRLQFRGEVDPGEDFWTEEEIAEEQRLYGKDEANETLEKLFQAGFCCRFRCQAEKISPNDLAVFDEEAVPNQWSRRVHTLERIADRV--PVTNRFP-VYAEYRNEDKHLHL-------CQA 984
            Y Y + FPN                      D T+    RI+ A+   I      G E  KT A     + W  +FR+ S    + +I    +  L R++++  L +  GL L    S                     + + C IR    LL ++A      +    EVDPG ++W   +I   + ++  D+A   L ++F  G          +   ++  +FD+E+ P   SRR+H ++RIADR   P  +  P +Y  +RN   + +L       CQA
Sbjct:   39 YYYTLVFPNTP-------------------HDLTDVAGERISFAQAKAIIREVTCGGEANKTHAVNEFIQAWVEKFRSVSPIDVD-TIPVGYFRELMRNIVIQRLESIPGLSLVTFTSSSSSETKGNLVEPPKESNNDAEYIYCLIRVSRDLLFQQADLHNLLVPIWPEVDPGSEYW---DIHGPETVWTVDDAERELNRMFLQG----------ETQADEAQLFDDES-PAMVSRRIHAIQRIADRSIQPCYHPSPHLYFPFRNHPAYQYLYRHLESSCQA 286          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9016.16503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G1M4_ECTSI4.160e-12568.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL56_9STRA2.830e-8951.25Calcium-activated chloride channel-domain-containi... [more]
A0A8J2SE39_9STRA3.240e-5342.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NJZ7_9STRA1.120e-4438.49Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2S5F9_9STRA8.830e-3836.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2DV50_9STRA3.530e-3138.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2Y002_9STRA3.960e-3044.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2BNC7_9STRA1.780e-1539.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A024U2L3_9STRA5.290e-623.08C2 domain-containing protein n=2 Tax=Aphanomyces i... [more]
W4GHV2_9STRA2.200e-524.11C2 domain-containing protein n=12 Tax=Aphanomyces ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9016contigH-elongata_contig9016:3481..6884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.7
Seed ortholog evalue3.2e-109
Seed eggNOG ortholog2880.D7G1M4
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2514@1,KOG2514@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnoctamin
Ec32 orthologEc-26_000980.1
Exons8
Model size985
Cds size984
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9016.16503.1prot_H-elongata_contig9016.16503.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9016 3481..6884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931301.7523093-CDS-H-elongata_contig9016:3480..36831622931301.7523093-CDS-H-elongata_contig9016:3480..3683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 3481..3683 -
1691679780.245569-CDS-H-elongata_contig9016:3480..36831691679780.245569-CDS-H-elongata_contig9016:3480..3683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 3481..3683 -
1622931301.7742302-CDS-H-elongata_contig9016:4155..42611622931301.7742302-CDS-H-elongata_contig9016:4155..4261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 4156..4261 -
1691679780.2554367-CDS-H-elongata_contig9016:4155..42611691679780.2554367-CDS-H-elongata_contig9016:4155..4261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 4156..4261 -
1622931301.7908258-CDS-H-elongata_contig9016:4637..47211622931301.7908258-CDS-H-elongata_contig9016:4637..4721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 4638..4721 -
1691679780.270888-CDS-H-elongata_contig9016:4637..47211691679780.270888-CDS-H-elongata_contig9016:4637..4721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 4638..4721 -
1622931301.8106954-CDS-H-elongata_contig9016:5025..51391622931301.8106954-CDS-H-elongata_contig9016:5025..5139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 5026..5139 -
1691679780.2790635-CDS-H-elongata_contig9016:5025..51391691679780.2790635-CDS-H-elongata_contig9016:5025..5139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 5026..5139 -
1622931301.8286564-CDS-H-elongata_contig9016:5314..54341622931301.8286564-CDS-H-elongata_contig9016:5314..5434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 5315..5434 -
1691679780.2871828-CDS-H-elongata_contig9016:5314..54341691679780.2871828-CDS-H-elongata_contig9016:5314..5434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 5315..5434 -
1622931301.847296-CDS-H-elongata_contig9016:5679..57571622931301.847296-CDS-H-elongata_contig9016:5679..5757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 5680..5757 -
1691679780.2949946-CDS-H-elongata_contig9016:5679..57571691679780.2949946-CDS-H-elongata_contig9016:5679..5757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 5680..5757 -
1622931301.8666868-CDS-H-elongata_contig9016:6190..63391622931301.8666868-CDS-H-elongata_contig9016:6190..6339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 6191..6339 -
1691679780.3123221-CDS-H-elongata_contig9016:6190..63391691679780.3123221-CDS-H-elongata_contig9016:6190..6339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 6191..6339 -
1622931301.8808472-CDS-H-elongata_contig9016:6754..68841622931301.8808472-CDS-H-elongata_contig9016:6754..6884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 6755..6884 -
1691679780.3255754-CDS-H-elongata_contig9016:6754..68841691679780.3255754-CDS-H-elongata_contig9016:6754..6884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 6755..6884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9016.16503.1

>prot_H-elongata_contig9016.16503.1 ID=prot_H-elongata_contig9016.16503.1|Name=mRNA_H-elongata_contig9016.16503.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=328bp
MTQGRRARLLGPAERSERRYLRNHQDVDDEVVSASARAGDTGEGEGRGVN
QGSSGGGQGKDGGDVVDIDQTIDRYDYLIAFPNPLDGGTGRRRLEGGEES
DDRDSDATEEDVRRITLAEVTDIWYSAVPGDEVAKTAAKESITREWEARF
RTPSNNSEEVSISRSEWSRLARDVIVNTLFAKSGLQLKLTLSRQRDRVLC
QIRAPITLLEREAAREKYRLQFRGEVDPGEDFWTEEEIAEEQRLYGKDEA
NETLEKLFQAGFCCRFRCQAEKISPNDLAVFDEEAVPNQWSRRVHTLERI
ADRVPVTNRFPVYAEYRNEDKHLHLCQA
back to top

mRNA from alignment at H-elongata_contig9016:3481..6884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9016.16503.1 ID=mRNA_H-elongata_contig9016.16503.1|Name=mRNA_H-elongata_contig9016.16503.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3404bp|location=Sequence derived from alignment at H-elongata_contig9016:3481..6884- (Himanthalia elongata Himel1 dioecious)
ATGACGCAAGGTCGAAGGGCTCGATTACTTGGCCCAGCCGAACGGTCCGA ACGGCGATACCTCCGCAACCATCAAGATGTTGACGACGAGGTCGTCAGTG CCAGCGCACGTGCCGGTGACACGGGCGAAGGTAAAGAAGGCGGAAAGAGC GGTGGCGGAATGCGTGGGACAGGTGGGACAAATGTCAAATATTATTATAT GCGCCTTCCATGTTGCCTCATGAACGGAGCGCGCGATATCAACCAGACGG CCGCGTTGGCGCAGAACATCGGGGCGCAACCCAAACCCTGCGCGTGGTGG CCGCCCCAATCTCTGAAGAAATAAGCAAGTGGATTAGGCGGAAAATGTTA TCTCATTTTGGTTTCATACTGAAACGTACTCGGTCGTTTAACACGATTGG TATCTGTCGCTGCCTTCTTGGTCGCCAAGTGCTTCGCGGAGAAAATGCGT TGTGACTCAAGATTTTAACCTCCGTTTTAGTAGCTCGAATGACCAGTGAA AGGGATGTTGATGTTTTAGCAAGACCGTATTCTCTCTCTTCGCAGGCGAA GGAAGAGGTGTAAATCAAGGAAGCTCCGGCGGTGGCCAAGGGAAAGACGG AGGTGATGTCGTCGATATCGACCAGACAATCGACCGCTACGACTACCTCA TCGCGTTTCCTAACCCTCTAGATGGTGGCACGGGACGAAGACGGGTAGGA AGCGACGACGAGGATTCGAGAGAGGTGCGAAGGCTTGGATATGAAAGCAA TGCTAGGTGCTTAGGCTCGGTGTAATTGCTTGTATTTGACGTCTAACTGC CTCGGTTTGATATAACTGCCTGTTTTCAGGCATCTTACTGCCTCAACTTG GAATCACGGCTTCTTCTATGAGGAGTTGAAGGCACTCACAAACAGGGTAC GAGGCAACAAAGTGCACCTGATGTTTCGTCGTCCATCTCCCCCCCTATCG ATCTCAACATTCGTCGCACGATGTGGACTCTCCTGGTTCTCACGGCTCGC TCCGTGTCGTCTCGGCAGCTGACAACCTTAACGCCCCCACCCCGCGCTGC TTTCCCTCTACATCATATCGCTTGCTTTGACGTTCACTCTTAAGCTTCCT TTAGAAAGAGATGACTACTACGCAGAGTTAGAAGGGGGTGAGGAAAGCGA CGACCGCGACAGCGACGCCACCGAGGAAGATGTCAGGCGTATCACGCTAG CCGAGGTAGGTGGAGTCACGATGTAGACATTGTTTCAAACTCAAAACATT TTTTTTCGGGTGTTTGGTAATGATGATCATATACCCTCTGCGTCCAGCTC ACACTTGCTGATATTGGAAACGTGTTTTCCACTTTTATTGGGAATCGTAC TATGGTTCAGTCCAGGAGTACCTCCGCAACACCAAATTTACTATACCATC GTCATTTTTCTATGTGTAAAGCCGACCAAAAAGATACAACATTTCGTCAG GTGACCGACATCTGGTACTCTGCCGTGCCGGGAGATGAGGTCGCTAAAAC CGCCGCCAAGGAAAGCATCACGCGGGAATGGGAGGCGAGATTTCGGACCC CCAGCAACAACTCAGAGGAGGTACTTCACTCTGCCCTCGAAGGGACGCCG TTGCGTCGCGCCTTGCTCAGAGTTGTATATTTGCCTGTACGAAGGTACCG TCGTGTACCGCCGCCAACGCTTTACGCTGAATTTCTAATTGTTTTTTTTT TATGCTGGGCACATGCCTTCAGAGTTCATTCACTTTCCACCTCAGGTTTC GATATCTCGATCGGAGTGGTCCAGGCTAGCGCGCGACGTGATCGTTAACA CGCTGTTCGCTAAGTCGGGGCTTCAGCTGAAGCTGACGCTGTCGCGGCAA AGAGACCGGGTGAGCGCCACGCGACCCTTCTTCATCCCGCCCAGCTGTAC GCCACCGTCTCGTCAGGCTTGGACGCCACCCAAGCCGAAGAGCATTGAAC TAACGAAACTCCCGAAGGCCTGTGTCTCAATCATTCCCTTTTGCTCCAAA GACTGAATCGATACCAGTTCTGAATTCTAACATAGAAAAGTTAGTATCTC TGCTTCTGCAACGAAGTCCGAATCTGCAAATACAGCGAACACTTTGCTTG CAGCCACTCGCATCTCCGTTCTTACGTTTGGTGTGCCCAATTAATTTTTT GGGGGGGGGACAGGTACTCTGTCAGATCCGTGCTCCTATCACGCTGCTGG AGAGAGAAGCGGCGCGGGAGAAGTACCGGCTTCAGTTTCGCGGGGAGGTC AGTGCGTCAGTACGTTTCGCGAGGGGATATCTCACGAATTGCCTTTGTCT CTATGTCGAGTTGCCAGTCTCTCTAGCTCGTCCAGCACCCTGCAGTAAAA TCTTTGGGGTAACGAGGGTTCTTCGTCGGAGGGTCGAACGAACCTGACAC CACGGAATACGATGAAAGCTGTCAGCAACAGGACCGGCCATAACTCTGCG TGCAAGTGACAATCGGATGGACGTAAGCAATTGAGACCTGCACTGCTACA CCTCGTGTCTTCAAGCACTCATGAGTGCGCAGCGCGGCCACGCAAAACTT AAGTTTGTTTTCGTTTAACAAGTGCACTTGTGTGTGCGCGCGCTCTCGTC CGATGTTGCCGTGGCTCCTAAAGGTTGATCCCGGGGAAGATTTCTGGACG GAAGAGGAGATCGCGGAAGAACAAAGATTATACGGAAAGGACGAGGCAAA CGAAACGCTTGAGAAGCTTTTCCAGGCAGGTCAAGGAAGTTACGCGTGTT GTCTTTGTTATAAGAAGTCTCCTACAGGAAAACCGTCGTCCTTGATTTAA TTCTATGGACCGTCGGCTCAAAACGTTCCCGCTGTAATTGTATTTCCCCA CTAGCTACTGATCGTCGCCCACGATAAAGGGCAAGGCGGGGGGGGCGGGG GTTATCAGTCAGAAAAAATCGGAGTCTTACTCGTGAAAAAGGCATCGACT CAGGACATTCCATCTTCACCAGAGCGAATCTAGGCTGTTGTCGTAGCGAT CTGTACAGCCCAAAAACTGATTTAGAAAGATGGAGCGGTAGAGCCCTTTC GCTATGACGAGCGATGACCAATCGCTCTTGCAAACTTTGTAGATTTCTCA TGGTACGTGCGCATCGGGGAGAAGTTTTTCTGTCAACACATAAGAACACC GACTGATTGTTACCTAAATAGCCTTCGCGGCAACGTACTGATATTTCTGA GGATTTTGCTGTCGTTTCCGCTGCCAGGCTGAGAAGATCAGCCCCAACGA CCTGGCCGTGTTCGACGAAGAAGCAGTGCCGAATCAGTGGAGCCGTCGGG TGCACACCCTCGAGCGCATTGCCGATCGAGTGCCCGTGACCAACCGCTTT CCTGTGTACGCAGAGTACAGGAACGAAGACAAGCACCTCCACCTCTGTCA GGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig9016:3481..6884-

>mRNA_H-elongata_contig9016.16503.1 ID=mRNA_H-elongata_contig9016.16503.1|Name=mRNA_H-elongata_contig9016.16503.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1968bp|location=Sequence derived from alignment at H-elongata_contig9016:3481..6884- (Himanthalia elongata Himel1 dioecious)
ATGACGCAAGGTCGAAGGGCTCGATTACTTGGCCCAGCCGAACGGTCCGA
ACGGCGATACCTCCGCAACCATCAAGATGTTGACGACGAGGTCGTCAGTG
CCAGCGCACGTGCCGGTGACACGGGCGAAGATGACGCAAGGTCGAAGGGC
TCGATTACTTGGCCCAGCCGAACGGTCCGAACGGCGATACCTCCGCAACC
ATCAAGATGTTGACGACGAGGTCGTCAGTGCCAGCGCACGTGCCGGTGAC
ACGGGCGAAGGCGAAGGAAGAGGTGTAAATCAAGGAAGCTCCGGCGGTGG
CCAAGGGAAAGACGGAGGTGATGTCGTCGATATCGACCAGACAATCGACC
GCTACGACTACCTCATCGCGTTTCCTAACCCTCTAGATGGTGGCACGGGA
CGAAGACGGGCGAAGGAAGAGGTGTAAATCAAGGAAGCTCCGGCGGTGGC
CAAGGGAAAGACGGAGGTGATGTCGTCGATATCGACCAGACAATCGACCG
CTACGACTACCTCATCGCGTTTCCTAACCCTCTAGATGGTGGCACGGGAC
GAAGACGGTTAGAAGGGGGTGAGGAAAGCGACGACCGCGACAGCGACGCC
ACCGAGGAAGATGTCAGGCGTATCACGCTAGCCGAGTTAGAAGGGGGTGA
GGAAAGCGACGACCGCGACAGCGACGCCACCGAGGAAGATGTCAGGCGTA
TCACGCTAGCCGAGGTGACCGACATCTGGTACTCTGCCGTGCCGGGAGAT
GAGGTCGCTAAAACCGCCGCCAAGGAAAGCATCACGCGGGAATGGGAGGC
GAGATTTCGGACCCCCAGCAACAACTCAGAGGAGGTGACCGACATCTGGT
ACTCTGCCGTGCCGGGAGATGAGGTCGCTAAAACCGCCGCCAAGGAAAGC
ATCACGCGGGAATGGGAGGCGAGATTTCGGACCCCCAGCAACAACTCAGA
GGAGGTTTCGATATCTCGATCGGAGTGGTCCAGGCTAGCGCGCGACGTGA
TCGTTAACACGCTGTTCGCTAAGTCGGGGCTTCAGCTGAAGCTGACGCTG
TCGCGGCAAAGAGACCGGGTTTCGATATCTCGATCGGAGTGGTCCAGGCT
AGCGCGCGACGTGATCGTTAACACGCTGTTCGCTAAGTCGGGGCTTCAGC
TGAAGCTGACGCTGTCGCGGCAAAGAGACCGGGTACTCTGTCAGATCCGT
GCTCCTATCACGCTGCTGGAGAGAGAAGCGGCGCGGGAGAAGTACCGGCT
TCAGTTTCGCGGGGAGGTACTCTGTCAGATCCGTGCTCCTATCACGCTGC
TGGAGAGAGAAGCGGCGCGGGAGAAGTACCGGCTTCAGTTTCGCGGGGAG
GTTGATCCCGGGGAAGATTTCTGGACGGAAGAGGAGATCGCGGAAGAACA
AAGATTATACGGAAAGGACGAGGCAAACGAAACGCTTGAGAAGCTTTTCC
AGGCAGGTTGATCCCGGGGAAGATTTCTGGACGGAAGAGGAGATCGCGGA
AGAACAAAGATTATACGGAAAGGACGAGGCAAACGAAACGCTTGAGAAGC
TTTTCCAGGCAGGATTTTGCTGTCGTTTCCGCTGCCAGGCTGAGAAGATC
AGCCCCAACGACCTGGCCGTGTTCGACGAAGAAGCAGTGCCGAATCAGTG
GAGCCGTCGGGTGCACACCCTCGAGCGCATTGCCGATCGAGTGCCCGTGA
CCAACCGCTTTCCTGTGTACGCAGAGTACAGGAACGAAGACAAGCACCTC
CACCTCTGTCAGGCGGATTTTGCTGTCGTTTCCGCTGCCAGGCTGAGAAG
ATCAGCCCCAACGACCTGGCCGTGTTCGACGAAGAAGCAGTGCCGAATCA
GTGGAGCCGTCGGGTGCACACCCTCGAGCGCATTGCCGATCGAGTGCCCG
TGACCAACCGCTTTCCTGTGTACGCAGAGTACAGGAACGAAGACAAGCAC
CTCCACCTCTGTCAGGCG
back to top