mRNA_H-elongata_contig90072.16496.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90072.16496.1
Unique NamemRNA_H-elongata_contig90072.16496.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 2.220e-63
Identity = 99/163 (60.74%), Postives = 126/163 (77.30%), Query Frame = 1
Query:    1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEE-LPEGKSSIASFGPCRFD-IGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYGST 483
            ++K+  S ++R+VFLVGLEGTGHHYMADVLE+VCK  ++ CPK+C + KV+YP+LS PK+   Y  AR+RLREEM+ LA   EE L EG+S++ SFG CRF   GM+SYPNFNG EK LQYVD ++V EEAERAG+D+R +YL R A  IL SD+ HHNYG +
Sbjct:   99 VEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNYGGS 261          
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.080e-54
Identity = 84/162 (51.85%), Postives = 118/162 (72.84%), Query Frame = 1
Query:    1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLAL-KAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYGST 483
            ++K+T S +LR++FLVGLEGTGHHY  +V ++ C  A +PC   C + K +YP L+ P T  +Y+ AR  LR E++NLA   AE + EG+++IA F  CR   GM+S+PNFNG +K LQYVD +++ EEAERAG+D+R +YL R A+SIL+SDT H++YG T
Sbjct:   58 VEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGT 219          
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.990e-50
Identity = 82/138 (59.42%), Postives = 105/138 (76.09%), Query Frame = 1
Query:   76 MADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEE-LPEGKSSIASFGPCRFD-IGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYGST 483
            MADVLE+VCK  ++ CPK+C + KV+YP+LS P++   Y  AR+RLREEM+ LA   EE L EG+S++ SFG CRF   GM+SYPNFNG EK LQYVD ++V EEAERAG+D+R +YL R A  IL SD++HHNYG +
Sbjct:    1 MADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNYGGS 138          
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.200e-17
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 1
Query:    1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNY 474
            + K   S   R+VF+ GLEGTGHHY+     ++  +  +  P+    GK IY   +  K   N K         ++N+      L E  ++++S G   F     SYP  +GP K +QY+DL ++ E AE AGID R++YL R AK ++I++T+H  +
Sbjct:  139 LPKTHVSDVFRLVFVAGLEGTGHHYVMWANASLFGD-NMNLPRRYGHGKEIYEYYAPLKMGQNVKQFTMSSHNAVENMR----RLAEWAANLSSPGALEFFSIPCSYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSAKEVVIANTVHRKF 291          
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.980e-14
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  214 REEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNY 474
            R++M++LA +A+ LP         G  +   G +SYP  NGP+K  QYVDL+++ E AE  G+DLR++Y+ R AK +L++DT+H  +
Sbjct:   42 RDQMRDLAQRAQTLPTP-------GTVQLITGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGF 121          
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A7S0A0K6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0K6_9DINO)

HSP 1 Score: 77.4 bits (189), Expect = 1.030e-13
Identity = 52/181 (28.73%), Postives = 87/181 (48.07%), Query Frame = 1
Query:    1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSK------------PKTAYNYKHAR---------ERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYGS 480
            + K+    + R++F+ GLEG+GHH    +L+   K  +  C     LG+ ++ D ++            P+ A  +++A           R   E++    +          +AS G C    GM+SYPNF G  K  Q  D++++ E AE  G+D RI+ L R A ++L S T+H ++GS
Sbjct:   99 LPKRVHGARWRLLFVAGLEGSGHHLWIPLLKRCVKARR--CAADVELGRRLWTDRTRKGLWSFETKLYAPRAAKKWEYAPPGAKWLSGFRRAEGEVRTALRRLSRRNATSPLLASLGGC----GMMSYPNFPGKLKMFQTPDVRLLAELAEDEGVDFRILVLHRPAAAVLRSTTIHRHFGS 273          
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A813BJ34_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BJ34_SYMMI)

HSP 1 Score: 76.6 bits (187), Expect = 1.400e-13
Identity = 47/154 (30.52%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLE--NVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISD 456
            + K+  S  +R VF  GLEGTGHH+  ++L   ++  +A +           ++    +       +H  E + E  +NL+     +P       + G   +  GM+SYPNF GP++ +Q  D+  + + AE AGIDLRI+ LTR   S++ S+
Sbjct:   64 VTKKVVSSNVRFVFFAGLEGTGHHFWQELLRRLSISHSADLSQELFNRQHGSLFSSTDERGREDLAEHVVELMSETQKNLS----SVPGCNVVALNVGGTTYPSGMMSYPNFGGPDRLIQNPDMFTLAKLAEAAGIDLRIVLLTRHPASLVRSE 213          
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A1Q9EVB9_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EVB9_SYMMI)

HSP 1 Score: 76.6 bits (187), Expect = 2.670e-13
Identity = 47/154 (30.52%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLE--NVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISD 456
            + K+  S  +R VF  GLEGTGHH+  ++L   ++  +A +           ++    +       +H  E + E  +NL+     +P       + G   +  GM+SYPNF GP++ +Q  D+  + + AE AGIDLRI+ LTR   S++ S+
Sbjct:  302 VTKKVVSSNVRFVFFAGLEGTGHHFWQELLRRLSISHSADLSQELFNRQHGSLFSSTDERGREDLAEHVVELMSETQKNLS----SVPGCNVVALNVGGTTYPSGMMSYPNFGGPDRLIQNPDMFTLAKLAEAAGIDLRIVLLTRHPASLVRSE 451          
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A7S3PR25_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR25_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.530e-13
Identity = 56/173 (32.37%), Postives = 82/173 (47.40%), Query Frame = 1
Query:    1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYN-------------YKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGML-SYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYG 477
            +KK  FS KLR+VF VGLEGTGHH    ++  + KN Q+     C L  +I          +N             +K   E   + M  + LKA            +   + + G + SYP F G EK LQ+ D+  + E AE  GID R++ L R+A+ ++ISD  H ++ 
Sbjct:  412 LKKTVFS-KLRLVFFVGLEGTGHHLWQGIVMKLLKNKQLNAE--CKLNDLIMHPAGGCWAPWNNGKGFFCSAASESFKTGYEMAADAM--MKLKASNATGTHMLNLVYRGWKGNCGSIASYPCFGGSEKNLQHPDVLKLAELAESIGIDFRVVLLQRKAEELVISDIWHRHFN 579          
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A812H6X7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812H6X7_9DINO)

HSP 1 Score: 73.9 bits (180), Expect = 1.230e-12
Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 1
Query:    1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMC---TLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISD 456
            + K+  S K+R VF  GLEGTGHH+  ++L  +  +      +       G  ++    +     + +H  E + E  +NL+      P       + G      GM+SYPNF G ++  Q  D+  + + AE AGIDLRI+ LTRQ  S++ S+
Sbjct:   59 VTKKVVSSKIRFVFFAGLEGTGHHFWQEMLRRLSISHSADLSQELFNRRHGPGLFSSSDEQVREASAEHVVELMSEMQKNLS----SAPGCNVVALNVGGITRPSGMMSYPNFGGRDRMFQNPDMFTLAKLAEAAGIDLRIVLLTRQPASLVQSE 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FMV4_ECTSI2.220e-6360.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMV3_ECTSI1.080e-5451.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KIA1_9PHAE3.990e-5059.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH94_9PHAE1.200e-1734.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1E6_ECTSI1.980e-1441.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0A0K6_9DINO1.030e-1328.73Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A813BJ34_SYMMI1.400e-1330.52Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A1Q9EVB9_SYMMI2.670e-1330.52Uncharacterized protein n=2 Tax=Symbiodinium micro... [more]
A0A7S3PR25_9STRA9.530e-1332.37Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A812H6X7_9DINO1.230e-1230.97Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90072contigH-elongata_contig90072:451..936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue4e-12
Seed eggNOG ortholog44056.XP_009035729.1
KEGG koko:K10147,ko:K17506
KEGG Pathwayko04115,map04115
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931300.823334-CDS-H-elongata_contig90072:450..9361622931300.823334-CDS-H-elongata_contig90072:450..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90072 451..936 -
1691679779.8120122-CDS-H-elongata_contig90072:450..9361691679779.8120122-CDS-H-elongata_contig90072:450..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90072 451..936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90072.16496.1prot_H-elongata_contig90072.16496.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90072 451..936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90072.16496.1

>prot_H-elongata_contig90072.16496.1 ID=prot_H-elongata_contig90072.16496.1|Name=mRNA_H-elongata_contig90072.16496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKV
IYPDLSKPKTAYNYKHARERLREEMQNLALKAEELPEGKSSIASFGPCRF
DIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILI
SDTMHHNYGST*
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mRNA from alignment at H-elongata_contig90072:451..936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90072.16496.1 ID=mRNA_H-elongata_contig90072.16496.1|Name=mRNA_H-elongata_contig90072.16496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig90072:451..936- (Himanthalia elongata Himel1 dioecious)
ATCAAGAAGCAAACGTTCAGCCCTAAGTTGCGCATCGTTTTTCTCGTGGG TCTGGAGGGTACGGGACACCACTACATGGCGGACGTACTGGAAAATGTGT GCAAAAATGCTCAGATCCCTTGCCCCAAGATGTGCACCCTTGGGAAAGTG ATATATCCAGACCTCTCAAAACCCAAGACTGCGTACAACTACAAGCACGC TCGCGAAAGGCTTCGCGAGGAGATGCAGAACCTGGCCTTAAAAGCGGAAG AACTGCCCGAGGGAAAATCCTCTATAGCTAGCTTCGGACCTTGTCGTTTT GATATCGGTATGCTGTCTTATCCCAACTTCAATGGCCCGGAGAAGACGCT GCAGTACGTGGACTTGAAGATAGTTGTTGAGGAAGCGGAGAGGGCGGGGA TCGACCTGAGAATCATCTACCTGACCCGGCAAGCAAAATCGATTTTGATA TCCGACACCATGCACCACAATTATGGGAGCACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig90072:451..936-

>mRNA_H-elongata_contig90072.16496.1 ID=mRNA_H-elongata_contig90072.16496.1|Name=mRNA_H-elongata_contig90072.16496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig90072:451..936- (Himanthalia elongata Himel1 dioecious)
ATCAAGAAGCAAACGTTCAGCCCTAAGTTGCGCATCGTTTTTCTCGTGGG
TCTGGAGGGTACGGGACACCACTACATGGCGGACGTACTGGAAAATGTGT
GCAAAAATGCTCAGATCCCTTGCCCCAAGATGTGCACCCTTGGGAAAGTG
ATATATCCAGACCTCTCAAAACCCAAGACTGCGTACAACTACAAGCACGC
TCGCGAAAGGCTTCGCGAGGAGATGCAGAACCTGGCCTTAAAAGCGGAAG
AACTGCCCGAGGGAAAATCCTCTATAGCTAGCTTCGGACCTTGTCGTTTT
GATATCGGTATGCTGTCTTATCCCAACTTCAATGGCCCGGAGAAGACGCT
GCAGTACGTGGACTTGAAGATAGTTGTTGAGGAAGCGGAGAGGGCGGGGA
TCGACCTGAGAATCATCTACCTGACCCGGCAAGCAAAATCGATTTTGATA
TCCGACACCATGCACCACAATTATGGGAGCACGTGAATCAAGAAGCAAAC
GTTCAGCCCTAAGTTGCGCATCGTTTTTCTCGTGGGTCTGGAGGGTACGG
GACACCACTACATGGCGGACGTACTGGAAAATGTGTGCAAAAATGCTCAG
ATCCCTTGCCCCAAGATGTGCACCCTTGGGAAAGTGATATATCCAGACCT
CTCAAAACCCAAGACTGCGTACAACTACAAGCACGCTCGCGAAAGGCTTC
GCGAGGAGATGCAGAACCTGGCCTTAAAAGCGGAAGAACTGCCCGAGGGA
AAATCCTCTATAGCTAGCTTCGGACCTTGTCGTTTTGATATCGGTATGCT
GTCTTATCCCAACTTCAATGGCCCGGAGAAGACGCTGCAGTACGTGGACT
TGAAGATAGTTGTTGAGGAAGCGGAGAGGGCGGGGATCGACCTGAGAATC
ATCTACCTGACCCGGCAAGCAAAATCGATTTTGATATCCGACACCATGCA
CCACAATTATGGGAGCACGTGA
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