mRNA_H-elongata_contig90030.16493.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90030.16493.1
Unique NamemRNA_H-elongata_contig90030.16493.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig90030.16493.1 vs. uniprot
Match: D7FM23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM23_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.100e-30
Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 1 
Query:    1 MSSTMLPSAEWISAAARQAARSGVARSNLQAGQNSSSPDSNN-RGLSTTPATSGSAGDRRDHEHVAGHRGSGGLVKGKAVFCLPPNVEWFQGHFAYAAGGGCTASLGLLGTELPVDP 348
            MSST+LPSAEWISA++R+                   P + +  G+   P ++    D    E   GHRGSGGLV G+AVFCLPP VEWFQGHFAYAA GGCTASLG+LGTELPVDP
Sbjct:    1 MSSTLLPSAEWISASSRRXXXXXXXXXXXXXXXXXXPPGAGHPTGIPPQPGSNDD--DAHREERFVGHRGSGGLVHGRAVFCLPPGVEWFQGHFAYAARGGCTASLGVLGTELPVDP 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90030.16493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM23_ECTSI5.100e-3055.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90030contigH-elongata_contig90030:1894..2301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010370.1
Exons2
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931300.5613844-CDS-H-elongata_contig90030:1893..20521622931300.5613844-CDS-H-elongata_contig90030:1893..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90030 1894..2052 +
1691679779.733713-CDS-H-elongata_contig90030:1893..20521691679779.733713-CDS-H-elongata_contig90030:1893..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90030 1894..2052 +
1622931300.5748417-CDS-H-elongata_contig90030:2097..23011622931300.5748417-CDS-H-elongata_contig90030:2097..2301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90030 2098..2301 +
1691679779.746199-CDS-H-elongata_contig90030:2097..23011691679779.746199-CDS-H-elongata_contig90030:2097..2301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90030 2098..2301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90030.16493.1prot_H-elongata_contig90030.16493.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90030 1894..2301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90030.16493.1

>prot_H-elongata_contig90030.16493.1 ID=prot_H-elongata_contig90030.16493.1|Name=mRNA_H-elongata_contig90030.16493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MSSTMLPSAEWISAAARQAARSGVARSNLQAGQNSSSPDSNNRGLSTTPA
TSGSAGDRRDHEHVAGHRGSGGLVKGKAVFCLPPNVEWFQGHFAYAAGGG
CTASLGLLGTELPVDPVSMN*
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mRNA from alignment at H-elongata_contig90030:1894..2301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90030.16493.1 ID=mRNA_H-elongata_contig90030.16493.1|Name=mRNA_H-elongata_contig90030.16493.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig90030:1894..2301+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTCCACGATGTTACCCTCAGCCGAATGGATATCAGCAGCTGCGCG
ACAAGCTGCAAGGTCTGGCGTAGCCCGTTCCAACCTGCAGGCGGGACAAA
ACTCATCGTCTCCAGATTCAAATAATCGAGGTCTGTCGACGACACCCGCA
ACGTCTGGGGTGGCGATTCAGGCGAACACTGCAGCGACCGCTGACGGCAC
AGAGTCAGCTGGCGACAGACGTGACCACGAGCACGTGGCGGGTCATCGCG
GTTCAGGAGGGCTCGTAAAAGGCAAAGCTGTGTTTTGCTTGCCTCCAAAT
GTGGAGTGGTTCCAGGGCCACTTCGCGTACGCTGCGGGAGGAGGTTGCAC
GGCTTCCCTTGGATTACTAGGAACCGAGCTGCCGGTCGATCCTGTGAGTA
TGAATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig90030:1894..2301+

>mRNA_H-elongata_contig90030.16493.1 ID=mRNA_H-elongata_contig90030.16493.1|Name=mRNA_H-elongata_contig90030.16493.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig90030:1894..2301+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTCCACGATGTTACCCTCAGCCGAATGGATATCAGCAGCTGCGCG
ACAAGCTGCAAGGTCTGGCGTAGCCCGTTCCAACCTGCAGGCGGGACAAA
ACTCATCGTCTCCAGATTCAAATAATCGAGGTCTGTCGACGACACCCGCA
ACGTCTGGGATGTCTTCCACGATGTTACCCTCAGCCGAATGGATATCAGC
AGCTGCGCGACAAGCTGCAAGGTCTGGCGTAGCCCGTTCCAACCTGCAGG
CGGGACAAAACTCATCGTCTCCAGATTCAAATAATCGAGGTCTGTCGACG
ACACCCGCAACGTCTGGGTCAGCTGGCGACAGACGTGACCACGAGCACGT
GGCGGGTCATCGCGGTTCAGGAGGGCTCGTAAAAGGCAAAGCTGTGTTTT
GCTTGCCTCCAAATGTGGAGTGGTTCCAGGGCCACTTCGCGTACGCTGCG
GGAGGAGGTTGCACGGCTTCCCTTGGATTACTAGGAACCGAGCTGCCGGT
CGATCCTGTGAGTATGAATTGATCAGCTGGCGACAGACGTGACCACGAGC
ACGTGGCGGGTCATCGCGGTTCAGGAGGGCTCGTAAAAGGCAAAGCTGTG
TTTTGCTTGCCTCCAAATGTGGAGTGGTTCCAGGGCCACTTCGCGTACGC
TGCGGGAGGAGGTTGCACGGCTTCCCTTGGATTACTAGGAACCGAGCTGC
CGGTCGATCCTGTGAGTATGAATTGA
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