mRNA_H-elongata_contig90019.16491.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90019.16491.1
Unique NamemRNA_H-elongata_contig90019.16491.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig90019.16491.1 vs. uniprot
Match: A0A6A4YXI7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.400e-9
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 YVLALVDDVSSFVFLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKL 189
            YVL L DD++ FV L    S TS+VA  +I++W ++ G PEV++SDG  HFKN  +K +A +L
Sbjct: 1050 YVLVLKDDLTHFVRLIACDSPTSQVAVDAIMDWSAMFGVPEVWISDGGSHFKNNIMKALAHRL 1112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90019.16491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A4YXI7_9STRA1.400e-947.62Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90019contigH-elongata_contig90019:2333..2584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog164328.Phyra78350
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH2U@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931300.467169-CDS-H-elongata_contig90019:2332..25841622931300.467169-CDS-H-elongata_contig90019:2332..2584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90019 2333..2584 -
1691679779.704641-CDS-H-elongata_contig90019:2332..25841691679779.704641-CDS-H-elongata_contig90019:2332..2584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90019 2333..2584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90019.16491.1prot_H-elongata_contig90019.16491.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90019 2333..2584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90019.16491.1

>prot_H-elongata_contig90019.16491.1 ID=prot_H-elongata_contig90019.16491.1|Name=mRNA_H-elongata_contig90019.16491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
YVLALVDDVSSFVFLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPH
FKNETLKLVAAKLGASYRFRWHTHRGAMILWRE*
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mRNA from alignment at H-elongata_contig90019:2333..2584-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90019.16491.1 ID=mRNA_H-elongata_contig90019.16491.1|Name=mRNA_H-elongata_contig90019.16491.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig90019:2333..2584- (Himanthalia elongata Himel1 dioecious)
TACGTGCTCGCACTTGTTGATGACGTGAGCTCGTTCGTGTTTTTGCAACC
GGCGGCGTCTTGCACAAGTGAAGTTGCTGCAAGAAGTATTCTCGAGTGGG
TGTCAGTATTGGGCACTCCCGAGGTGTTCGTGAGCGATGGAGCACCGCAC
TTCAAAAATGAGACGCTGAAGTTGGTTGCTGCGAAACTGGGAGCCTCGTA
TCGGTTTAGGTGGCATACTCATCGTGGAGCAATGATACTGTGGAGAGAAT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig90019:2333..2584-

>mRNA_H-elongata_contig90019.16491.1 ID=mRNA_H-elongata_contig90019.16491.1|Name=mRNA_H-elongata_contig90019.16491.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig90019:2333..2584- (Himanthalia elongata Himel1 dioecious)
TACGTGCTCGCACTTGTTGATGACGTGAGCTCGTTCGTGTTTTTGCAACC
GGCGGCGTCTTGCACAAGTGAAGTTGCTGCAAGAAGTATTCTCGAGTGGG
TGTCAGTATTGGGCACTCCCGAGGTGTTCGTGAGCGATGGAGCACCGCAC
TTCAAAAATGAGACGCTGAAGTTGGTTGCTGCGAAACTGGGAGCCTCGTA
TCGGTTTAGGTGGCATACTCATCGTGGAGCAATGATACTGTGGAGAGAAT
GATACGTGCTCGCACTTGTTGATGACGTGAGCTCGTTCGTGTTTTTGCAA
CCGGCGGCGTCTTGCACAAGTGAAGTTGCTGCAAGAAGTATTCTCGAGTG
GGTGTCAGTATTGGGCACTCCCGAGGTGTTCGTGAGCGATGGAGCACCGC
ACTTCAAAAATGAGACGCTGAAGTTGGTTGCTGCGAAACTGGGAGCCTCG
TATCGGTTTAGGTGGCATACTCATCGTGGAGCAATGATACTGTGGAGAGA
ATGA
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