mRNA_H-elongata_contig90013.16490.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE) HSP 1 Score: 125 bits (314), Expect = 1.050e-33 Identity = 64/121 (52.89%), Postives = 80/121 (66.12%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRK-RPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFGIT 360
IE LLYGC TWTL+ +H AKLR+ HH VLLR+IG QR+ R DH SY +AL +TRC SIETT+R RRL +AG ++R GRLP R+ FG + G GG+ K W + D+R F T
Sbjct: 7 IETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKAT 127
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.420e-33 Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
+EALLY C+TW+ H LR++HHR+LLR+IG +RK+ +R SY + L+ C S+E T+R RRLL+AG+L R GRLPKR+ FG L G +R RGG+E+ W CV D++ FG
Sbjct: 1 MEALLYSCTTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 125 bits (315), Expect = 4.330e-33 Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
+EALLYGC TW+ H LR++HHR+LLR+IG +RK+ +R SY + L C S+E T+R RRLL+AG L R GRLPKR+ FG L G +R RGG+E+ W CV D++ FG
Sbjct: 133 MEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE) HSP 1 Score: 125 bits (314), Expect = 5.640e-31 Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
+EALLYGC TW+ H LR++HHR+L R+IG + K+ +R SY R LE C S+E T+R RRLL+AG L R GRLPKR+ FG L G +R RGG+E+ W CV D++ FG
Sbjct: 396 MEALLYGCMTWSPLSGHYQTLRSIHHRLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 125 bits (315), Expect = 7.450e-31 Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
+EALLYGC TW+ H LR++HHR+LLR+IG +RK+ +R SY + L+ C S+E T+R RRLL+AG L R GRLPKR+ FG L G +R RGG+E+ W CV D+ FG
Sbjct: 485 MEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.240e-30 Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
+EALLYGC TW+ H LR++HHR+LLR+IG +RK+ +R SY + L+ C S+E T+R RRLL+AG L R GRLPKR+ G L G +R RGG+E+ W CV D++ FG
Sbjct: 157 MEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.670e-30 Identity = 57/117 (48.72%), Postives = 78/117 (66.67%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTF 351
+EALLYGC TW+ + H L+T HHR+LLR+IG +RKR +R SY +AL+ C S+E T+R RRLL+AG + R GRLPKR+ FG L G G+G E+ W C++ D++ F
Sbjct: 112 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE) HSP 1 Score: 119 bits (299), Expect = 3.700e-30 Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG---ITGDW 369
+EALLYGC TW+ + H L+T HHR+LLR+IG +RKR +R SY +AL+ C S+E T+R RRLL+AG + R GRLPKR+ FG L G G+G E+ W C++ D++ F + G W
Sbjct: 163 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.390e-29 Identity = 57/117 (48.72%), Postives = 78/117 (66.67%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTF 351
+EALLYGC TW+ + H L+T HHR+LLR+IG +RKR +R SY +AL+ C S+E T+R RRLL+AG + R GRLPKR+ FG L G G+G E+ W C++ D++ F
Sbjct: 131 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 247
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE) HSP 1 Score: 117 bits (293), Expect = 3.630e-29 Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
+EALLYGC TW+ H LR++HHR+LLR+IG +RK+ +R SY +A + C S+E T+R RRLL A L R GRLPKR+ G L G +R RGG+++ W CV D++ FG
Sbjct: 113 MEALLYGCMTWSPLNGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig90013.16490.1 >prot_H-elongata_contig90013.16490.1 ID=prot_H-elongata_contig90013.16490.1|Name=mRNA_H-elongata_contig90013.16490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRAback to top mRNA from alignment at H-elongata_contig90013:2213..2629+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig90013.16490.1 ID=mRNA_H-elongata_contig90013.16490.1|Name=mRNA_H-elongata_contig90013.16490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig90013:2213..2629+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig90013:2213..2629+ >mRNA_H-elongata_contig90013.16490.1 ID=mRNA_H-elongata_contig90013.16490.1|Name=mRNA_H-elongata_contig90013.16490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig90013:2213..2629+ (Himanthalia elongata Himel1 dioecious)back to top |