mRNA_H-elongata_contig89986.16486.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89986.16486.1
Unique NamemRNA_H-elongata_contig89986.16486.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89986.16486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89986contigH-elongata_contig89986:1561..2007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89986.16486.1prot_H-elongata_contig89986.16486.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89986 1628..2005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931299.384408-UTR-H-elongata_contig89986:1560..16271622931299.384408-UTR-H-elongata_contig89986:1560..1627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89986 1561..1627 +
1691679779.1712503-UTR-H-elongata_contig89986:1560..16271691679779.1712503-UTR-H-elongata_contig89986:1560..1627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89986 1561..1627 +
1622931299.4190981-UTR-H-elongata_contig89986:2005..20071622931299.4190981-UTR-H-elongata_contig89986:2005..2007Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89986 2006..2007 +
1691679779.1888297-UTR-H-elongata_contig89986:2005..20071691679779.1888297-UTR-H-elongata_contig89986:2005..2007Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89986 2006..2007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931299.4012616-CDS-H-elongata_contig89986:1627..20051622931299.4012616-CDS-H-elongata_contig89986:1627..2005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89986 1628..2005 +
1691679779.1797018-CDS-H-elongata_contig89986:1627..20051691679779.1797018-CDS-H-elongata_contig89986:1627..2005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89986 1628..2005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89986.16486.1

>prot_H-elongata_contig89986.16486.1 ID=prot_H-elongata_contig89986.16486.1|Name=mRNA_H-elongata_contig89986.16486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MRRESYANFLTILHQNCPAAGRVEAPSTALALRYTNHPDVEEDVNHIFCQ
SYVAANKAGARSDRSNAAKRKEGGRRALSTTKHVEKARSASGSLQGQLEL
DDTEEFENAGGRALAPPLSFSELSY*
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mRNA from alignment at H-elongata_contig89986:1561..2007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89986.16486.1 ID=mRNA_H-elongata_contig89986.16486.1|Name=mRNA_H-elongata_contig89986.16486.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig89986:1561..2007+ (Himanthalia elongata Himel1 dioecious)
CTGTACATTACACAACACACGCTGGTGCCGCGGGCCGCAGCCACCACCTG
TTTACACAGCATGTCATATGCGGCGGGAGAGTTACGCCAACTTCTTGACG
ATTCTACACCAGAACTGTCCTGCCGCGGGCCGTGTCGAGGCACCCTCCAC
CGCATTAGCGTTGAGATACACAAATCATCCTGATGTCGAGGAGGACGTGA
ACCACATCTTCTGCCAATCATACGTTGCCGCGAACAAGGCGGGCGCTAGA
AGTGACCGCTCGAATGCGGCCAAGCGCAAAGAGGGAGGAAGGAGGGCGCT
TTCTACAACAAAGCATGTCGAAAAAGCGAGATCCGCAAGCGGCTCACTTC
AGGGGCAGCTAGAGCTGGACGATACCGAAGAATTTGAGAATGCGGGGGGT
AGAGCGTTGGCGCCGCCGTTGTCATTCTCGGAGCTGTCGTATTAATA
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Coding sequence (CDS) from alignment at H-elongata_contig89986:1561..2007+

>mRNA_H-elongata_contig89986.16486.1 ID=mRNA_H-elongata_contig89986.16486.1|Name=mRNA_H-elongata_contig89986.16486.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig89986:1561..2007+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCGGGAGAGTTACGCCAACTTCTTGACGATTCTACACCAGAACTG
TCCTGCCGCGGGCCGTGTCGAGGCACCCTCCACCGCATTAGCGTTGAGAT
ACACAAATCATCCTGATGTCGAGGAGGACGTGAACCACATCTTCTGCCAA
TCATACGTTGCCGCGAACAAGGCGGGCGCTAGAAGTGACCGCTCGAATGC
GGCCAAGCGCAAAGAGGGAGGAAGGAGGGCGCTTTCTACAACAAAGCATG
TCGAAAAAGCGAGATCCGCAAGCGGCTCACTTCAGGGGCAGCTAGAGCTG
GACGATACCGAAGAATTTGAGAATGCGGGGGGTAGAGCGTTGGCGCCGCC
GTTGTCATTCTCGGAGCTGTCGTATTAAATGCGGCGGGAGAGTTACGCCA
ACTTCTTGACGATTCTACACCAGAACTGTCCTGCCGCGGGCCGTGTCGAG
GCACCCTCCACCGCATTAGCGTTGAGATACACAAATCATCCTGATGTCGA
GGAGGACGTGAACCACATCTTCTGCCAATCATACGTTGCCGCGAACAAGG
CGGGCGCTAGAAGTGACCGCTCGAATGCGGCCAAGCGCAAAGAGGGAGGA
AGGAGGGCGCTTTCTACAACAAAGCATGTCGAAAAAGCGAGATCCGCAAG
CGGCTCACTTCAGGGGCAGCTAGAGCTGGACGATACCGAAGAATTTGAGA
ATGCGGGGGGTAGAGCGTTGGCGCCGCCGTTGTCATTCTCGGAGCTGTCG
TATTAA
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