mRNA_H-elongata_contig89892.16481.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89892.16481.1
Unique NamemRNA_H-elongata_contig89892.16481.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89892.16481.1 vs. uniprot
Match: A0A6H5JIA4_9PHAE (PHD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA4_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 8.840e-68
Identity = 131/215 (60.93%), Postives = 157/215 (73.02%), Query Frame = 1 
Query:    1 QEFIAICAHLPAELKRDLKEVASLNKSTHTLTAQLSREQTEILEKAKGKFRVMTHPEQLASLVDEEALGRTRQKRRKVDECVSEKVGITKRMYDTLDGCIKNIADEVIDRLEKDVKENYGAIPDLSLLAPDATAENELEAAXXXXXXXXXXXXXSQAGAGAAMNXXXXXXXXXVNGSGLRGLVTGADGAARRDDTIAANEPVYCICRQVGWGDMV 645
            QEF+AICAHLP ELK DLK+VA+L++ TH LTA+LSR+Q EILE+AK K+R MT PEQL +L+DE+AL ++RQKRRKVDE VSEKV ITKRMY  LD CIKNI DE ID+LEKDVKE+YGA+PD+  LAP+  AE++  A   XXXXXXXXXX   AG                 G G   L   A GA R +D ++ NEPVYC+CRQVGWGDM+
Sbjct:   39 QEFLAICAHLPTELKDDLKKVATLSEETHRLTAELSRDQAEILERAKAKYRQMTRPEQLKNLIDEDALQKSRQKRRKVDESVSEKVSITKRMYGALDTCIKNIDDE-IDKLEKDVKESYGAMPDIPSLAPEMFAEHKKTA---XXXXXXXXXXGGLAGPQTRAGVAAYPAAALAGGVGAGALXXXAGGAVRSNDLLSTNEPVYCVCRQVGWGDMI 249
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BLAST of mRNA_H-elongata_contig89892.16481.1 vs. uniprot
Match: D7FVE0_ECTSI (PHD finger protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE0_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 7.230e-64
Identity = 126/215 (58.60%), Postives = 153/215 (71.16%), Query Frame = 1 
Query:    1 QEFIAICAHLPAELKRDLKEVASLNKSTHTLTAQLSREQTEILEKAKGKFRVMTHPEQLASLVDEEALGRTRQKRRKVDECVSEKVGITKRMYDTLDGCIKNIADEVIDRLEKDVKENYGAIPDLSLLAPDATAENELEAAXXXXXXXXXXXXXSQAGAGAAMNXXXXXXXXXVNGSGLRGLVTGADGAARRDDTIAANEPVYCICRQVGWGDMV 645
            QEF+AICAHLP ELK DLK+VA+L++ TH LTA+LSR+Q EILE+AK K+R MT PEQL +L+DE+AL ++R+KRRKVDE VSEKV ITKRMY  LD CIKNI DE ID+LEKDVKE+YGA+PD+  LAP+  AE++  A   XXXXXXXXXX   AG                 G G            R +D ++ NEPVYC+CRQVGWGDM+
Sbjct:   30 QEFLAICAHLPTELKDDLKKVATLSEETHRLTAELSRDQAEILERAKAKYRQMTRPEQLKNLIDEDALQKSREKRRKVDESVSEKVSITKRMYGALDTCIKNIDDE-IDKLEKDVKESYGAMPDIPSLAPEMFAEHKKTA---XXXXXXXXXXGGLAGPQTRAGVAAYPAAALAGGVGAXXXXXXXXXXVRGNDLLSTNEPVYCVCRQVGWGDMI 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89892.16481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIA4_9PHAE8.840e-6860.93PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FVE0_ECTSI7.230e-6458.60PHD finger protein-related n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89892contigH-elongata_contig89892:695..2478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.8
Seed ortholog evalue8.2e-53
Seed eggNOG ortholog2880.D7FVE0
KEGG rclassRC00002,RC00021,RC00043,RC03180
KEGG koko:K00927,ko:K07561,ko:K11319,ko:K11346,ko:K11379,ko:K19197,ko:K19198
KEGG ReactionR01512,R10455
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
EggNOG free text desc.methylated histone binding
EggNOG OGsCOG5034@1,KOG1973@2759
EC2.5.1.108,2.7.2.3
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPHD-type zinc finger and ING domain protein
Ec32 orthologEc-14_000760.1
Exons4
Model size657
Cds size657
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89892.16481.1prot_H-elongata_contig89892.16481.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89892 695..2478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931298.7892182-CDS-H-elongata_contig89892:694..8501622931298.7892182-CDS-H-elongata_contig89892:694..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89892 695..850 +
1691679778.9312978-CDS-H-elongata_contig89892:694..8501691679778.9312978-CDS-H-elongata_contig89892:694..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89892 695..850 +
1622931298.8151224-CDS-H-elongata_contig89892:1149..13031622931298.8151224-CDS-H-elongata_contig89892:1149..1303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89892 1150..1303 +
1691679778.9428918-CDS-H-elongata_contig89892:1149..13031691679778.9428918-CDS-H-elongata_contig89892:1149..1303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89892 1150..1303 +
1622931298.8411994-CDS-H-elongata_contig89892:1687..17821622931298.8411994-CDS-H-elongata_contig89892:1687..1782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89892 1688..1782 +
1691679778.952632-CDS-H-elongata_contig89892:1687..17821691679778.952632-CDS-H-elongata_contig89892:1687..1782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89892 1688..1782 +
1622931298.8663683-CDS-H-elongata_contig89892:2226..24781622931298.8663683-CDS-H-elongata_contig89892:2226..2478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89892 2227..2478 +
1691679778.9626725-CDS-H-elongata_contig89892:2226..24781691679778.9626725-CDS-H-elongata_contig89892:2226..2478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89892 2227..2478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89892.16481.1

>prot_H-elongata_contig89892.16481.1 ID=prot_H-elongata_contig89892.16481.1|Name=mRNA_H-elongata_contig89892.16481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
QEFIAICAHLPAELKRDLKEVASLNKSTHTLTAQLSREQTEILEKAKGKF
RVMTHPEQLASLVDEEALGRTRQKRRKVDECVSEKVGITKRMYDTLDGCI
KNIADEVIDRLEKDVKENYGAIPDLSLLAPDATAENELEAAAAAAVVAAG
GGGGSQAGAGAAMNAVAGAGGGGVNGSGLRGLVTGADGAARRDDTIAANE
PVYCICRQVGWGDMVRER*
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mRNA from alignment at H-elongata_contig89892:695..2478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89892.16481.1 ID=mRNA_H-elongata_contig89892.16481.1|Name=mRNA_H-elongata_contig89892.16481.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1784bp|location=Sequence derived from alignment at H-elongata_contig89892:695..2478+ (Himanthalia elongata Himel1 dioecious)
CAGGAGTTCATCGCCATCTGCGCCCATCTTCCGGCAGAGCTCAAGAGAGA
CCTCAAAGAGGTAGCCAGCCTCAACAAATCCACGCACACCCTTACCGCCC
AGCTGAGCAGAGAACAGACGGAGATACTGGAGAAAGCCAAAGGAAAGTTC
AGAGTGGTGAGTATCCGCCGCGACGTCGCTTCCCCAGACCGGTGCCCGTA
ACCATCGACCGGGTTTCCAGCAGTAGCCCGACGCTTCTCGGCTGCGGGGA
TCGAGAGTATGCTTTGAGATAGGAAAGCTCAGAGTCAGAGTTAAGAACTT
AGTCGCGAATACCCGATTCTGTGTTTCGGGCAGTGTAACGACTTTTCACT
TCTCACGGAAGCTCTGCCTCTTTTGAGTGGTTTGTGGCGTGACGCGCTGG
ATGACACATGACTCACCCCGCCTTCCTCGTCTCTCTTGATCACCGCGCTT
TGCAGATGACTCACCCCGAACAGCTGGCGAGCCTGGTAGATGAGGAAGCG
CTCGGGAGGACGAGGCAAAAACGGCGAAAAGTCGATGAGTGCGTTAGCGA
GAAGGTTGGCATCACCAAGAGGATGTACGACACCCTCGACGGATGCATCA
AGAACATCGGTGTGTTTGTTCAGTAAGGTTTTTCCTGTTGTTTTTTTAAA
AGAGGAGGGTTTGTTGTGTTCTAGGGATATTCACTTCCGCTTATCTTGCC
CCGAGAGTTGTGAGCAGTTTTAAATATGTTGTGGAGAAGCGCTTGGTGTG
CTTTGGCATGCCGTGGCGAGATCTTGACCGCACGGACTTGTCGAGCGACT
TCAAGAACAATGCAGTGCACGCTCCTCCGTCTGTCTGTCTGTGATTGAGC
TCTTACAATCTACGATCTAGGTGGTTTTGAAAGCTTGAGAGTTCTCGCGC
AGGCAGCATTCCGCTGTGATGGCGGGGCTACGAAGCTTACGTTTTACGAT
TGGCGCTTTTACTTGGAATCTTGCTGCCGTTTCCGTCTTCGAGCAGATGA
AGTGATCGACAGGCTGGAGAAGGATGTAAAGGAAAACTACGGTGCCATCC
CGGACCTGAGCCTCTTGGCACCAGATGCCACAGCCGAGGTAAAGTTTGGA
ACTCCTTCAGTGCGGATTCCGTTTACCGTTTACCGTTTATAGGCACAAAT
TGCACAATATTTCGTGACTATTATCAATATTATTGTTGTTACACTAGTGC
CTTTTGCCTTTTTTTTTCGCGGTATAGAGCCACGGCCGCGGAGGAATTAT
ATACCGTCCGTCGTGATGTTACGGCTATCCAAGGATTGCGGCGATTCTGA
TCGGGAGCGGTTATGGGATGAAGATGACCGTGCTGTGCTATTGGTACAGT
TGGCAGTGCCAAGGTGGAGGCGCGTGACAATCTCGCGGAAGGGAGAGAAA
TCGTTCAGAACAAGCAAACAACCTGAGCGAGCGCCCAGCCTATTTAGGAA
CCCGGCTCCTTAGCACCGTGTGGTGCCCCGTCTAATTTACTTGAAACGCG
TGGAATATTCAACGAAATTTCAGGCGAAGAAGAACGAACTGGAAGCAGCA
GCAGCAGCAGCGGTGGTGGCGGCAGGAGGGGGAGGGGGATCTCAAGCGGG
AGCCGGGGCGGCCATGAACGCGGTAGCGGGTGCTGGAGGCGGAGGCGTGA
ACGGGTCGGGATTGAGAGGGTTGGTGACGGGAGCCGACGGGGCCGCGAGG
AGAGACGACACGATCGCCGCCAACGAACCCGTTTACTGCATATGCCGCCA
AGTTGGCTGGGGCGATATGGTGAGAGAAAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig89892:695..2478+

>mRNA_H-elongata_contig89892.16481.1 ID=mRNA_H-elongata_contig89892.16481.1|Name=mRNA_H-elongata_contig89892.16481.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig89892:695..2478+ (Himanthalia elongata Himel1 dioecious)
CAGGAGTTCATCGCCATCTGCGCCCATCTTCCGGCAGAGCTCAAGAGAGA
CCTCAAAGAGGTAGCCAGCCTCAACAAATCCACGCACACCCTTACCGCCC
AGCTGAGCAGAGAACAGACGGAGATACTGGAGAAAGCCAAAGGAAAGTTC
AGAGTGCAGGAGTTCATCGCCATCTGCGCCCATCTTCCGGCAGAGCTCAA
GAGAGACCTCAAAGAGGTAGCCAGCCTCAACAAATCCACGCACACCCTTA
CCGCCCAGCTGAGCAGAGAACAGACGGAGATACTGGAGAAAGCCAAAGGA
AAGTTCAGAGTGATGACTCACCCCGAACAGCTGGCGAGCCTGGTAGATGA
GGAAGCGCTCGGGAGGACGAGGCAAAAACGGCGAAAAGTCGATGAGTGCG
TTAGCGAGAAGGTTGGCATCACCAAGAGGATGTACGACACCCTCGACGGA
TGCATCAAGAACATCGATGACTCACCCCGAACAGCTGGCGAGCCTGGTAG
ATGAGGAAGCGCTCGGGAGGACGAGGCAAAAACGGCGAAAAGTCGATGAG
TGCGTTAGCGAGAAGGTTGGCATCACCAAGAGGATGTACGACACCCTCGA
CGGATGCATCAAGAACATCGCAGATGAAGTGATCGACAGGCTGGAGAAGG
ATGTAAAGGAAAACTACGGTGCCATCCCGGACCTGAGCCTCTTGGCACCA
GATGCCACAGCCGAGCAGATGAAGTGATCGACAGGCTGGAGAAGGATGTA
AAGGAAAACTACGGTGCCATCCCGGACCTGAGCCTCTTGGCACCAGATGC
CACAGCCGAGAACGAACTGGAAGCAGCAGCAGCAGCAGCGGTGGTGGCGG
CAGGAGGGGGAGGGGGATCTCAAGCGGGAGCCGGGGCGGCCATGAACGCG
GTAGCGGGTGCTGGAGGCGGAGGCGTGAACGGGTCGGGATTGAGAGGGTT
GGTGACGGGAGCCGACGGGGCCGCGAGGAGAGACGACACGATCGCCGCCA
ACGAACCCGTTTACTGCATATGCCGCCAAGTTGGCTGGGGCGATATGGTG
AGAGAAAGATAGAACGAACTGGAAGCAGCAGCAGCAGCAGCGGTGGTGGC
GGCAGGAGGGGGAGGGGGATCTCAAGCGGGAGCCGGGGCGGCCATGAACG
CGGTAGCGGGTGCTGGAGGCGGAGGCGTGAACGGGTCGGGATTGAGAGGG
TTGGTGACGGGAGCCGACGGGGCCGCGAGGAGAGACGACACGATCGCCGC
CAACGAACCCGTTTACTGCATATGCCGCCAAGTTGGCTGGGGCGATATGG
TGAGAGAAAGATAG
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