mRNA_H-elongata_contig89814.16478.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig89814.16478.1
Unique Name	mRNA_H-elongata_contig89814.16478.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.050e-12
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 1

Query:    1 RILFGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQ-EKEWMGCIMEGLKVF------------VINVDQ--WKIVAQDEGG--WCKTAEQGAEHFMKNWIAAKKVRTRLR 279
            R+LF G VAR  D RLPK LMFGE++GG G  +G  E+ W+ C+ + +K+F            V  V +  W   A+ EGG  W     QGAE FM +W   K+  +R R
Sbjct:  648 RLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQR 757

[Close]

BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5KU62_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU62_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.360e-12
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 1

Query:    1 RILFGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQEKEWMGCIMEGLKVFVINVDQ----WKIVAQDEGGWCKTAEQGAEHFMKNW------IAAKKVRTR 273
            R+ FGGFV RM+D+RLPK ++ G + GG G   GQE +W+  + E L  F +  ++    WK  A++   W    E GA  FM+ W       +AK+ R R
Sbjct:  339 RLCFGGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAR 439

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BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.720e-12
Identity = 44/110 (40.00%), Postives = 58/110 (52.73%), Query Frame = 1

Query:    1 RILFGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQ-EKEWMGCIMEGLKVF------------VINVDQ--WKIVAQDEGG--WCKTAEQGAEHFMKNWIAAKKVRTRLR 279
            R+LF G VAR  D RLPK LMFGE++GG    RG  E+ W+ C+ + +K+F            V  V +  W   A+ EGG  W     QGAE FM +W   K+  +R R
Sbjct:  977 RLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQR 1086

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BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.760e-12
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1

Query:    1 RILFGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQ-EKEWMGCIMEGLKVFV--------------INVDQWKIVAQDEGG--WCKTAEQGAEHFMKNWIAAKKVRTRLR 279
            R+LF G VAR  D RLPK LMFGE++GG    RG  E+ W+ C+ + LK+F               I    W   A+ EGG  W     QGAE FM +W   ++  +R R
Sbjct:  586 RVLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQR 695

[Close]

BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 7.150e-12
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 1

Query:   10 FGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQEKEWMGCIMEGLKVFVINVDQ----WKIVAQDEGGWCKTAEQGAEHFMKNW 246
            F GFV RM+D+RLPK ++ GE+  G G   GQE +W+  + E L  F +  ++    WK  A+D   W    E GA  FM+ W
Sbjct:  114 FAGFVMRMEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRKW 196

[Close]

BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5L2N2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.670e-12
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 1

Query:    1 RILFGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQEKEWMGCIMEGLKVFVINVDQ----WKIVAQDEGGWCKTAEQGAEHFMKNW------IAAKKVRTR 273
            R+ F GFV RM+D+RLPKC+    + GG G   GQE +W+  + E L  F +  ++    WK  A++   W    E GA  FM+ W       +AK+ R R
Sbjct:  311 RLCFAGFVMRMEDSRLPKCMPLEAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAR 411

[Close]

BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.120e-12
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1

Query:    1 RILFGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQ-EKEWMGCIMEGLKVFV--------------INVDQWKIVAQDEGG--WCKTAEQGAEHFMKNWIAAKKVRTRLR 279
            R+LF G VAR  D RLPK LMFGE++GG    RG  E+ W+ C+ + LK+F               I    W   A+ EGG  W     QGAE FM +W   ++  +R R
Sbjct:  480 RLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQR 589

[Close]

BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.150e-12
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 1

Query:    1 RILFGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQ-EKEWMGCIMEGLKVF------------VINVDQ--WKIVAQDEGG--WCKTAEQGAEHFMKNWIAAKKVRTRLR 279
            R+LF G VAR  D RLPK LMFGE++GG    +G  E+ W+ C+ + +K+F            V  V +  W   A+ EGG  W     QGAE FM +W   K+  +R R
Sbjct:  503 RLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQR 612

[Close]

BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.420e-12
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 1

Query:    1 RILFGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQ-EKEWMGCIMEGLKVF------------VINVDQ--WKIVAQDEGG--WCKTAEQGAEHFMKNWIAAKKVRTRLR 279
            R+LF G VAR  D RLPK LMFGE++GG    +G  E+ W+ C+ + +K+F            V  V +  W   A+ EGG  W     QGAE FM +W   K+  +R R
Sbjct:  921 RLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQR 1030

[Close]

BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.520e-12
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 1

Query:    1 RILFGGFVARMDDTRLPKCLMFGEIMGGAGRVRGQ-EKEWMGCIMEGLKVF------------VINVDQ--WKIVAQDEGG--WCKTAEQGAEHFMKNWIAAKKVRTRLR 279
            R+LF G VAR  D RLPK LMFGE++GG    +G  E+ W+ C+ + +K+F            V  V +  W   A+ EGG  W     QGAE FM +W   K+  +R R
Sbjct: 1264 RLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQR 1373

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot

BLAST of mRNA_H-elongata_contig89814.16478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JEX7_9PHAE	1.050e-12	40.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KU62_9PHAE	1.360e-12	37.62	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K7U5_9PHAE	2.720e-12	40.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JKI4_9PHAE	6.760e-12	39.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHK9_9PHAE	7.150e-12	39.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2N2_9PHAE	8.670e-12	36.63	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KA81_9PHAE	9.120e-12	39.09	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K9G5_9PHAE	9.150e-12	39.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KX41_9PHAE	9.420e-12	39.09	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K319_9PHAE	9.520e-12	39.09	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig89814	contig	H-elongata_contig89814:2334..2633 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	300
Cds size	270
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931298.5164344-CDS-H-elongata_contig89814:2333..2603	1622931298.5164344-CDS-H-elongata_contig89814:2333..2603	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig89814 2334..2603 -
1691679778.8527067-CDS-H-elongata_contig89814:2333..2603	1691679778.8527067-CDS-H-elongata_contig89814:2333..2603	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig89814 2334..2603 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931298.5342827-UTR-H-elongata_contig89814:2603..2633	1622931298.5342827-UTR-H-elongata_contig89814:2603..2633	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig89814 2604..2633 -
1691679778.862343-UTR-H-elongata_contig89814:2603..2633	1691679778.862343-UTR-H-elongata_contig89814:2603..2633	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig89814 2604..2633 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig89814.16478.1	prot_H-elongata_contig89814.16478.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig89814 2334..2603 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig89814:2334..2633-
coding sequence from alignment at H-elongata_contig89814:2334..2633-

protein sequence of mRNA_H-elongata_contig89814.16478.1

>prot_H-elongata_contig89814.16478.1 ID=prot_H-elongata_contig89814.16478.1|Name=mRNA_H-elongata_contig89814.16478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MDDTRLPKCLMFGEIMGGAGRVRGQEKEWMGCIMEGLKVFVINVDQWKIV
AQDEGGWCKTAEQGAEHFMKNWIAAKKVRTRLRHAPACLN

mRNA from alignment at H-elongata_contig89814:2334..2633-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig89814.16478.1 ID=mRNA_H-elongata_contig89814.16478.1|Name=mRNA_H-elongata_contig89814.16478.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig89814:2334..2633- (Himanthalia elongata Himel1 dioecious)
CGGATCCTGTTCGGGGGATTCGTGGCGCGCATGGACGACACGAGACTGCC
GAAGTGCCTAATGTTCGGAGAAATCATGGGGGGCGCGGGTCGCGTTAGGG
GACAGGAAAAAGAGTGGATGGGGTGTATTATGGAAGGCCTCAAAGTTTTC
GTTATCAACGTTGACCAGTGGAAGATTGTCGCCCAGGACGAGGGGGGGTG
GTGCAAGACGGCGGAACAAGGAGCGGAACATTTCATGAAGAATTGGATCG
CTGCAAAGAAAGTCAGGACTCGACTACGGCATGCACCAGCATGTCTGAAC

Coding sequence (CDS) from alignment at H-elongata_contig89814:2334..2633-

>mRNA_H-elongata_contig89814.16478.1 ID=mRNA_H-elongata_contig89814.16478.1|Name=mRNA_H-elongata_contig89814.16478.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig89814:2334..2633- (Himanthalia elongata Himel1 dioecious)
ATGGACGACACGAGACTGCCGAAGTGCCTAATGTTCGGAGAAATCATGGG
GGGCGCGGGTCGCGTTAGGGGACAGGAAAAAGAGTGGATGGGGTGTATTA
TGGAAGGCCTCAAAGTTTTCGTTATCAACGTTGACCAGTGGAAGATTGTC
GCCCAGGACGAGGGGGGGTGGTGCAAGACGGCGGAACAAGGAGCGGAACA
TTTCATGAAGAATTGGATCGCTGCAAAGAAAGTCAGGACTCGACTACGGC
ATGCACCAGCATGTCTGAACATGGACGACACGAGACTGCCGAAGTGCCTA
ATGTTCGGAGAAATCATGGGGGGCGCGGGTCGCGTTAGGGGACAGGAAAA
AGAGTGGATGGGGTGTATTATGGAAGGCCTCAAAGTTTTCGTTATCAACG
TTGACCAGTGGAAGATTGTCGCCCAGGACGAGGGGGGGTGGTGCAAGACG
GCGGAACAAGGAGCGGAACATTTCATGAAGAATTGGATCGCTGCAAAGAA
AGTCAGGACTCGACTACGGCATGCACCAGCATGTCTGAAC