mRNA_H-elongata_contig89728.16470.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89728.16470.1
Unique NamemRNA_H-elongata_contig89728.16470.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: UPI0011B655F8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B655F8)

HSP 1 Score: 53.9 bits (128), Expect = 2.040e-7
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSGIMV 117
            W  NEHKYP I   AR  LA+P TSVPSER+FS +G +V
Sbjct:  171 WRSNEHKYPHIAKLARRYLAVPGTSVPSERVFSTAGDIV 209
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: T1G7Q5_HELRO (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G7Q5_HELRO)

HSP 1 Score: 50.8 bits (120), Expect = 3.580e-7
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSG 108
            WA+N  ++P I   AR  LAIPATSVPSE+IFS SG
Sbjct:   24 WADNASRFPTIAKVARKYLAIPATSVPSEQIFSMSG 59
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: A0A8B8BD94_CRAVI (zinc finger BED domain-containing protein 1-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BD94_CRAVI)

HSP 1 Score: 53.5 bits (127), Expect = 3.880e-7
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSGIMV 117
            W  NEHKYPL+ +  +  L +PATSVPSER+FS +G +V
Sbjct:  596 WKTNEHKYPLLSAVGKKYLCVPATSVPSERVFSTAGDIV 634
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: UPI001E1E09A0 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E09A0)

HSP 1 Score: 53.5 bits (127), Expect = 3.880e-7
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSGIMV 117
            W +NE K+P I   A+ V+A+PATSVPSERIFS +G+++
Sbjct:  507 WRDNEEKFPKIAIVAKRVIAVPATSVPSERIFSATGLLI 545
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: UPI001E1D906A (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D906A)

HSP 1 Score: 53.1 bits (126), Expect = 4.400e-7
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSGIMV 117
            W +NE ++P I   A+ VLA+PATSVPSERIFS +G+++
Sbjct:  188 WRDNEERFPKIAIVAKRVLAVPATSVPSERIFSATGLLI 226
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: A0A2D5SQS3_9DELT (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D5SQS3_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 8.380e-7
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSGIMV 117
            W +N+ KYP++   AR+ L IPATS PSER+FSQ  +++
Sbjct:    7 WLQNKEKYPVLSLIARNFLQIPATSAPSERVFSQGALII 45
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: A0A5J5EHF1_9PEZI (Ribonuclease H-like domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EHF1_9PEZI)

HSP 1 Score: 52.4 bits (124), Expect = 9.900e-7
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSGIMV 117
            W +NEH+YP +   AR  LAIPA+SVP+ER+FS++G ++
Sbjct:  115 WDDNEHRYPHLARLARDYLAIPASSVPAERVFSRAGDLI 153
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: A0A3N0YHS3_ANAGA (Zinc finger BED domain-containing protein 1 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YHS3_ANAGA)

HSP 1 Score: 52.4 bits (124), Expect = 9.940e-7
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSGIMV 117
            W  N HKYP I   A++ L +PATSVPSER+FS +G+++
Sbjct:  461 WTTNAHKYPRIAKLAKAYLCVPATSVPSERVFSAAGLIM 499
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: A0A2Z6RJ47_9GLOM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RJ47_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 1.110e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSG 108
            W++NE+++PL+   AR  LAIPATS PSER+FS +G
Sbjct:  175 WSKNENRFPLLSKMARKYLAIPATSTPSERLFSDAG 210
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BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Match: UPI00146A20A2 (zinc finger BED domain-containing protein 1-like n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146A20A2)

HSP 1 Score: 52.0 bits (123), Expect = 1.230e-6
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSG 108
            WAEN H++P +   +RS LAIPATS PSER+FS +G
Sbjct:  201 WAENAHRFPRVPKLSRSYLAIPATSTPSERVFSLAG 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89728.16470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0011B655F82.040e-761.54zinc finger BED domain-containing protein 1-like n... [more]
T1G7Q5_HELRO3.580e-763.89Dimer_Tnp_hAT domain-containing protein n=1 Tax=He... [more]
A0A8B8BD94_CRAVI3.880e-756.41zinc finger BED domain-containing protein 1-like n... [more]
UPI001E1E09A03.880e-756.41E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenar... [more]
UPI001E1D906A4.400e-756.41E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenar... [more]
A0A2D5SQS3_9DELT8.380e-751.28Dimer_Tnp_hAT domain-containing protein n=1 Tax=De... [more]
A0A5J5EHF1_9PEZI9.900e-753.85Ribonuclease H-like domain-containing protein n=1 ... [more]
A0A3N0YHS3_ANAGA9.940e-753.85Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A2Z6RJ47_9GLOM1.110e-658.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rh... [more]
UPI00146A20A21.230e-661.11zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89728contigH-elongata_contig89728:388..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931297.806467-CDS-H-elongata_contig89728:387..5071622931297.806467-CDS-H-elongata_contig89728:387..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89728 388..507 -
1691679778.6276255-CDS-H-elongata_contig89728:387..5071691679778.6276255-CDS-H-elongata_contig89728:387..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89728 388..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89728.16470.1prot_H-elongata_contig89728.16470.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89728 388..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89728.16470.1

>prot_H-elongata_contig89728.16470.1 ID=prot_H-elongata_contig89728.16470.1|Name=mRNA_H-elongata_contig89728.16470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
WAENEHKYPLIGSKARSVLAIPATSVPSERIFSQSGIMV*
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mRNA from alignment at H-elongata_contig89728:388..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89728.16470.1 ID=mRNA_H-elongata_contig89728.16470.1|Name=mRNA_H-elongata_contig89728.16470.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig89728:388..507- (Himanthalia elongata Himel1 dioecious)
TGGGCAGAAAACGAGCACAAATATCCGCTCATTGGCAGCAAAGCTCGATC
AGTCCTGGCTATTCCTGCTACATCAGTCCCATCTGAGCGCATATTCTCAC
AGAGTGGTATAATGGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig89728:388..507-

>mRNA_H-elongata_contig89728.16470.1 ID=mRNA_H-elongata_contig89728.16470.1|Name=mRNA_H-elongata_contig89728.16470.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig89728:388..507- (Himanthalia elongata Himel1 dioecious)
TGGGCAGAAAACGAGCACAAATATCCGCTCATTGGCAGCAAAGCTCGATC
AGTCCTGGCTATTCCTGCTACATCAGTCCCATCTGAGCGCATATTCTCAC
AGAGTGGTATAATGGTTTGATGGGCAGAAAACGAGCACAAATATCCGCTC
ATTGGCAGCAAAGCTCGATCAGTCCTGGCTATTCCTGCTACATCAGTCCC
ATCTGAGCGCATATTCTCACAGAGTGGTATAATGGTTTGA
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