mRNA_H-elongata_contig8971.16468.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A6H5KVH9_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVH9_9PHAE) HSP 1 Score: 247 bits (631), Expect = 1.340e-77 Identity = 132/200 (66.00%), Postives = 162/200 (81.00%), Query Frame = 1
Query: 37 TGDVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDK 636
+GDVKYWD++YGKTLD+L+ FI+T E GSG+AR +A+ A+ +R+ GM+R+Y+LEIKL+ +P KAHY EKSQKD+R LQ+R DA +A SG S RDELFGGRRD+E+G + G ++AE+KL EAD YQDKTE AYKNMIGVLQETE TAD TA+EL NQREQ+ IT+ EIDS+LTRADRLVKVFSKRMMTDK
Sbjct: 3 SGDVKYWDTSYGKTLDQLDGFIATMESGSGDAREDAMSEASRSLKRLAGMRRSYNLEIKLIKDPNMKAHYNLEKSQKDSRYATLQSRFDAAKA-SGDSTRDELFGGRRDVESGEAQG--KSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDK 199
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A835Z1V1_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V1_9STRA) HSP 1 Score: 152 bits (385), Expect = 7.800e-41 Identity = 93/201 (46.27%), Postives = 131/201 (65.17%), Query Frame = 1
Query: 40 GDVKYWDSNYGKTLDELEAFISTAEKGSGEARNEA-LESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
GDVKYWD++YGK LDEL + A KG+ A EA + +A RR+ GMKR+Y+LEIKLM + KA Y EK+ KDA+LT L+ +L+ + + S + LF GR E +TA+ KLD+A+ Q+KTE YKN+I VL++TE+ TA L QR Q++ IT+ +E+D MLTRA++L+ VFS+R+ TDK+
Sbjct: 2 GDVKYWDTSYGKALDELSDQVK-AVKGASAAEKEAKIATATQTVRRLQGMKRSYNLEIKLMRDATQKASYQEEKNAKDAKLTELEAQLEEAKNKPAGSDKVSLFSGRAAEEPK-----VKTADQKLDQAEIIQNKTEAKYKNIITVLEQTEEVGSATAATLQEQRAQISEITENVMEMDGMLTRANKLIMVFSRRLATDKM 196
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A7S2V573_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V573_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 3.840e-14 Identity = 61/209 (29.19%), Postives = 105/209 (50.24%), Query Frame = 1
Query: 46 VKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDK-VRFIILIPKCI 669
++YWD +D+ E + + E EA + + + G+K+++ E++L+ + + HY + + + R++AL RL+ +R K + G ++ G G ++ L +A+ QD E+AY L E Q A T EL NQRE++ IT+ A ID +LTRADRL++ F +RM TD+ ++ I C+
Sbjct: 1 MEYWDERINSLIDQGEREAEKLDMDN-ETAMEACQEIEHCLQSAKGVKQSFTTELRLLGDKVEEQHYKMKLRRYEERMSALTERLNG--SREAIEKEHLMRGAQQRRGGGGFGDSDDPNDAMLGKAEKLQDDIEDAYGRAENDLDEIRQLAPETLAELRNQREKIQDITETAERIDDLLTRADRLLRTFGRRMATDRLIQVFFFINACL 206
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: W7TW41_9STRA (Soluble nsf attachment protein receptor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW41_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.070e-13 Identity = 59/207 (28.50%), Postives = 110/207 (53.14%), Query Frame = 1
Query: 43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQK-DARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDK-VRFIILI 657
D++YWD L ELE I + G + + + +RV +K+ Y+ E+++ + + H EK + D R+ AL+T L + A++ +K+ LF G + + + T ++ L EA QDKTE + ++ +G+++ ++Q T E+ Q+EQ+ IT ++ LTRAD+L++ F +R+ TDK ++F ++
Sbjct: 3 DIEYWDGELSSKLAELEQTIGNLKSMRGGDKEAGIAKSEATLKRVREVKKGYNYEMRMSLKNDPRRHEYAEKLKAVDERIAALETEL--KWAKTEANKKS-LFKGSKGADGSGTLNENATNDTYLTEAKKIQDKTEASLQSALGMVEASKQVGANTVDEVNRQKEQIAEITDTVEAMEDGLTRADKLIRAFGRRIATDKFIQFFFVL 206
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A7S4A3K9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3K9_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 9.140e-13 Identity = 54/199 (27.14%), Postives = 106/199 (53.27%), Query Frame = 1
Query: 43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
D+ YW +Y ++D+ + +++ + R +++A +R G+K++Y LE++L+ + K +Y + D R L+ R++ + R+ +R L ET + G + + LD+A QDKTE + +++ +++ T EL Q++Q+ ++ + I+ L+RADRL++ F+KRMMTDK+
Sbjct: 62 DIDYWSDSYRSSIDDADRLVTSLGACEPDERLSIIDAADAKLKRAGGIKKSYKLELRLLRDRELKRNYEESLRELDDRRDELKRRVEEHRERT---ERSTLL-----QETPAAFGEHKGNDYYLDKAHSLQDKTENTLERTTQMIEASKEVGASTLSELERQQDQIKDVSADIMLIEDNLSRADRLIRNFTKRMMTDKL 252
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: F0YKX2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKX2_AURAN) HSP 1 Score: 73.9 bits (180), Expect = 1.340e-10 Identity = 58/204 (28.43%), Postives = 105/204 (51.47%), Query Frame = 1
Query: 43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALE-----LANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
DV+YW +Y +DEL +S+ + SG + R +K++Y LE++L+ + K + + + D R L+ L+ E R G+++R+ L D G +S L++A QD+T++A I +++ +++ + T E L +Q+EQ+ I+ + I+ L RAD+L++ F+KRMMTDK+
Sbjct: 4 DVEYWSDSYAGAVDELAVRVSSIRELSGCDFRDIAAECDTKLSRAKSIKKSYCLEMRLLRDQKIKGLHNCKLKELDRRCAELE--LEIEFVRGGRARRELLTSSSVDH------AGCDDNKSCLNDAAILQDQTQDALSRTINLVEASKEVGNSTINEHTILLLEHQQEQVKDISTDVMLIEDNLLRADKLIRNFTKRMMTDKL 199
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A485L062_9STRA (Aste57867_13425 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L062_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.300e-10 Identity = 56/203 (27.59%), Postives = 108/203 (53.20%), Query Frame = 1
Query: 43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRR----DIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
++ Y+D + L++L+ ++ K R+E L A + V +K+ + L ++ +T+ Y + AR+ L TR + + A+S +++R+ LFG + TGN+ L++A Q KTE + KN +++ +++ A T L QR Q+NAIT++ + +D +TRA++L++ F++RM TD++
Sbjct: 3 EIAYYDGDLSDALEKLDQIMAKLAKAPPGVRSEVLAEAEKKLKEVIDLKKGFSLALRQVTDREEIKTYREKNDVYAARVEEL-TR-EVKWAKS-ETERNGLFGDAKAKASTAPTGNA--------DMLNKAQELQTKTESSLKNTQKMIESSKEVALATGETLREQRNQLNAITEEVMRMDDGITRANKLMRTFTRRMATDRL 194
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A067BTK0_SAPPC (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BTK0_SAPPC) HSP 1 Score: 66.2 bits (160), Expect = 8.140e-9 Identity = 57/203 (28.08%), Postives = 102/203 (50.25%), Query Frame = 1
Query: 43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRR----DIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
++ Y+D + + L L+ ++ K R E L A + V +K+ Y L ++ +T+ + + AR+ L TR + + A+S +++R+ LFG + + TGN L +A Q KTE + KN +++ ++ A T L QR Q+NAIT++ + +D L RA++L++ F +RM TD+V
Sbjct: 3 EINYYDGDLSEALSTLDGIMARLAKAPPAVRGEVLAEAEKKLKEVIDLKKGYTLALRQVTDREEIKVFREKNDVYAARVEEL-TR-EVKWAKS-ETERNGLFGDAKVNAAKMPTGN--------REMLGKAQEIQTKTEMSLKNTQKMVEASKDVALATGEVLREQRNQINAITEEVMRMDDGLARANKLLRTFGRRMATDRV 194
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A6G0W6N5_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6N5_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.210e-8 Identity = 54/199 (27.14%), Postives = 106/199 (53.27%), Query Frame = 1
Query: 43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
++ Y+D + L +L+ ++ K ++E L A + V +K+ + L ++ +T+ Y + AR+ L TR + + A+S +++R+ LFG D + S AE L++A Q KTE + KN +++ +++ A T L QR Q+NAIT++ + +D + RA++L++ F++RM +D++
Sbjct: 3 EIAYYDGDLSDALTKLDQIMAKLAKAPPGVKSEVLAEAEKKLKEVIDLKKGFSLALRQVTDREDLKTYREKNDVYTARVEEL-TR-EVKWAKS-ETERNGLFG---DAKAKASKAPTGNAEM-LNKAQELQTKTESSLKNTQKMVESSKEVALATGEVLREQRNQLNAITEEVMRMDDGIARANKLMRTFTRRMASDRL 194
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A024TLV5_9STRA (t-SNARE coiled-coil homology domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLV5_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.960e-8 Identity = 54/203 (26.60%), Postives = 105/203 (51.72%), Query Frame = 1
Query: 43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRR----DIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
++ Y+D + L +L ++ K ++E L A + V +K+ + L ++ +T+ Y + AR+ L TR + + A+S ++ R+ LFG + + TGN+ L++A Q KTE + KN +++ +++ A T L QR Q+NAIT++ + +D + RA++L++ F++RM TD++
Sbjct: 3 EIAYYDGDLSDALTKLNQIMAKLAKAPPGIKSEVLVEAEKKLKEVIDLKKGFSLALRQVTDREEIKSYREKNDVYAARVEEL-TR-EVKWAKS-ETDRNGLFGDAKAKASKVPTGNT--------DLLNKAQELQGKTEVSLKNTQKMIENSKEVALATGETLREQRNQLNAITEEVMRMDDGVARANKLMRTFTRRMATDRL 194 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8971.16468.1 >prot_H-elongata_contig8971.16468.1 ID=prot_H-elongata_contig8971.16468.1|Name=mRNA_H-elongata_contig8971.16468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp MARSGGSNTGDVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANback to top mRNA from alignment at H-elongata_contig8971:6404..9642+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8971.16468.1 ID=mRNA_H-elongata_contig8971.16468.1|Name=mRNA_H-elongata_contig8971.16468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3239bp|location=Sequence derived from alignment at H-elongata_contig8971:6404..9642+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8971:6404..9642+ >mRNA_H-elongata_contig8971.16468.1 ID=mRNA_H-elongata_contig8971.16468.1|Name=mRNA_H-elongata_contig8971.16468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig8971:6404..9642+ (Himanthalia elongata Himel1 dioecious)back to top |