mRNA_H-elongata_contig89651.16464.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig89651.16464.1 vs. uniprot
Match: A0A6H5JBJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ3_9PHAE) HSP 1 Score: 418 bits (1075), Expect = 8.690e-130 Identity = 216/376 (57.45%), Postives = 252/376 (67.02%), Query Frame = 1
Query: 1 IILFRLMDNVIAGTSAEDGMVTVMVSLTSQAQESGAALYGGQVTDHLDPSWGIVAVNLDVSLRLTTAIEIIGGNDVLEGTKHFSLTLPWLYPPCRRPRYYLNQGAKRWCDNGRSTGNTNVTESRYCQWENWFITDISEGLPSLRPERVSVLSVKRAATDAVLVQFRVG-----------------------------------EPSDYATEMTVDEAVAELLNQLRNASSAIFEGNVTFSIDPAWGLSGEGGTAREYSPHLPHEVYDDHLGNSYERCKDVHRCNRAWTRYNSTTREVNYTTQAFRDGLHMTAALFADFEDWRMGTFGWLMHGASDAREADYSNNV---HGVREA---APKGAHFDPKDFSSLGPRV 1005
I+LFRL+DNVIAGT EDG VTVM LT QAQESG+ LY G VTD +DPSWG+VAV+LDVSLRLT AIE+IGG+ V EG YYLNQGA+ WC+ GR+ ++ +T S YCQWE WFI D+S L P+RV VL VKRAA DAVLV FR+G EPSDYATE+ VDEA AELL Q+RN SSA+F GNVT ++DP WGLSG+GG RE SP+LPH+VYDDH + YERCKDVHRCNRAW Y+S +R V YTTQAFR GLH+T LFADFEDWRMGTFGW M GA D R+ D+ + +G EA AP+G HFDP++FSSLGPRV
Sbjct: 110 IVLFRLVDNVIAGTFGEDGAVTVMTELTVQAQESGSTLYSGLVTDRIDPSWGVVAVSLDVSLRLTMAIEVIGGSGVQEG-------------------YYLNQGAQGWCEAGRAASDSTITGSDYCQWEAWFIADVSGCLALQNPDRVRVLFVKRAAADAVLVHFRIGKLLLYWPSCLTEGEREVPKKLSRTNSSISTLGAAGEPSDYATEIAVDEAAAELLVQIRNVSSALFAGNVTVAVDPTWGLSGDGGVPRESSPYLPHQVYDDHRDDDYERCKDVHRCNRAWIHYDSNSRSVKYTTQAFRGGLHVTTGLFADFEDWRMGTFGWTMRGAPDPRDGDFDDGYGSGNGENEAGITAPRGGHFDPRNFSSLGPRV 466
BLAST of mRNA_H-elongata_contig89651.16464.1 vs. uniprot
Match: D8LIJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ2_ECTSI) HSP 1 Score: 323 bits (827), Expect = 2.110e-96 Identity = 177/341 (51.91%), Postives = 208/341 (61.00%), Query Frame = 1
Query: 1 IILFRLMDNVIAGTSAEDGMVTVMVSLTSQAQESGAALYGGQVTDHLDPSWGIVAVNLDVSLRLTTAIEIIGGNDVLEGTKHFSLTLPWLYPPCRRPRYYLNQGAKRWCDNGRSTGNTNVTESRYCQWENWFITDISEGLPSLRPERVSVLSVKRAATDAVLVQFRVGEPSDYATEMTVDEAVAELLNQLRNASSAIFEGNVTFSIDPAWGLSGEGGTAREYSPHLPHEVYDDHLGNSYERCKDVHRCNRAWTRYNSTTREVNYTTQAFRDGLHMTAALFADFEDWRMGTFGWLMHGASDAREADYS------NNVHGVREAAPKGAHFDPKDFSSLGPRV 1005
I+LFRL+DNVIAGT EDG VT M LT+QAQESG+ LY G VTD +DPSWG+VAV+LDVSLRLT AIE+IGG+ V EG + LP + R R L + P RP EPS+YATE+ VDEA AELL Q+RN SSA+F GNVT ++DP WGLSG+GG RE SP+LPH+VYDDH + YERCKDVHRCNRAW Y+S +R VNYT QAFR GLH+T L A+FEDWRMGTFGW M GA D R D+ N + R AP+G HFDP++FSSLGPRV
Sbjct: 105 IVLFRLVDNVIAGTFGEDGAVTAMTELTAQAQESGSTLYSGLVTDRIDPSWGVVAVSLDVSLRLTMAIEVIGGSGVQEGER----LLP-VGSLVHRRRLRLPRS------------------------------------PEPRPR----------------------EPSNYATEIAVDEAAAELLAQVRNVSSALFAGNVTVAVDPTWGLSGDGGVPRESSPYLPHQVYDDHRDDDYERCKDVHRCNRAWIHYDSNSRSVNYTAQAFRGGLHVTTGLSANFEDWRMGTFGWAMRGAPDPRNGDFDDGYGSGNGENEARITAPRGGHFDPRNFSSLGPRV 382
BLAST of mRNA_H-elongata_contig89651.16464.1 vs. uniprot
Match: F0YFP0_AURAN (MFS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFP0_AURAN) HSP 1 Score: 197 bits (500), Expect = 1.220e-52 Identity = 130/356 (36.52%), Postives = 191/356 (53.65%), Query Frame = 1
Query: 1 IILFRLMDNVIAGTSAEDGMVTVMVSLTSQAQESGAALYGGQVTDHLDPSWGIVAVNLDVSLRLTTAIEIIGGNDVL----EGTKHFSLTLP----WLYPPCRRPRYYLNQGAKRWCDNGRSTGNTNVTESRYCQWENWFITDISEGLPSLRPERVSVLSVKRAATDAVLVQFRVGEPSDYATE-MTVDEAVAELLNQLRNASSAIFEGNVTFSIDPAWGLSGEGG----TAREYSPH-------LPHEVYDDH-LGNSYERCKDVHRCNRAWTRYNSTTREVNYTTQAFRDGLHMTAALFADFEDWRMGTFGWLMHGASDAREADYSNNVHGVREAAPKGAHFDPKDFSSLGPRV 1005
I+ FR+++ + +S + + + T Q Q +G+ L G VT LD WG VA++ D+SLRL ++E++G D++ EG T W + LNQGA RWC+ + ES YC++E +F DIS L + +RV VL ++ A+ D+VL FR+ +D A+E V AVA+L++Q+++ASS++F GNVT +DPAWG+SG G T+ E+ P+ LP Y H L YERCK RC R + Y+ +T+Q + G H+ A LFA FE+WR G+ GW G+S + GV AP+GAHF P F LGP++
Sbjct: 622 IVRFRMLEEI---SSTDVSVAAAVRDFTDQTQHAGSKLLTGNVTGALDRHWGAVALDWDMSLRLMYSMEVVG-QDLIHQAGEGRTDMHATSDGHRAWGHKT-------LNQGATRWCEEEAAP------ESAYCEFERYFEEDISRAL-GVHRDRVEVLFIRPASPDSVLAHFRIFPTTDTASEGNVVAAAVADLVDQVQDASSSLFGGNVTVRVDPAWGVSGVDGAPRTTSSEHIPYAARGNESLPFHGYAAHALSPGYERCKATQRCARGYEHYDVAAAAYYHTSQVYAGGAHVPADLFAGFENWRSGSHGWAPRGSSWSGLNGSVPGGEGV--GAPRGAHFAPMRFDRLGPQI 957
BLAST of mRNA_H-elongata_contig89651.16464.1 vs. uniprot
Match: A0A8J2SVR8_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVR8_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.320e-43 Identity = 121/338 (35.80%), Postives = 173/338 (51.18%), Query Frame = 1
Query: 64 TVMVSLTSQAQESGAALYGG----QVTDHLDPSWGIVAVNLDVSLRLTTAIEIIGGN--------DVLEGTKHFSLTLPWLYPPCRRPRYYLNQGAKRWCDNGR-STGNTNV--TESRYCQWENWFITDISEGLPSLRPERVSVLSVKRAATDAVLVQFRVGEPSDYATEMTVDEAVAELLNQLRNASSAIFEGNVTFSIDPAWGLSGEGGTAREY-SPHLPHEV----------YDDH-LGNSYERCKDVHRCNRAWTRYNSTTREVNYTTQAFRDGLHMTAALFADFEDWRMGTFGWLMHGASDAREADYSNNVHGVREAAPKGAHFDPKDFSSLG 996
+V+ LT+Q Q + L+ G +VT D WG+VA++ D+SLRL +++++ + E +HF + + LN+G +R+C+ ++G T T S YC+WEN+F D+S L + RV VL+V+ AA D VL FR+ T V + V++LL Q+R+ +S +++GNVT +DP+WG+SG GGT R+ S HLP+ V Y H + +YERCK RC R + Y +TTQ F G H A LFA FEDWR+GT GW G AR +N VR GAH P LG
Sbjct: 171 SVVRDLTNQTQFLDSPLFAGDRAKKVTAATDRHWGLVALDWDMSLRLQFSMDVVSNPAEHLQQDAGLGEAAEHFEASKHRAFG-----HMTLNRGLERFCEAAAGASGRTEASHTASAYCEWENYFEEDVSRAL-DIERHRVEVLAVRPAAPDQVLAHFRIFPTWSGGTP--VADCVSDLLEQVRDPTSRLYDGNVTVRVDPSWGVSGVGGTPRKRTSDHLPYAVRGNSSLPYHGYAAHSINEAYERCKATQRCARGYEHYYVENATRYHTTQVFAGGAHRHADLFAPFEDWRVGTGGWGPRGF--ARWDGTANATGAVR-----GAHVAPMRLKRLG 493
BLAST of mRNA_H-elongata_contig89651.16464.1 vs. uniprot
Match: K0SSJ0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SSJ0_THAOC) HSP 1 Score: 148 bits (374), Expect = 7.530e-38 Identity = 98/271 (36.16%), Postives = 134/271 (49.45%), Query Frame = 1
Query: 79 LTSQAQESGAALYGGQVTDHLDPSWGIVAVNLDVSLRLTTAIEIIGGNDVLEGTKHFSLTLPWLYPPCRRPRYYLNQGAKRWCDNGRSTGNTNVTESRYCQWENWFITDISEGLPSLRPERVSVLSVKRAATDAVLVQFRVGEPSDYA----TEMTVDEAVAELLNQLRNASSAIFEGNVTFSIDPAWGLSGEGGTAREYSPHLPHEVYDDHLGNSYERCKDVHRCNRAWTRYNSTTREVNYTTQAFRDGLHMTAALFADFEDWRMGTFGW 879
LT QE + LY G+VT + P G+VA D +++L +I I+GG+D + H YLNQGA + C +G TNV ES YCQ+E D++ L L + VL VK A +V+V FR+ + E V +A+L Q + S +F GNV++ I+P WG+SGE R ++ +L D ++YERCK HRC RA YN T YT Q + G LF DFEDWR G+ GW
Sbjct: 143 LTKMVQEPHSPLYDGEVTRAVVPLHGLVAPQWDGTIQLGYSISIVGGDDAVIDPLHGK---------------YLNQGALQAC-----SGQTNVQESEYCQFERHLRRDMALAL-GLEEAQFVVLFVKEADLQSVVVTFRIVPIGSFGGGGQDEQWVKTKLADLSAQSVDPQSLLFTGNVSYKINPNWGVSGESKRPRAFTQYLSRPAPDTPT-DTYERCKSTHRCPRARIEYNQTFASSVYTAQEYAGGTSNHVGLFMDFEDWRKGSRGW 391
BLAST of mRNA_H-elongata_contig89651.16464.1 vs. uniprot
Match: A0A7S2EE48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EE48_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.200e-23 Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 583 SAIFEGNVTFSIDPAWGLSGEGGTAREYSPHLPHEVYDDHLGNSYERCKDVHRCNRAWTRYNSTTREVNYTTQAFRDGLHMTAALFADFEDWRMGTFGW 879
SA++ GNVTF +DP WG+S + G+ R + ++ H D + N YERCK H C+R W+ YN + +YT Q F G H LFADFEDWR GT GW
Sbjct: 3 SALYRGNVTFRVDPTWGVSKDFGSRRNDTKYI-HRPLQDTVSNPYERCKASHTCSRGWSHYNQSAALNDYTMQHFAGGEHTKIPLFADFEDWRQGTRGW 100
BLAST of mRNA_H-elongata_contig89651.16464.1 vs. uniprot
Match: A0A2R5GFB1_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFB1_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.200e-12 Identity = 44/96 (45.83%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 715 YERCKDVHRCNRAWTRYNSTTREVNYTTQAFRDGLHMTAALFADFEDWRMGTFGWLMHG-ASDAREADYSNNVHGVREAAPKGAHFDPKDFSSLGP 999
YERCK+ HRC RA+TRYN V++ + AF G A LFADFEDW GT W G ASD+ ADY AHF+ D++ LGP
Sbjct: 42 YERCKETHRCPRAFTRYNVEQANVSFASAAFAQGEEEHAHLFADFEDWHQGTRFWNDVGSASDSETADY--------------AHFNSFDYALLGP 123
BLAST of mRNA_H-elongata_contig89651.16464.1 vs. uniprot
Match: A0A7S3MI46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MI46_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 7.760e-6 Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 40 TSAEDGMVTVMVSLTSQAQESGAALYGG-QVTDHLDPSWGIVAVNLDVSLRLTTAIEIIGGNDVLEG 237
+++E ++ + LT Q Q + +ALY G VT +D WG+ V DVSL+LT AI++IGGN V +G
Sbjct: 136 STSEPTLLEAIADLTQQIQVNTSALYTGTNVTSEIDSQWGLDVVTWDVSLKLTYAIDVIGGNAVKDG 202 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89651.16464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig89651.16464.1 >prot_H-elongata_contig89651.16464.1 ID=prot_H-elongata_contig89651.16464.1|Name=mRNA_H-elongata_contig89651.16464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp MDNVIAGTSAEDGMVTVMVSLTSQAQESGAALYGGQVTDHLDPSWGIVAVback to top mRNA from alignment at H-elongata_contig89651:753..2376- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig89651.16464.1 ID=mRNA_H-elongata_contig89651.16464.1|Name=mRNA_H-elongata_contig89651.16464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1624bp|location=Sequence derived from alignment at H-elongata_contig89651:753..2376- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig89651:753..2376- >mRNA_H-elongata_contig89651.16464.1 ID=mRNA_H-elongata_contig89651.16464.1|Name=mRNA_H-elongata_contig89651.16464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at H-elongata_contig89651:753..2376- (Himanthalia elongata Himel1 dioecious)back to top |