mRNA_H-elongata_contig8962.16459.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 135 bits (339), Expect = 9.940e-38 Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 1
Query: 1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGK-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 408
+YV+VARVR+ G KL TWTGPWRVV +HV V++I G+ ++VHV R+R YADS L V ++++VFQ + QGE EM ++++G PA G Y V++ W G E++E TW+P+S IY DAP++++Q+L +M
Sbjct: 19 DYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 153
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 135 bits (339), Expect = 3.320e-35 Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 1
Query: 1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGK-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 408
+YV+VARVR+ G KL TWTGPWRVV +HV V++I G+ ++VHV R+R YADS L V ++++VFQ + QGE EM ++++G PA G Y V++ W G E++E TW+P+S IY DAP++++Q+L +M
Sbjct: 274 DYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 408
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 135 bits (339), Expect = 4.580e-34 Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 1
Query: 1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGK-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 408
+YV+VARVR+ G KL TWTGPWRVV +HV V++I G+ ++VHV R+R YADS L V ++++VFQ + QGE EM ++++G PA G Y V++ W G E++E TW+P+S IY DAP++++Q+L +M
Sbjct: 1497 DYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 1631
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.240e-17 Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = 1
Query: 25 RKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 408
R V L G + +V HV V++I +GE ++VHV R+R YAD+ L + E++EVFQ QGEFEMA ++ + G + V++ WVG + EE TWE +S ++ AP++++ +L R+
Sbjct: 1584 RASARVGSLPDFVVGDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELRRL 1710
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.340e-14 Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 393
++VL +RV KL+ W GP+RVV +H ++E + T + EVH R++ Y DS L V E++E + K + +++ +P ++ VQ+AW+GLED E +WEP+ IYAD P +++
Sbjct: 229 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQE 355
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.160e-14 Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 393
++VL +RV KL+ W GP+RVV +H +++ + T + EVH R++ Y DS L V E++E + K + +++ +P ++ VQ+AW+GLED E +WEP+ IYAD P +++
Sbjct: 852 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQE 978
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.290e-14 Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 393
++VL +RV KL+ W GP+RVV +H +++ + T + EVH R++ Y DS L V E++E + K + +++ +P ++ VQ+AW+GLED E +WEP+ IYAD P +++
Sbjct: 1268 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQE 1394
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 4.580e-13 Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 393
++VL +RV KL+ W GP+RVV +H +V+ + T + EVH R++ Y DS L V E++E QG V+ V ++ VQ+AW+GLED E +WEP+ +IY D P +++
Sbjct: 1083 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELKE---HVAKQGI-----VLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVPTKVQE 1204
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 2.630e-11 Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 58 TWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVI 261
TWTGPWR+V HV V++I GE ++VHV R+R YAD+ L + ++VF+ Q EFEMA ++
Sbjct: 2 TWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITAGSKDVFKHAFTQEEFEMAAIV 69
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5L994_9PHAE (Chromo domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L994_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.090e-9 Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 130 GETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTI 363
GE ++VHV R+R YAD+ L + E+ + FQ QG FEMA ++ V + G + V++ WVG + +E WE +S I
Sbjct: 4 GEVRDVHVKRLRFYADAALEITAELNDDFQHAFTQGAFEMAAIVDVSESEDGPG-FDVEVEWVGFDKDENIWEELSKI 80 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8962.16459.1 >prot_H-elongata_contig8962.16459.1 ID=prot_H-elongata_contig8962.16459.1|Name=mRNA_H-elongata_contig8962.16459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHback to top mRNA from alignment at H-elongata_contig8962:5392..5802+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8962.16459.1 ID=mRNA_H-elongata_contig8962.16459.1|Name=mRNA_H-elongata_contig8962.16459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig8962:5392..5802+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8962:5392..5802+ >mRNA_H-elongata_contig8962.16459.1 ID=mRNA_H-elongata_contig8962.16459.1|Name=mRNA_H-elongata_contig8962.16459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig8962:5392..5802+ (Himanthalia elongata Himel1 dioecious)back to top |