mRNA_H-elongata_contig896.16458.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 164 bits (416), Expect = 1.890e-43 Identity = 88/197 (44.67%), Postives = 118/197 (59.90%), Query Frame = 1
Query: 7 LCETGMVYPNPQAVCASVAMDFPKGLGKG--YRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDPEHV 591
L G+VY N QA+ AS M PK G YR V DF VN Q E PGPM D E + ++ + + ++D LQGYW PLA EA+E FT + GLY+P RVPQG++NATSY+QG M +L DL C+++VD++ G + E L+ L +L F LF+AAHK + T VKWC K+YS V+ HD + +
Sbjct: 681 LVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDL---NCIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHDRDRL 874
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 159 bits (402), Expect = 1.440e-41 Identity = 89/195 (45.64%), Postives = 114/195 (58.46%), Query Frame = 1
Query: 7 LCETGMVYPNPQAVCASVAMDFPKGLGKGYRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDPEHV 591
L G+V+ N QAV AS AM PK GYRLV+DF N Q E VPG M +PE + + + ++D LQ YW+CPLA EA+E FT T GLYTP RVPQGI+NATSYFQ + +L G C ++VD+V G + L+ L +L L++AAHK F T + WC K+YS V HDPE +
Sbjct: 783 LAGLGLVFLNMQAVWASAAMATPKK--GGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILD---GLNCFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPERL 972
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A6A3J5U5_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J5U5_9STRA) HSP 1 Score: 138 bits (348), Expect = 2.420e-34 Identity = 76/194 (39.18%), Postives = 111/194 (57.22%), Query Frame = 1
Query: 13 ETGMVYPNPQAVCASVAMDFPK-GLGKGYRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDPEHV 591
E +V+ N Q+ A A+ PK GLG+ +R D+ PVN + + G M + + K G F T D +G+W+ L + +E+F+F+T D +YTPTRVPQG ++ +FQ M EV D++ LI+VD++ V R+VE+ +A L+ + L L A K LFA E+ WC +L GT VRHDPE V
Sbjct: 150 EFKLVFRNNQSRWACAAIPVPKKGLGEEFRCANDYRPVNKRSIAIAGAMPNLLVVIAKVKGAYYFATFDLFKGFWQLMLHPDCQEFFSFITNDTVYTPTRVPQGATDSPIHFQNQMQEVFRDMLYDNVLIWVDDIVVFARTVEEFLAVLKKFFERLRQYGLKLNAKKSCLFAREISWCGRLIDGTGVRHDPERV 343
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A0G4J790_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J790_PLABS) HSP 1 Score: 133 bits (334), Expect = 1.710e-32 Identity = 74/197 (37.56%), Postives = 108/197 (54.82%), Query Frame = 1
Query: 1 ELLCETGMVYPNPQAVCASVAMDFPKGLGKGYRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDPEHV 591
++L E ++Y N + AS + K GKGYRL D VN + PM + E K AG F T+D +G+W P+AKE +E F+F+T DG+YTPTR QG N+ FQ + ++ D+ LI++D++ ++ + L+ L VL ER L K VLFA E+KWC ++YS +RHDPE +
Sbjct: 329 KMLLENNLIYLNMNSRWASPVLVVKKPNGKGYRLCVDLRQVNSRTVPTAWPMPNIEAASRKLAGMTCFFTIDAHKGFWLMPIAKECQEIFSFMTDDGVYTPTRSIQGATNSALQFQARIGKIFDDMKDHL-LIWIDDLLGFAKTEDILLHQLARVLERARERNLKFNPDKCVLFARELKWCGRIYSRDGIRHDPERI 524
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A6A3W457_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3W457_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.050e-31 Identity = 69/190 (36.32%), Postives = 106/190 (55.79%), Query Frame = 1
Query: 22 MVYPNPQAVCASVAMDFPKGLGKGYRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDPEHV 591
+V N Q+ A A+ K +R+ D+ PVN + G ++ + E G+ F D +G+W+ PL +RE F+FVT DG++TPTRVPQG ++ +FQ M +VL DL+ R+ L+++D+V + R+ + + NL + +R+L L A K LFA VKWC K+ G V HDPE +
Sbjct: 205 LVERNTQSRWACPALPVAKRGTDEFRITIDYRPVNRLTVPLAGASLNLAVVTESVRGSYGFGAFDFHKGFWQMPLHPNSREIFSFVTEDGVFTPTRVPQGASDSAVHFQAQMNDVLKDLLFRSVLVWIDDVLLYARTAGEYLENLSAFFAILRQRKLKLNARKCKLFAKRVKWCGKVIDGEGVEHDPERL 394
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A6A3GQ28_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GQ28_9STRA) HSP 1 Score: 127 bits (320), Expect = 4.120e-31 Identity = 67/195 (34.36%), Postives = 106/195 (54.36%), Query Frame = 1
Query: 7 LCETGMVYPNPQAVCASVAMDFPKGLGKGYRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDPEHV 591
L G VY N + A+ K +R D+ P+N E + G M E+ E G + + D L+G+W+ PL K ++EY +++T G++TPTRVPQG +A +FQ + VLGDLV ++ ++++D++ V + E+L+ + + L E L L K LF TEV+WC ++ S V HDPE +
Sbjct: 296 LVSLGWVYENRASRWCCPALPIRKPGTDSFRQTNDYRPLNNVTEPIAGVMPSLEVALEHCKGKMFYAVFDFLKGFWQLPLDKSSQEYMSYMTDKGIFTPTRVPQGSTDAALHFQSTVEMVLGDLVNKSVIVWIDDLLVFADTAEELLEAIEATLTKLDEYGLILNPKKSALFLTEVRWCGRIISKAGVGHDPERI 490
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A2P4YDS0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDS0_9STRA) HSP 1 Score: 129 bits (323), Expect = 5.660e-31 Identity = 66/193 (34.20%), Postives = 109/193 (56.48%), Query Frame = 1
Query: 7 LCETGMVYPNPQAVCASVAMDFPK-GLGKGYRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDP 582
L + G V N ++ A A+ K G +R+ D+ PVN + G M + ++ ++ +G+ F D ++G+W+ PL +++E +F+T D ++TP RVPQG M+++ +FQ + +V +L+GR CLI++D++ + S + I LR E L L +K V+F EV WC +L SG VRHDP
Sbjct: 541 LVDFGFVRRNDKSRWACAAVPVRKVGSADSFRITNDYRPVNKLTVPIAGVMPNLDVVLDQVSGSYGFAKFDLMKGFWQMPLHPDSQELMSFMTEDSVFTPLRVPQGAMDSSVHFQNQLQDVFRELLGRHCLIWIDDIIIYAASATEFIVVLRRFFELVQEHGLKLNVNKSVIFCKEVAWCGRLVSGNAVRHDP 733
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A6A3K6I0_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3K6I0_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.010e-30 Identity = 67/195 (34.36%), Postives = 106/195 (54.36%), Query Frame = 1
Query: 7 LCETGMVYPNPQAVCASVAMDFPKGLGKGYRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDPEHV 591
L G VY N + A+ K +R D+ P+N E + G M E+ E G + + D L+G+W+ PL K ++EY +++T G++TPTRVPQG +A +FQ + VLGDLV ++ ++++D++ V + E+L+ + + L E L L K LF TEV+WC ++ S V HDPE +
Sbjct: 537 LVSLGWVYENRASRWCCPALPIRKPGTDSFRQTNDYRPLNNVTEAIAGVMPSLEVALEHCKGKMFYAVFDFLKGFWQLPLDKSSQEYMSYMTDKGIFTPTRVPQGNTDAALHFQSTVEMVLGDLVNKSVIVWIDDLLVFADTAEELLEAIEATLTKLDEYGLILNPKKSALFLTEVRWCGRIISKAGVGHDPERI 731
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A225VK89_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VK89_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.050e-30 Identity = 68/195 (34.87%), Postives = 107/195 (54.87%), Query Frame = 1
Query: 7 LCETGMVYPNPQAVCASVAMDFPKGLGKGYRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDPEHV 591
L E G VY N Q+ A+ K +R D+ PVN E + G M ++ E G + + D L+G+W+ PL + REY +++T G++TPTRVPQG +A +FQ + VLGDLV + ++++D++ V S +L+ +++VL E L L K LF TEV+WC ++ + + HDPE +
Sbjct: 595 LVELGWVYENHQSRWCCPALPVRKASTSEFRQTTDYRPVNALTEPIAGVMPRLDVALEVCRGKMFYALFDFLKGFWQLPLDESCREYLSYMTDKGIFTPTRVPQGSTDAALHFQATVEMVLGDLVNKNVIVWIDDLLVFADSAHELLDVIKAVLTKLDEFGLLLNPKKSSLFLTEVRWCGRIINRQGIGHDPERI 789
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Match: A0A6A4C6S8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4C6S8_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.390e-30 Identity = 69/191 (36.13%), Postives = 105/191 (54.97%), Query Frame = 1
Query: 19 GMVYPNPQAVCASVAMDFPKGLGKGYRLVADFPPVNGQCELVPGPMIDPEIEGEKYAGTVAFCTMDCLQGYWRCPLAKEAREYFTFVTRDGLYTPTRVPQGIMNATSYFQGMMMEVLGDLVGRACLIYVDNVKVIGRSVEKLIANLRSVLLWFMERELFLAAHKLVLFATEVKWCSKLYSGTVVRHDPEHV 591
G+V N Q+ A A+ K R+ D+ PVN + G ++ + E G+ F D +G+W+ PL +RE F+FVT DG++TPTRVPQG ++ +FQ M +VL DL+ R+ +++D+V + R+ + + NL + +R+L L A K LFA VKWC K+ G V HDPE +
Sbjct: 206 GLVERNTQSRWACPALPVAKRGTDECRITIDYRPVNRLTVPLAGASLNLAVVTESVRGSYGFGAFDFHKGFWQMPLHPNSREIFSFVTEDGVFTPTRVPQGASDSAVHFQAQMNDVLKDLLFRSVFVWIDDVLLYARTAGEYLENLSAFFAILRQRKLKLNARKCKLFAKRVKWCGKVIDGEGVEHDPERL 396 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig896.16458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig896.16458.1 >prot_H-elongata_contig896.16458.1 ID=prot_H-elongata_contig896.16458.1|Name=mRNA_H-elongata_contig896.16458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp MVYPNPQAVCASVAMDFPKGLGKGYRLVADFPPVNGQCELVPGPMIDPEIback to top mRNA from alignment at H-elongata_contig896:1335..1925+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig896.16458.1 ID=mRNA_H-elongata_contig896.16458.1|Name=mRNA_H-elongata_contig896.16458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at H-elongata_contig896:1335..1925+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig896:1335..1925+ >mRNA_H-elongata_contig896.16458.1 ID=mRNA_H-elongata_contig896.16458.1|Name=mRNA_H-elongata_contig896.16458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig896:1335..1925+ (Himanthalia elongata Himel1 dioecious)back to top |