mRNA_H-elongata_contig8956.16455.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8956.16455.1 vs. uniprot
Match: D7G491_ECTSI (Similar to Dynein heavy chain 3, axonemal (Axonemal beta dynein heavy chain 3) (Ciliary dynein heavy chain 3), partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G491_ECTSI) HSP 1 Score: 504 bits (1299), Expect = 6.580e-151 Identity = 446/1248 (35.74%), Postives = 586/1248 (46.96%), Query Frame = 1
Query: 1 IIEECGKSLIQPSAVSTPMDFLTSESEYRRVWQVFKVWLFSAVAAKLQARLPKFFTMSYRVFNMGICIPTLELDARFLERYDIIQEQSISSKTPASPTAPQQVKFSRDALAKGTCLPPDRAEYALEAMLCAMGRHAGIGSTLLVDFGVGVLAARRQVMKFTFVQGVDSLKVTPEPPASHTVMKKAVVARGGIHTFGKCYIPYVCRENKEIAIARSRETSSLIRSINNLGVDSDSPPEGVEGEESM-VDQDAVRTMRTWNP------SIGSTPTPVAPLRAAKPPRPDRSTNDRD----KSATNDTRSTC---------------RLWARLSGLRDRG-VKAWITATVNASLPTSSSSAIPPLPSLIDIHTRLRGSILA--PSELGLGMKAL-CPALNSPLG---------------------------------FEPTGVERVGNHFSPAAQELWLDPSRGGIAWRNGERSLGNWGNHMGGDNSSEIPEGVIVDAKAFSRQTEASREERRVASDFPDTS--KVFVGL------------PEDSNDTAMMGDAQSQKKHELREVESMH-EPYVEERKTLLGG----------------TKKRP-------RGDRRES-------------------IAFETMPKLGGVPPIG--LPQSSP--------EFPREACTVDDRRTSAVARPP--SSP-----RLVPGVGGK---RPNFMSKRWLRSKYPCAS---GELQALRSLYFPQQESFLEVT----LASDGRVDEHRGCDIEAQGGNGTASKHDDLVEEGFRRYHHYLNVDAALADSVAVLQVTRQAGIVVKVLDRLLDRVSDSAACAETFD-DDDGSLEDCSKXXXXXXXXXXRETGRRRAPANNGKYSPGTRYKSRRKSSSAGGDKLASENDHNAIIEGGESGEEKGEEDKDENEGSDKFETC---------TSLTSFGILAERCLSQGLKNETDTNAGEGEENGAVRGNGL----TDRAPAALIVKVMRDTSPTDHTEEKHRLTLGG----ERFQMPEALEEGMKRSLDEASEAFRRSIRRAVLNYVLLDARQRKRLGIPAIPPGFSSEGWGWGKGRGFQESPPEWRRRVSRARQALIRGQITGSPALVAAQALLVECREIRLLKLPISTEAIWSSRWSPMIAENFRSAQLKDISKSVERVRRLLYPGLADALMSRLGDHSG--------LAPRH-----DSYVRRYLLAVNVMAASVLRSIVEVALADLLAFFQ 3210
I+ +CG+SLI+PSAVS PMDFLTSE+EYRRVWQVFK WL SAV+AKL+A +P+FF++SYRVFN+GICIPTLE D FL RY I QEQS+SSK+ SP AP+QV+FSR+AL KG LP RA YALE +LCA+G+ AG+G+TLLVD GVGVLAAR +V KFTFVQ +A+AR+RET+SL+RS+ + D PP+GVEGEE M D V MR WNP S S T V+ A D ++ K+AT + T R+ L G RDRG I +A+ L+D+H RLRGS+L+ PS + + A P+ +SP G EPTGVER+G+++SPAAQ L+LD +RG +AWR + G + + GG N+ + G+ A + A R+ R + D++ +V+VG+ P N T + G S+K + + H E R GG RP R D +E + +P G +G +P+SSP P A V V PP SSP + P V K RP+ + + + PC G ++ R+ + Q S AS G V + ++E G + GF RYHHYL D+ LA+SV VLQ QAGIV KV+ L R + G + +T + ++NG G R + S G + N + + G G D FE T+ LA TN+G G G V G + D P A +T+ + G ++P+ + G++ L+E EAFR SIRRAVLNYV+LDA QR RLGI A+PPGF+S+GWGWGKGRG Q+SPPEW+RR RAR+AL GQITGSPALVAAQALL +CR RLL+LP S I +S WS M AE FRS+QL +S+ RVRRLLYPGL++AL ++LG S LA R D +VRRYL AVNVM AS+LR +VE A++DL F +
Sbjct: 2 IMHKCGRSLIEPSAVSAPMDFLTSEAEYRRVWQVFKHWLCSAVSAKLRACVPRFFSLSYRVFNLGICIPTLEFDESFLNRYGISQEQSLSSKSSLSPRAPKQVEFSREALGKGAGLPSARASYALEGLLCAVGKEAGLGATLLVDCGVGVLAARGRVTKFTFVQ---------------------------------------------LALARARETTSLLRSLREVQADRFLPPDGVEGEEGMPTDNGVVAAMRAWNPGRSSASSASSAGTGVSGSLAFSGDGNDGDIRTKNGLLGKNATGAAKITAGEIAGSTVRARIGLGRMTLPLRGFRDRGRTPVGIATGESAAXXXXXXXXXXXXXXLMDVHARLRGSVLSASPSPMARLLDATTAPSPSSPNGDRGIANSVLPERKQSRAAAVEPGTRPTGHLSLWLEPTGVERLGSYYSPAAQLLYLDVNRGCLAWRE-NANTGGFTCNEGGSNTRGVGGGLGSRILAPATPKLARRDAARGQTSPTDSANPQVYVGMVANVTRVASQGGPNGVNATVVTGTGSSEKDGHKLGLRTPHMESECHNRPAYAGGGXXXXXPGVPSSSEARQMSRPHDSSHSSRNDGQEGRSETWMSSSPPDATPAKAGVQSPELPSDGNNNTVGPLVPESSPGRERTSDRNCPPRAGQVGALAGCEVTYPPRSSSPPVKRNQTPPAVLSKIRRRPDDETGQRDDDRLPCPGEGRGSMEGERAELWMGQRSGGNGDRGGWAASAGAV-QAANPELEVSDAAGRR-------QAGFARYHHYLQCDSTLAESVTVLQPPWQAGIVRKVVHGLSGRGGGXXXXXXXXXCNTSGRHSGTPRGWDLEKSNDEEDTS---SESDNGGV--GVRGIGGGRYSRPGCKDVGGTGTENIPAKDAQEG---GXXXXXXXXXXDVFEVHVEGPAPVAKTAQHKVPYLAVTSGGDQPPQSPTTNSGGGR--GVVGGGSVFTSRVDGTPRATAFNRAANTAKRPRARTPRGVAGPGPGEARMPEVPDGWKAGVEACLEETCEAFRASIRRAVLNYVVLDAGQRDRLGISAVPPGFASQGWGWGKGRGIQKSPPEWQRRFVRAREALNMGQITGSPALVAAQALLAKCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRVRRLLYPGLSEALKAQLGVGSKGTRATTAELATRTKSSPPDGHVRRYLAAVNVMTASILRGMVETAISDLQIFLE 1185
BLAST of mRNA_H-elongata_contig8956.16455.1 vs. uniprot
Match: A0A6H5L524_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L524_9PHAE) HSP 1 Score: 472 bits (1215), Expect = 7.750e-139 Identity = 449/1277 (35.16%), Postives = 575/1277 (45.03%), Query Frame = 1
Query: 1 IIEECGKSLIQPSAVSTPMDFLTSESEYRRVWQVFKVWLFSAVAAKLQARLPKFFTMSYRVFNMGICIPTLELDARFLER------YDIIQEQSIS-----------SKTPASPTAPQQ---VKFSRDALAKGTCLPPDRAEYALEAMLCAMGRHAGIGSTLLVDFGVGVLAARRQVMKFTFVQGVDSLKVTPEPPASHTVMKKAVVARGGIHTFGKCYIPYVCRENKEIAIARSRETSSLIRSINNLGVDSDSPPEGVEGEESM-VDQDAVRTMRTWNPSIGSTPTPVAPLRAAKPPRPDRSTND-RDKS------ATNDTRSTC---------------RLWARLSGLRDRGVKAWITATVNASLPTSSSSAIPPLPSLIDIHTRLRGSILA--PSELGLGMKAL-CPALNSPLG---------------------------------FEPTGVERVGNHFSPAAQELWLDPSRGGIAWRNGERSLGNWGNHMGGDNSSEIPEGVIVDAKAFSRQTEASREERRVASDFPDTSKV--FVGL------------PEDSNDTAMMGDAQSQKK-HELREVESMHEPYVEERKTLLGG----------------TKKRP-------RGD----RRESIAFETMPKL----GGVPPIGLPQ---------------------SSPEFPREACTVDDRRTSAVARPPSSPRLVPGVGGKRPNFMSKRWLR----------SKYPCAS---GELQALRSLYFPQQESF--------------------LEVTLASDGRVDEHRGCDIEAQGGNGTASKHDDLVEEGFRRYHHYLNVDAALADSVAVLQVTRQAGIVVKVLDRLLDRVSDSAACAETFDDDDGSLEDCSKXXXXXXXXXXRETGRRRAPANNGKYS-PGTRYKSRRKSSSAGGDKLASENDHNAIIEGGESGEEKGEEDKDENEGSDKFETCT------SLTSFGILAERCLSQGLKNE-----TDTNAGEGEENGAVRGNGLTDRAPAALIVKVMRDTSPTDHTEEKHRLTLGGERFQMPE---ALEEGMKRSLDEASEAFRRSIRRAVLNYVLLDARQRKRLGIPAIPPGFSSEGWGWGKGRGFQESPPEWRRRVSRARQALIRGQITGSPALVAAQALLVECREIRLLKLPISTEAIWSSRWSPMIAENFRSAQLKDISKSVERVRRLLYPGLADALMSRLGDHSG--------LAPRH-----DSYVRRYLLAVNVMAASVLRSIVEVALADLLAFFQ 3210
II +CG+SLI+PSAVS PMDFLTSE+EYRRVWQVFK WL SAV+AKL+A +P+FF++SYRVFN+GICIPT+E D FL R + I +EQ S AS T+ ++ V+FSR+AL KG LPP RA YALE +LCA+G+ AG+G TLLVD GVGVLAAR +V KFTFVQ +A AR+RET+SL+RS+ + D PP+GVEGEE M D V MR WNP S + + + D + D R KS AT + T R+ L G RDRG AT +++ L+D+H RLRGS+L+ PS + + A P+ +SP G EPTGVER+G+++SPAAQ L+LD SRG +AWR + G N G DN + G+ + A R+ R S + D++ + G+ P N + S+K HEL E R GG RP R D R E++ + P GV P LP S P A VA PP SP P +SK LR + PC G ++ R + Q S LEV+ A+ R C G LV RYHHY+ D LA+SV VLQ QAGIV KV+ L R + G S+ +T A G + G RY S GG + N + + G E EG D FE + T+ + ++ G + T+++ G G GA + +RA A K +R +P + + G +MPE + G++ L+E E+FR SIRRAVLNYVLLDA QR RLGIPA+PPGF+SEGWGWGKGRG +SPPEWRRR RAR+AL GQITGSPALVAAQALL CR RLL+LP S I +S WS M AE FRS+QL +S+ RVRRLLYPGL++AL ++LG S LA R D +VRRYL AVNVM AS+LR +VE A++DL AFF+
Sbjct: 2 IIYKCGRSLIEPSAVSAPMDFLTSEAEYRRVWQVFKNWLCSAVSAKLRACVPRFFSLSYRVFNLGICIPTMEFDESFLNRWAFDAHFSINREQESDELGGCLAFPTRSMVTASLTSEREETRVEFSREALGKGAGLPPARASYALEGLLCAVGKEAGLGKTLLVDCGVGVLAARGRVTKFTFVQ---------------------------------------------LAQARARETTSLLRSLREVQADRCLPPDGVEGEEGMPTDNGVVAAMRAWNPGASSASSAGTGVSGSLALLGDGNDGDVRSKSGLLGKDATGAAKITAGEITGSTVRARIGLGRITLPLRGFRDRGRTPVGMATGDSAAXXXXXXXXXXXXXLMDVHARLRGSVLSASPSPMARLLAATTAPSPSSPYGDRGIANSILPERKRSRAAAVEPGTRPTGHRALWLEPTGVERLGSYYSPAAQLLYLDVSRGCLAWRESANTGGFTCNDGGSDNGG-VGGGLGSRILLPATPKLARRDAARGKSSYTDSANAQGYDGIVSSITRAASQAGPNGVNAKVVTRTGSSEKDGHELGLRTPHKESECHNRPAYAGGGDGGCGPGVPSSSKACDMSRPHDSSHDSRNDGHEGRSETLMSSSPPDAIAAGAGVQPPELPSEGNNNTVGPLVTESLPGREKASDRSCPPRAGQEGALAGCEVAHPPRSPSPPVKRRQSPPAVLSKIRLRLDNGTDQRDDDRLPCPGEGCGSMEGERVELWMGQRSDGNGDGGGWAVAGAVHAANPGLEVSDATGRRQAGFARC-------RGVIGSSVCLV---CVRYHHYIQCDPTLAESVTVLQPPWQAGIVRKVIHGLSGR--GXXXXXXXXXNTSGCHTGTSRGRDVEKSNDEEDTSSESDNAGAGVWGIGGGRY------SRPGGKGVEGTGTENVPTKDAQDGGEXXXXXXXXXEG-DLFEVHVEGPSPLAKTAQHKVPPLAVTSGRDHPPQSPTTNSSGGRGVGGGASVFSSRVNRA--ADTAKRLRARTP------RGVVGPGPGEVRMPELPGGWKAGVEARLEETCESFRSSIRRAVLNYVLLDAGQRDRLGIPAVPPGFASEGWGWGKGRGIHKSPPEWRRRYVRAREALNMGQITGSPALVAAQALLATCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRVRRLLYPGLSEALKAQLGVGSNGTRATSAELATRAKPSPPDGHVRRYLAAVNVMTASILRGMVETAISDLQAFFR 1205 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8956.16455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8956.16455.1 >prot_H-elongata_contig8956.16455.1 ID=prot_H-elongata_contig8956.16455.1|Name=mRNA_H-elongata_contig8956.16455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1084bp IIEECGKSLIQPSAVSTPMDFLTSESEYRRVWQVFKVWLFSAVAAKLQARback to top mRNA from alignment at H-elongata_contig8956:2609..8661+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8956.16455.1 ID=mRNA_H-elongata_contig8956.16455.1|Name=mRNA_H-elongata_contig8956.16455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6053bp|location=Sequence derived from alignment at H-elongata_contig8956:2609..8661+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8956:2609..8661+ >mRNA_H-elongata_contig8956.16455.1 ID=mRNA_H-elongata_contig8956.16455.1|Name=mRNA_H-elongata_contig8956.16455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6504bp|location=Sequence derived from alignment at H-elongata_contig8956:2609..8661+ (Himanthalia elongata Himel1 dioecious)back to top |