mRNA_H-elongata_contig89542.16454.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89542.16454.1
Unique NamemRNA_H-elongata_contig89542.16454.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89542.16454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89542contigH-elongata_contig89542:1333..1940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size560
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89542.16454.1prot_H-elongata_contig89542.16454.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89542 1370..1708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931295.7376652-UTR-H-elongata_contig89542:1332..13691622931295.7376652-UTR-H-elongata_contig89542:1332..1369Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89542 1333..1369 +
1691679777.8965352-UTR-H-elongata_contig89542:1332..13691691679777.8965352-UTR-H-elongata_contig89542:1332..1369Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89542 1333..1369 +
1622931295.7838254-UTR-H-elongata_contig89542:1708..19401622931295.7838254-UTR-H-elongata_contig89542:1708..1940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89542 1709..1940 +
1691679777.9279437-UTR-H-elongata_contig89542:1708..19401691679777.9279437-UTR-H-elongata_contig89542:1708..1940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89542 1709..1940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931295.7570324-CDS-H-elongata_contig89542:1369..16391622931295.7570324-CDS-H-elongata_contig89542:1369..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89542 1370..1639 +
1691679777.9044204-CDS-H-elongata_contig89542:1369..16391691679777.9044204-CDS-H-elongata_contig89542:1369..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89542 1370..1639 +
1622931295.7697372-CDS-H-elongata_contig89542:1687..17081622931295.7697372-CDS-H-elongata_contig89542:1687..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89542 1688..1708 +
1691679777.9171925-CDS-H-elongata_contig89542:1687..17081691679777.9171925-CDS-H-elongata_contig89542:1687..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89542 1688..1708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89542.16454.1

>prot_H-elongata_contig89542.16454.1 ID=prot_H-elongata_contig89542.16454.1|Name=mRNA_H-elongata_contig89542.16454.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MRRRKGSYILYQFHKAEGGRAIRYNTGGTCVVINAIGLPPACGQKKTFSC
PYSCLRIWSCEADSAVPSLVSPLLLPTQTESGAYSRGPLNKWKRGS*
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mRNA from alignment at H-elongata_contig89542:1333..1940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89542.16454.1 ID=mRNA_H-elongata_contig89542.16454.1|Name=mRNA_H-elongata_contig89542.16454.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=608bp|location=Sequence derived from alignment at H-elongata_contig89542:1333..1940+ (Himanthalia elongata Himel1 dioecious)
GTGTCGGGGGGAGGGAAGTACGAGGGTATCCCGCGTGATGCGCAGGAGAA
AGGGCTCATATATACTCTATCAGTTTCACAAAGCTGAAGGTGGGCGCGCA
ATAAGATATAACACCGGAGGGACATGTGTGGTCATCAACGCGATAGGGTT
GCCTCCTGCTTGTGGTCAGAAAAAAACTTTTTCCTGTCCCTATTCGTGTC
TGAGAATTTGGTCTTGCGAAGCGGATTCGGCCGTCCCGTCACTCGTCAGC
CCGCTCCTTCTCCCAACCCAGACTGAATCTGGTGCGTACTCCCGGGGTCC
TCTAAACCCTCTCGTTTTCCGTGACGGTCTACCGTCAGAGAACCGAAAGA
GAGAAAAATGGAAAAGAGGTTCATGACAGTTCGGGGTTGAATTTGTAGGG
CATTGAGTGGGCGGGAGAGGAGGGTTAAAGCGTGATCGCCCCTTAGCTCT
CCTCGAAAATCTCCGCACCGCCGATGACCCGACAAGTTAGAGCCTGGAGT
CTCGCGTGTTTCTCTTCTCTTCCTCCCCTCTTGTCTTTCCTTTCCCCTTC
CCGCCCGCACTGCCCAATGTTCCCCCAATCCTCCCCTTTCCCCGAGTGCG
TGTTCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig89542:1333..1940+

>mRNA_H-elongata_contig89542.16454.1 ID=mRNA_H-elongata_contig89542.16454.1|Name=mRNA_H-elongata_contig89542.16454.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig89542:1333..1940+ (Himanthalia elongata Himel1 dioecious)
ATGCGCAGGAGAAAGGGCTCATATATACTCTATCAGTTTCACAAAGCTGA
AGGTGGGCGCGCAATAAGATATAACACCGGAGGGACATGTGTGGTCATCA
ACGCGATAGGGTTGCCTCCTGCTTGTGGTCAGAAAAAAACTTTTTCCTGT
CCCTATTCGTGTCTGAGAATTTGGTCTTGCGAAGCGGATTCGGCCGTCCC
GTCACTCGTCAGCCCGCTCCTTCTCCCAACCCAGACTGAATCTGGTGCGT
ACTCCCGGGGTCCTCTAAACATGCGCAGGAGAAAGGGCTCATATATACTC
TATCAGTTTCACAAAGCTGAAGGTGGGCGCGCAATAAGATATAACACCGG
AGGGACATGTGTGGTCATCAACGCGATAGGGTTGCCTCCTGCTTGTGGTC
AGAAAAAAACTTTTTCCTGTCCCTATTCGTGTCTGAGAATTTGGTCTTGC
GAAGCGGATTCGGCCGTCCCGTCACTCGTCAGCCCGCTCCTTCTCCCAAC
CCAGACTGAATCTGGTGCGTACTCCCGGGGTCCTCTAAACAAATGGAAAA
GAGGTTCATGAAAATGGAAAAGAGGTTCATGA
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