mRNA_H-elongata_contig8949.16448.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8949.16448.1
Unique NamemRNA_H-elongata_contig8949.16448.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8949.16448.1 vs. uniprot
Match: D8LIE1_ECTSI (Rhodanese Homology Domain superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE1_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 1.680e-45
Identity = 108/207 (52.17%), Postives = 134/207 (64.73%), Query Frame = 3 
Query:  336 GILGRASLRQLVASLGAGGEVVAVEASPRDARAAQGLSLVSGARGCRMYVLTCDEASVLKHLDQ------------RGGRRSLSEEPDFKT--MTLNNFPEGLFDVIVLGGGGGTADAGPDSIYEAEEIETLSLTPAERLDLVLDRRLIKRTGLVLCDPSALVGGQEAVRSLVARAVESKGTVEHARVPGAGPNGGLHVFKWKTYSH 914
            G  GRA LR+L  +LG GGE+  VEAS   A AA+GLSLV+  RGC + VL CDE  +L+ + +                 ++ ++ D +       +   GLFDVI+LGGG G   AG   + E +       TP+ERLDLV+DRRL+KRTGLVLCDP AL GG+ A RS+VARA E KG+VEHARVPGAGP+GGLHVFKWKTYSH
Sbjct:  674 GAAGRAGLRRLAEALGEGGELFVVEASYEAASAARGLSLVAQGRGCSVTVLVCDEGEMLQSVTKVVAGADSPKASTEAAAAAVGKDGDVRPDGAAHRSARGGLFDVILLGGGDGVEGAGSVPVREEDR------TPSERLDLVMDRRLMKRTGLVLCDPQALGGGRAAARSMVARAAEVKGSVEHARVPGAGPSGGLHVFKWKTYSH 874
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BLAST of mRNA_H-elongata_contig8949.16448.1 vs. uniprot
Match: A0A6H5L4H6_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.180e-31
Identity = 91/193 (47.15%), Postives = 109/193 (56.48%), Query Frame = 3 
Query:  345 GRASLRQLVASLGAGGEVVAVEASPRDARAAQGLSLVSGARGCRMYVLTCDEASVLKHLDQRGGRRSLSEEPDFKTMTLNNFPEGLFDVIVLGGGGGTADAGPDSIYEAEEIETLSLTPAERLDLVLD---RRLIKRTGLVLCDPSALVGGQEAVRSLVARAVESKGTVEHARVPGAGPNGGLHVFKWKTYSH 914
            GRA LR+L  +LG GGE+ AVEAS   A AA+GLSLV+ ARGC + VL CDE  +L+ +     R  ++E    K                               +  E       T  +  D  L     RL+KRTGLVLCDP AL GG+ A RS+VARA E KG+VEHARVPGAGP+GGLHVFKWKTYSH
Sbjct:  721 GRAGLRRLAEALGEGGELFAVEASSEAATAARGLSLVAQARGCSVTVLVCDEGEMLESI-----RTVVAEADSAKXXXXXXXXXXXXXXXXX-------------XFRLER-----RTARQPKDWTLSWTGERLMKRTGLVLCDPQALGGGRAAARSMVARAAEVKGSVEHARVPGAGPSGGLHVFKWKTYSH 890
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8949.16448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIE1_ECTSI1.680e-4552.17Rhodanese Homology Domain superfamily n=1 Tax=Ecto... [more]
A0A6H5L4H6_9PHAE5.180e-3147.15Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8949contigH-elongata_contig8949:6189..9612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.4e-32
Seed eggNOG ortholog2880.D8LIE1
EggNOG free text desc.Rhodanase C-terminal
EggNOG OGs2QPZW@2759,COG1054@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size2972
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8949.16448.1prot_H-elongata_contig8949.16448.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8949 6800..7557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931295.02649-UTR-H-elongata_contig8949:6188..66631622931295.02649-UTR-H-elongata_contig8949:6188..6663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8949 6189..6663 +
1691679777.580245-UTR-H-elongata_contig8949:6188..66631691679777.580245-UTR-H-elongata_contig8949:6188..6663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8949 6189..6663 +
1622931295.0499995-UTR-H-elongata_contig8949:6798..67991622931295.0499995-UTR-H-elongata_contig8949:6798..6799Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8949 6799..6799 +
1691679777.5930598-UTR-H-elongata_contig8949:6798..67991691679777.5930598-UTR-H-elongata_contig8949:6798..6799Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8949 6799..6799 +
1622931295.0947983-UTR-H-elongata_contig8949:7557..96121622931295.0947983-UTR-H-elongata_contig8949:7557..9612Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8949 7558..9612 +
1691679777.634432-UTR-H-elongata_contig8949:7557..96121691679777.634432-UTR-H-elongata_contig8949:7557..9612Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8949 7558..9612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931295.0660987-CDS-H-elongata_contig8949:6799..70531622931295.0660987-CDS-H-elongata_contig8949:6799..7053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8949 6800..7053 +
1691679777.6070578-CDS-H-elongata_contig8949:6799..70531691679777.6070578-CDS-H-elongata_contig8949:6799..7053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8949 6800..7053 +
1622931295.0810995-CDS-H-elongata_contig8949:7370..75571622931295.0810995-CDS-H-elongata_contig8949:7370..7557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8949 7371..7557 +
1691679777.6218307-CDS-H-elongata_contig8949:7370..75571691679777.6218307-CDS-H-elongata_contig8949:7370..7557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8949 7371..7557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8949.16448.1

>prot_H-elongata_contig8949.16448.1 ID=prot_H-elongata_contig8949.16448.1|Name=mRNA_H-elongata_contig8949.16448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MYVLTCDEASVLKHLDQRGGRRSLSEEPDFKTMTLNNFPEGLFDVIVLGG
GGGTADAGPDSIYEAEEIETLSLTPAERLDLVLDRRLIKRTGLVLCDPSA
LVGGQEAVRSLVARAVESKGTVEHARVPGAGPNGGLHVFKWKTYSH*
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mRNA from alignment at H-elongata_contig8949:6189..9612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8949.16448.1 ID=mRNA_H-elongata_contig8949.16448.1|Name=mRNA_H-elongata_contig8949.16448.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3424bp|location=Sequence derived from alignment at H-elongata_contig8949:6189..9612+ (Himanthalia elongata Himel1 dioecious)
AAGCGGGGTATTTGACCCTCCCCTTCCTCCACCCCTATCGTTGAATTATA
TGTGTGATTTTGGTTTACTACAGTAGGAGAGTGTACGGATACGTTCGCAT
TTGTCCGCGTACCACTCCTGGCTCTCTCCTCCACGCTGTTTTGATGGTAC
GTGGATAGGGGTGCATCGCTCGCGAGCAATCCACGGATGAAACAGACGAC
GTTGAGCCCTCGAGCTAGGCAAAGAGGCGGTATCGTGCCCGGAACTCTTA
TCGATTCCAAGGGAAGGGCCGACAAGTTGACGGATCTCAACCGTATCGTT
CCCCACGTTTGGCCGATCCCTTCTCGGCCGAATCGGGCATTCTAGGTCGC
GCAAGCTTGCGGCAACTGGTTGCGTCACTAGGGGCCGGTGGGGAGGTCGT
AGCGGTGGAGGCGTCTCCCCGAGACGCTAGGGCGGCGCAGGGCTTGTCTC
TTGTTTCCGGGGCGCGAGGATGCAGGTGAGAGGTGCTGGTGATCGCGTCT
GATCCGAGGAAACCAAGCATATGGAATATATTTTAGTGACAAGAATACTT
GAGTGCGTCGCTTGATCCACGTTGGACTGGGCTGGGCTCGTCGTACCTTT
GGCGTAACAGGATGTATGTCCTAACTTGTGATGAAGCATCAGTCCTGAAG
CATCTGGACCAGAGGGGAGGACGAAGGAGCCTCTCGGAGGAGCCGGACTT
TAAGACGATGACGTTAAATAATTTCCCGGAAGGCCTGTTCGACGTCATCG
TGCTTGGCGGAGGAGGCGGTACGGCAGACGCAGGCCCGGATTCGATCTAT
GAAGCTGAAGAAATAGAAACGCTAAGTCTTACGCCTGCTGAGCGGCTGGA
TCTCGTCCTTGACAGGTGGGCTGTACGTCTGCCGTCCGTTCTTTGGCATC
GCGCGTCTCAGAATCGGGCGCGGAAGATCGTGGTGCACCGTCTTGTAGGC
GTTGACGCGGCAGACCGCAGCAACCATTTCTCGACGATCTGAATTTTGGG
GGCGGTAAGTCTTCCTTGCTGAGGCCGCTTGGTGTCTGCAAGCCAAAACA
TACTTCCCAACCCGCTCATCTGTAGCGCCAGTCGCGGTTGCCTGCCTACC
ATGGTGCGTTGCGCTCGAGCGCACGCCTTCGATCCCTGCCGATCCTTATT
CCCTCTGCCGTTGACCCCGTGTCCGCTCCTAGACGACTTATCAAGAGGAC
GGGGCTTGTGTTGTGCGATCCAAGCGCCCTGGTAGGGGGTCAAGAAGCCG
TGCGATCGCTCGTGGCGCGAGCGGTAGAATCGAAGGGTACCGTGGAGCAT
GCCCGGGTGCCGGGCGCTGGTCCAAACGGGGGTTTGCATGTGTTCAAATG
GAAGACGTACTCCCACTGATGACCAAGAGGATCGAGACACGCGGCGTATC
CGTGCCGTCATTTACCGGGTGTTCTGGTGACGTGTGAAGACTGGATGTCG
CGGAGAACGTCCATATACCGCGCAGTATCACCTAGGCCCACGGATTCGCG
TTGCGTGAGGGGTGCTGAGATTTTATGCGCGGTGTACGCGCGTCGGCATC
GGTATCGTCTAATGTTAGGGCCACGGGAGGGGCACGCAGCACGTGATCTC
CCTACCACTAACTGATTGCGAATGTTATCGTGGTCGTGCGATCACTAACG
CGTTCTCCTTTTGAGGCACCCACAAAGAAGGTGCTCACGCGACTTTCAAT
TATGTGCCATTTACCATGGTTTTACCAAACCTTACACACCCTCGTGACCC
AGGTTCACACTATTAGAGCATATATATCGAGAGAACATAAAATGCAGAGA
GCAGAGAGGTCGCGCGCGGAGACAAAAACTTCGCCAAGAGCCGCGGCTGT
TGAATTCTCGGGGGCATACTCTCGTCGCGAAGTTTGCCGCGTTGAAGTGG
GGGGCGATGTTCTCTGTTTCCGGTGAAAAGAGCGAGCGATGACTATAACA
AGATGTAAGTCAGAAGCGCGCTCCCTCATCGGGTAAAGGCAAGCTTCAAA
CAGCAATCGTCAATTCGACTTCCGGCTGCTTCGAGGGAAGATCTTTTTTG
GATATCGCAGCCTCAGGGTTTGTACCTAGTGTATATGATTTAATGTTGAA
TGAAGCGGTTGAGGAAAACAGCCCCCCAAAGAGATTCCTAAGTAAATAGG
GTGGAAAGTATCGGATAGTCTCGATCTCCAAAGACCGGAAACGATCAAGC
ACTTCTGTGGTGAAGCATGAAACGCGAGTGACTTGTGTGCATGGTTTTGC
TCGCAAGCGAGCGGCGGTGATCGAAAGCTTTTAACAATCAATATGGAGCG
GGATTCGATGCGTAGGGCGTACGGAGAAAGCTCATTTGGGCGGGTCCGTT
ACACAGACACACACACGCGATTTTTATTATTACGAGTTTGGAGGGGGGCA
TATCACATTGTTTTTTAGCAGGATCAAAGGGGTAAAATAAAAGCGAAGAG
TGATTACGTCTGAAGAAATGACAGGATCGTGAAGGGGACAGGGGAGACGA
AGCGCTTTTCCCAGACTTGGACGCCCATTGCCTTTTGGCTAAAGCTGCAA
ACTCTCGCCTATCCGCACCTTATCGGTTAGATGGGGGGTTTATCTCAAGT
GCATTACCGGTGCCTAGGCGAGAAGGGGCCAAGATCGATGGTAGATATAA
ACTCAACCCACTCCAGCCGGATTGCCATAATTACCCGCTTCGTCGTCGTA
CGACATGGCGATCTCGGTGGAAAACTTCCTGTCCTCGCACTCGGACGCCG
CCAGGTCAACGGACACATAATATATACACGGGGTGGGAAGTTGGCACATC
ACGACCACAAATGTGTTGAAGTGTGATTGGATTGAGATAATTTTTGCTGA
TAACATTTTATAGTTTAGGAATGTAACTAATTTTCGGCTAGTGGCTTGAG
AGGGCGCGCATAGCCGGTTGTCGCGGAGGGGGTTTCCGTACTTGAGTGTA
GTATCTGAAAAGGATTAACCGGTGTTGGGACGTTCTACGATGATAGTCCC
CCCCAATAACGTTTATGACGAAAGCTGCAAACCATTAAACATGGCTCTGT
CCGATGTTGTAGCGATCATTGCTTAAAATTGTATGTTATCAAAATATGGT
TTTGTATGTTGACATTATGGACATTTGTTGAATTTGCTTCTGCGACCGGC
ATGTTTGACCAAAAACAACCCGACGATAGTTGGTCCCCTGGATAGCTCCT
CTCACGGTGCTAATACGGTGTGGATGTTCGGAGGGTTCAAATGAGTTTAA
GGTTTTTCTAATAAAAATATAAAACGCCTGGTGCGACCCCACGAGGACTG
CCCTTGCGATCCATAGTGATGGACACCCAAGACCCGAGAACTGTATTTAC
GTTCTCAACCTTGGAAGGCATACTGGTTGATTGTGGTCTATGACCCCCTA
ACGGCCGCTCTATGGATGGATGTT
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Coding sequence (CDS) from alignment at H-elongata_contig8949:6189..9612+

>mRNA_H-elongata_contig8949.16448.1 ID=mRNA_H-elongata_contig8949.16448.1|Name=mRNA_H-elongata_contig8949.16448.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig8949:6189..9612+ (Himanthalia elongata Himel1 dioecious)
ATGTATGTCCTAACTTGTGATGAAGCATCAGTCCTGAAGCATCTGGACCA
GAGGGGAGGACGAAGGAGCCTCTCGGAGGAGCCGGACTTTAAGACGATGA
CGTTAAATAATTTCCCGGAAGGCCTGTTCGACGTCATCGTGCTTGGCGGA
GGAGGCGGTACGGCAGACGCAGGCCCGGATTCGATCTATGAAGCTGAAGA
AATAGAAACGCTAAGTCTTACGCCTGCTGAGCGGCTGGATCTCGTCCTTG
ACAGATGTATGTCCTAACTTGTGATGAAGCATCAGTCCTGAAGCATCTGG
ACCAGAGGGGAGGACGAAGGAGCCTCTCGGAGGAGCCGGACTTTAAGACG
ATGACGTTAAATAATTTCCCGGAAGGCCTGTTCGACGTCATCGTGCTTGG
CGGAGGAGGCGGTACGGCAGACGCAGGCCCGGATTCGATCTATGAAGCTG
AAGAAATAGAAACGCTAAGTCTTACGCCTGCTGAGCGGCTGGATCTCGTC
CTTGACAGACGACTTATCAAGAGGACGGGGCTTGTGTTGTGCGATCCAAG
CGCCCTGGTAGGGGGTCAAGAAGCCGTGCGATCGCTCGTGGCGCGAGCGG
TAGAATCGAAGGGTACCGTGGAGCATGCCCGGGTGCCGGGCGCTGGTCCA
AACGGGGGTTTGCATGTGTTCAAATGGAAGACGTACTCCCACTGAACGAC
TTATCAAGAGGACGGGGCTTGTGTTGTGCGATCCAAGCGCCCTGGTAGGG
GGTCAAGAAGCCGTGCGATCGCTCGTGGCGCGAGCGGTAGAATCGAAGGG
TACCGTGGAGCATGCCCGGGTGCCGGGCGCTGGTCCAAACGGGGGTTTGC
ATGTGTTCAAATGGAAGACGTACTCCCACTGA
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