mRNA_H-elongata_contig89475.16447.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89475.16447.1
Unique NamemRNA_H-elongata_contig89475.16447.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 499 bits (1285), Expect = 8.320e-172
Identity = 249/282 (88.30%), Postives = 261/282 (92.55%), Query Frame = 1 
Query:    4 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            +GVVEYIDTEEEETTM+AMEPKDLEE+GGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ             LRMDTLAHVLHYPEKPL TTRAMEHLHFRELPSG NVIV IMVY+GYNQEDS++MNQSA+DRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAE+FERPARENTAGMKHGNYDKLE+DGLVAPGTRVSG DVLIGKTTPLGGG  SG+ GGPGHRSKKDSST MRSHE+G+VDRVMLTTNQEGFKFCKV
Sbjct:  128 QGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ-------------LRMDTLAHVLHYPEKPLVTTRAMEHLHFRELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTTPLGGG-VSGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 395
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BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 498 bits (1282), Expect = 3.580e-164
Identity = 248/282 (87.94%), Postives = 261/282 (92.55%), Query Frame = 1 
Query:    4 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            +GVVEYIDTEEEETTM+AMEPKDLEE+GGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ             LRMDTLAHVLHYPEKPL TTRAMEHLHFRELPSG NVIV IMVY+GYNQEDS++MNQSA+DRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAE+FERPARENTAGMKHGNYDKLE+DGLVAPGTRVSG DVLIGKTTPLGGG  +G+ GGPGHRSKKDSST MRSHE+G+VDRVMLTTNQEGFKFCKV
Sbjct:  748 QGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ-------------LRMDTLAHVLHYPEKPLVTTRAMEHLHFRELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTTPLGGG-VAGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 1015
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BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 424 bits (1090), Expect = 1.230e-136
Identity = 206/281 (73.31%), Postives = 239/281 (85.05%), Query Frame = 1 
Query:    7 GVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            GVVEY+DTEEEETTMIAM+P DL   GGYS+TYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+YASNYQ             +RMDTLAHVLHYP KPL  TR+MEHLHFRELPSGVNV+VAIM YTGYNQEDS++MNQSAIDRGLFRSS+FR++ D+EKAG G+G+MA+LSAE FERP ++  +G + G+YDKL+ DGLV+PGTRVSG+D++IGKTTPL  GGA G+  G    SK+DSST M++HE G +D+VMLTTNQEGFKFCKV
Sbjct:  662 GVVEYVDTEEEETTMIAMDPSDLAAGGGYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYASNYQ-------------VRMDTLAHVLHYPMKPLVCTRSMEHLHFRELPSGVNVVVAIMCYTGYNQEDSLIMNQSAIDRGLFRSSYFRSIVDKEKAGSGVGEMALLSAEQFERPNKDQCSGSRSGSYDKLDADGLVSPGTRVSGSDIIIGKTTPLAQGGAGGLTAGVNRFSKRDSSTAMKAHESGTIDQVMLTTNQEGFKFCKV 929
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BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: A0A7S4QFE0_9STRA (DNA-directed RNA polymerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QFE0_9STRA)

HSP 1 Score: 387 bits (995), Expect = 4.030e-125
Identity = 195/282 (69.15%), Postives = 230/282 (81.56%), Query Frame = 1 
Query:    4 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            +G+VEYIDTEEEETTMIAMEPKDLE    YSSTYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+SNYQ             +RMDT+AHVLHYP+KPL TTRAME LHFRELPSGVN +VAIMVYTGYNQEDS++MNQSAIDRGLFRSS++R   DQEKA   +G +  L++ETFE+P  ++  GMKHG Y KL+DDGLV PG RVSG+D+LIGKT PL G   +G+  GP   +K+D ST+M+++E G+VD VM++T +EG+KF KV
Sbjct:  627 EGLVEYIDTEEEETTMIAMEPKDLESGDSYSSTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYSSNYQ-------------VRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCVVAIMVYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYTDQEKAS-SVGSIGSLTSETFEKPHMDSCRGMKHGEYGKLDDDGLVQPGARVSGDDILIGKTAPLDG--TAGM--GPSRYTKRDCSTSMKANENGIVDNVMVSTTKEGYKFTKV 890
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BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: A0A6U0RQ91_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Biddulphiophycidae TaxID=33837 RepID=A0A6U0RQ91_9STRA)

HSP 1 Score: 379 bits (972), Expect = 1.700e-124
Identity = 187/282 (66.31%), Postives = 226/282 (80.14%), Query Frame = 1 
Query:    4 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            +G+VEY+DTEEEETTMIAMEP DL+    YSSTYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ             +RMDT+AHVLHYP+KPL TTRAME LHFRELPSGVN +VAIM+YTGYNQEDS+++NQSAIDRGLFRSS+FR  +DQEKA   +G +  L++ETFE+P+ +N  GMKHG+Y KL++DGL+  GTRVSG+D+LIGKT P+         G P   +K+D ST M+S E G+VD V+++T +EG++F KV
Sbjct:  133 EGIVEYVDTEEEETTMIAMEPSDLDADESYSSTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ-------------VRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCVVAIMIYTGYNQEDSLILNQSAIDRGLFRSSYFRCYSDQEKAS-SVGTIGSLTSETFEKPSFDNCRGMKHGDYGKLDEDGLIQSGTRVSGDDILIGKTAPM-----DSTAGMPSKFTKRDCSTAMKSTESGIVDNVLISTTKEGYRFTKV 395
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BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: A0A1Z5JUL8_FISSO (DNA-directed RNA polymerase subunit beta n=3 Tax=Naviculales TaxID=38748 RepID=A0A1Z5JUL8_FISSO)

HSP 1 Score: 389 bits (1000), Expect = 4.420e-124
Identity = 195/282 (69.15%), Postives = 229/282 (81.21%), Query Frame = 1 
Query:    4 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            +G+VEYIDTEEEETTMIAMEPKDL+    YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ             +RMDT+AHVLHYP+KPL TTRAME LHFRELPSGVN +VAIM+YTGYNQEDS++MNQSAIDRGLFRSS++R   DQEKA   +G +  L++E FE+PA +NT GMKHG Y KL+DDGLVAPGTRVSG+DVLIGKT P+         G P   +K+D ST+M+++E G+VD V+++T +EG++F KV
Sbjct:  592 EGLVEYIDTEEEETTMIAMEPKDLDATDAYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ-------------VRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYIDQEKAS-SVGTIGSLTSELFEKPAMDNTRGMKHGEYGKLDDDGLVAPGTRVSGDDVLIGKTAPM-----DSTSGMPSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKV 854
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BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: K0RD88_THAOC (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RD88_THAOC)

HSP 1 Score: 387 bits (994), Expect = 7.150e-122
Identity = 194/282 (68.79%), Postives = 231/282 (81.91%), Query Frame = 1 
Query:    4 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            +G+VEY+DTEEEETTMIAMEPKDL E  GYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN YQSAMGKQAMGIYASNYQ             +RMDT+AHVLHYP+KPL TTRAME L FRELPSGVNV+VAIM+YTGYNQEDS++MNQSAIDRGLFRSS++R  NDQEKA   +G +  L++ETFE+P  +NT GMK+G+Y+KL++DGLVAPGTRVSG+DVLIGKTTP        +   P   +K+D ST+M++ E G+VD V+++T +EG++F KV
Sbjct:  739 EGLVEYVDTEEEETTMIAMEPKDLGE--GYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGIYASNYQ-------------VRMDTMAHVLHYPQKPLCTTRAMEFLKFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQEKAA-SVGSVGALNSETFEKPTMDNTRGMKYGDYNKLDEDGLVAPGTRVSGDDVLIGKTTPT-----EALANAPSRYTKRDCSTSMKATESGIVDNVLISTTKEGYRFTKV 999
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BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: B8C598_THAPS (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C598_THAPS)

HSP 1 Score: 383 bits (983), Expect = 5.800e-121
Identity = 192/284 (67.61%), Postives = 231/284 (81.34%), Query Frame = 1 
Query:    4 KGVVEYIDTEEEETTMIAMEPKDLEEAGG--YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            +G+VEY+DTEEEETTMIAMEPKDL+   G  YS+TYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ             +RMDT+AHVLHYP+KPL TTRAME LHFRELPSGVNV+VAIM+YTGYNQEDS++MNQSAIDRGLFRSS++R  NDQEK+   +G +  L++E FERPA +N  GMK G+Y KL+DDGLV+PGTRVSG+DVLIGKT P+       I   P   +K+D ST+M+++E G+VD V+++T +EG++F KV
Sbjct:  668 EGLVEYVDTEEEETTMIAMEPKDLDMTVGEPYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ-------------VRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQEKSS-SVGSVGALNSEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGDDVLIGKTAPM-----DAIANTPSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKV 932
[Close]
BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: A0A7S1FRA3_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRA3_9STRA)

HSP 1 Score: 380 bits (976), Expect = 1.290e-119
Identity = 194/284 (68.31%), Postives = 227/284 (79.93%), Query Frame = 1 
Query:    7 GVVEYIDTEEEETTMIAMEPKDLEEA---GGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            G+VEYIDTEEEETTMIAMEPKDLEE+   GGYSSTYTHCEIHP+MILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ             +RMDT+AHVLHYP+KPL TTRAME LHFRELPSGVN IV IM+YTGYNQEDS+++NQSAIDRGLFRSS+FR  +DQEK   G G    L++ETFERP  +N  GMKHG Y KL++DGLV PG+RVSG D+LIGKT PL     + ++  P   +K+D ST M+S + G+VD VM++T +EG++F KV
Sbjct:  719 GIVEYIDTEEEETTMIAMEPKDLEESRRGGGYSSTYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ-------------VRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCIVGIMIYTGYNQEDSLILNQSAIDRGLFRSSYFRCYSDQEK---GSGASNPLNSETFERPLHDNCRGMKHGEYGKLDEDGLVQPGSRVSGEDILIGKTAPLE---TNSVM--PSRYTKRDCSTPMKSTDNGIVDNVMISTTKEGYRFTKV 981
[Close]
BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Match: A0A1E7ERG7_9STRA (DNA-directed RNA polymerase subunit beta n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7ERG7_9STRA)

HSP 1 Score: 376 bits (966), Expect = 1.660e-118
Identity = 187/282 (66.31%), Postives = 224/282 (79.43%), Query Frame = 1 
Query:    4 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMDTLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSILMNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRSKKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKV 849
            +G+VEYIDTEEEETTM+AM+P DL     YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ             +RMDT+AHVLHYP+KPL TTRAME LHFRELPSGVN IV I+VYTGYNQEDS++MNQSAIDRGLFRSS++R   DQEKA   +G +  L++E FE+P ++ T GMKHG Y KL++DGLVAPGTRVSG+D+LIGKT P+           P   +K+D ST+M+++E G+VD V+++T +EG++F KV
Sbjct:  668 EGIVEYIDTEEEETTMVAMDPVDLNADESYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ-------------VRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCIVGILVYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYIDQEKAS-SVGTLGTLNSEIFEKPTQDKTRGMKHGEYGKLDEDGLVAPGTRVSGDDILIGKTAPM-----DSSTNMPSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKV 930
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89475.16447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNN2_9PHAE8.320e-17288.30DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
D7FHZ3_ECTSI3.580e-16487.94DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA1.230e-13673.31DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4QFE0_9STRA4.030e-12569.15DNA-directed RNA polymerase n=1 Tax=Ditylum bright... [more]
A0A6U0RQ91_9STRA1.700e-12466.31DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
A0A1Z5JUL8_FISSO4.420e-12469.15DNA-directed RNA polymerase subunit beta n=3 Tax=N... [more]
K0RD88_THAOC7.150e-12268.79DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
B8C598_THAPS5.800e-12167.61DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
A0A7S1FRA3_9STRA1.290e-11968.31DNA-directed RNA polymerase subunit beta n=2 Tax=C... [more]
A0A1E7ERG7_9STRA1.660e-11866.31DNA-directed RNA polymerase subunit beta n=6 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89475contigH-elongata_contig89475:237..2317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score501.1
Seed ortholog evalue3.4e-139
Seed eggNOG ortholog2880.D7FHZ3
Preferred nameRPB2
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size879
Cds size879
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89475.16447.1prot_H-elongata_contig89475.16447.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89475 237..2317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.9416265-CDS-H-elongata_contig89475:236..5931622931294.9416265-CDS-H-elongata_contig89475:236..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89475 237..593 -
1691679777.5425758-CDS-H-elongata_contig89475:236..5931691679777.5425758-CDS-H-elongata_contig89475:236..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89475 237..593 -
1622931294.9672716-CDS-H-elongata_contig89475:1367..16011622931294.9672716-CDS-H-elongata_contig89475:1367..1601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89475 1368..1601 -
1691679777.5577075-CDS-H-elongata_contig89475:1367..16011691679777.5577075-CDS-H-elongata_contig89475:1367..1601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89475 1368..1601 -
1622931294.9820912-CDS-H-elongata_contig89475:2029..23171622931294.9820912-CDS-H-elongata_contig89475:2029..2317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89475 2030..2317 -
1691679777.5685332-CDS-H-elongata_contig89475:2029..23171691679777.5685332-CDS-H-elongata_contig89475:2029..2317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89475 2030..2317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89475.16447.1

>prot_H-elongata_contig89475.16447.1 ID=prot_H-elongata_contig89475.16447.1|Name=mRNA_H-elongata_contig89475.16447.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
AKGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCA
SIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQASALFFFFSFFHALRMD
TLAHVLHYPEKPLTTTRAMEHLHFRELPSGVNVIVAIMVYTGYNQEDSIL
MNQSAIDRGLFRSSFFRTLNDQEKAGRGMGDMAVLSAETFERPARENTAG
MKHGNYDKLEDDGLVAPGTRVSGNDVLIGKTTPLGGGGASGIVGGPGHRS
KKDSSTTMRSHEEGMVDRVMLTTNQEGFKFCKVGRSMGWYLG*
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mRNA from alignment at H-elongata_contig89475:237..2317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89475.16447.1 ID=mRNA_H-elongata_contig89475.16447.1|Name=mRNA_H-elongata_contig89475.16447.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2081bp|location=Sequence derived from alignment at H-elongata_contig89475:237..2317- (Himanthalia elongata Himel1 dioecious)
GCGAAGGGCGTGGTGGAGTACATCGACACAGAGGAGGAAGAGACCACCAT
GATCGCCATGGAGCCCAAGGATCTTGAGGAGGCGGGAGGCTACTCCAGCA
CCTATACGCACTGCGAGATCCATCCCAGCATGATCCTTGGAGTGTGCGCG
TCCATTATTCCGTTTCCCGATCACAACCAGTCGCCGCGTAACACCTACCA
GTCGGCCATGGGGAAGCAGGCCATGGGGATCTACGCCAGCAACTACCAGG
CAAGCGCCCTCTTTTTCTTCTTTTCTTTTTTTCACGCCGTAGAATTAGAT
TTTGATTTTCTCCTCTCCTTTCGTTTCTGTTTCGGTTACTTTTTTCCTCT
TTTTTTTTCTTCTTGTATTTTTATAAATATTCGGTTTTCGAATTGTGTTG
GGTTTTGGTTTTGCGTTTCATTCTTACCTTGGTCGGTCTCCCCTACCCTA
CCCTACCCTCCCCTACCCTTCCCTTCCCCCGCTGTCTTGAAGCCTCCGAT
GCAAAGCTTTTGCGGCTGGCATACACCAGACCACCGCAGCCCTTTCCGTT
CGTTAAGACGTTGAGCTGGAACAACTCGTGCCATATTACCATTACACCTA
GAGCGCGTGCGTCCCCTCCCCCCAACCCCCCGCTATGCCTTGTCTTACCC
GGTCTCCGATCGAGCCCTGCCCCTCTCCTCCCCTACCTCGGAAAACGCCT
CTTCGATGCTGTACAGCTCCGGATGGATACCCTCGCCCACGTGCTGCACT
ACCCGGAGAAGCCCTTAACCACCACGCGTGCGATGGAGCACCTGCACTTC
CGGGAGCTGCCGTCGGGGGTCAACGTGATCGTGGCCATCATGGTGTACAC
GGGCTACAACCAGGAGGACTCGATCTTGATGAACCAGAGCGCGATCGATC
GTGGGCTGTTCCGGTCGTCGTTTTTTCGAACCCTCAACGATCAAGAAAAG
GTAAGAGGGATTTGGTTACCTTAGGGTCTGTAGAACAAAATGAAGGGAAG
AGGCGGGTAGTGGCGGGCATTTGTCCCTATCTTTTCATATTCTCCTCCGA
ACTCTCTTGCTTCGTAGTATCCTCGTGTTGTTTTTTTTCTTAATTTTTCA
TATTCGGGTGTTATTTCTTTTCTCGTCATATTCCGGAGGCTCTTCCCTTG
TCTTAACCTCGTGTTCTTTCTTATCTTGCCACATTCTCGTATCCTATTTT
CCCTGTTCTTTGCTTTCTTGTCATCTTCTATAATAGTGTAATATATTTTC
TTGTCATTCTTGCCATTCTTGTCATACCCTTTCTGTTATCTCTTTTCTCA
TCATCCCCCTTAAATCTCCCCTCTTGTTGTAGTCATCTCCTGTGCTGTAT
GGGGAACCGAGGCACGGCACTAATCACATCTGGTCTGAGGAAGAGGTATC
ACCTGCTGATTCACACCACCCCCACTCCCCCCCCTAGTCGCCGCCTGTTG
GTTACGTTCTACTGTCAGTCGAAGACGAATAAGAGTGGGTTGGGGAGGGG
GTAGTTGTAGCAGGCAGAGAAGTTATGACAAAAGCCACAGCCACAAACAT
AGCCACATTTAAGATGGATATCTCCCTTTTTTGCAATATCAACAGATGGA
CAGAACGATCTTACTTAACTTGACTTGACTTTTGACTATGACTTTGATTG
CGCCCCCTCTCTATTACTCTCTTTCTCTATCTGTCCCCTTCCCCCTCCCC
TTTCTCCGCCTTCTCTCGACCAAGGCGGGGCGAGGCATGGGCGACATGGC
GGTCCTAAGTGCGGAGACCTTTGAGCGGCCGGCGAGGGAGAACACCGCCG
GCATGAAGCATGGTAATTACGACAAGCTTGAGGACGATGGCCTCGTCGCG
CCGGGCACGCGCGTCTCCGGCAACGACGTGCTTATCGGGAAGACGACACC
CCTGGGAGGCGGGGGCGCCTCGGGGATCGTGGGAGGGCCTGGGCATCGCA
GCAAGAAAGACTCGAGCACCACCATGAGGTCTCATGAGGAGGGCATGGTG
GACCGAGTGATGCTCACTACCAACCAAGAGGGGTTCAAGTTCTGCAAGGT
GGGTCGGTCGATGGGCTGGTATCTGGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig89475:237..2317-

>mRNA_H-elongata_contig89475.16447.1 ID=mRNA_H-elongata_contig89475.16447.1|Name=mRNA_H-elongata_contig89475.16447.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig89475:237..2317- (Himanthalia elongata Himel1 dioecious)
GCGAAGGGCGTGGTGGAGTACATCGACACAGAGGAGGAAGAGACCACCAT
GATCGCCATGGAGCCCAAGGATCTTGAGGAGGCGGGAGGCTACTCCAGCA
CCTATACGCACTGCGAGATCCATCCCAGCATGATCCTTGGAGTGTGCGCG
TCCATTATTCCGTTTCCCGATCACAACCAGTCGCCGCGTAACACCTACCA
GTCGGCCATGGGGAAGCAGGCCATGGGGATCTACGCCAGCAACTACCAGG
CAAGCGCCCTCTTTTTCTTCTTTTCTTTTTTTCACGCCGCGAAGGGCGTG
GTGGAGTACATCGACACAGAGGAGGAAGAGACCACCATGATCGCCATGGA
GCCCAAGGATCTTGAGGAGGCGGGAGGCTACTCCAGCACCTATACGCACT
GCGAGATCCATCCCAGCATGATCCTTGGAGTGTGCGCGTCCATTATTCCG
TTTCCCGATCACAACCAGTCGCCGCGTAACACCTACCAGTCGGCCATGGG
GAAGCAGGCCATGGGGATCTACGCCAGCAACTACCAGGCAAGCGCCCTCT
TTTTCTTCTTTTCTTTTTTTCACGCCCTCCGGATGGATACCCTCGCCCAC
GTGCTGCACTACCCGGAGAAGCCCTTAACCACCACGCGTGCGATGGAGCA
CCTGCACTTCCGGGAGCTGCCGTCGGGGGTCAACGTGATCGTGGCCATCA
TGGTGTACACGGGCTACAACCAGGAGGACTCGATCTTGATGAACCAGAGC
GCGATCGATCGTGGGCTGTTCCGGTCGTCGTTTTTTCGAACCCTCAACGA
TCAAGAAAAGCTCCGGATGGATACCCTCGCCCACGTGCTGCACTACCCGG
AGAAGCCCTTAACCACCACGCGTGCGATGGAGCACCTGCACTTCCGGGAG
CTGCCGTCGGGGGTCAACGTGATCGTGGCCATCATGGTGTACACGGGCTA
CAACCAGGAGGACTCGATCTTGATGAACCAGAGCGCGATCGATCGTGGGC
TGTTCCGGTCGTCGTTTTTTCGAACCCTCAACGATCAAGAAAAGGCGGGG
CGAGGCATGGGCGACATGGCGGTCCTAAGTGCGGAGACCTTTGAGCGGCC
GGCGAGGGAGAACACCGCCGGCATGAAGCATGGTAATTACGACAAGCTTG
AGGACGATGGCCTCGTCGCGCCGGGCACGCGCGTCTCCGGCAACGACGTG
CTTATCGGGAAGACGACACCCCTGGGAGGCGGGGGCGCCTCGGGGATCGT
GGGAGGGCCTGGGCATCGCAGCAAGAAAGACTCGAGCACCACCATGAGGT
CTCATGAGGAGGGCATGGTGGACCGAGTGATGCTCACTACCAACCAAGAG
GGGTTCAAGTTCTGCAAGGTGGGTCGGTCGATGGGCTGGTATCTGGGATA
AGCGGGGCGAGGCATGGGCGACATGGCGGTCCTAAGTGCGGAGACCTTTG
AGCGGCCGGCGAGGGAGAACACCGCCGGCATGAAGCATGGTAATTACGAC
AAGCTTGAGGACGATGGCCTCGTCGCGCCGGGCACGCGCGTCTCCGGCAA
CGACGTGCTTATCGGGAAGACGACACCCCTGGGAGGCGGGGGCGCCTCGG
GGATCGTGGGAGGGCCTGGGCATCGCAGCAAGAAAGACTCGAGCACCACC
ATGAGGTCTCATGAGGAGGGCATGGTGGACCGAGTGATGCTCACTACCAA
CCAAGAGGGGTTCAAGTTCTGCAAGGTGGGTCGGTCGATGGGCTGGTATC
TGGGATAA
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